Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://www.centreleonberard.fr
+ - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
- ===========================================================================**/
+ ======================================================================-====*/
#ifndef CLITKEXTRACTLYMPHSTATIONSSGENERICFILTER_TXX
#define CLITKEXTRACTLYMPHSTATIONSSGENERICFILTER_TXX
f->SetWriteStepFlag(mArgsInfo.writeStep_flag);
f->SetVerboseMemoryFlag(mArgsInfo.verboseMemory_flag);
f->SetAFDBFilename(mArgsInfo.afdb_arg);
- f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.maxAntSpine_arg);
- f->SetFuzzyThresholdForS8(mArgsInfo.fuzzyThresholdForS8_arg);
- f->SetInjectedThresholdForS8(mArgsInfo.injectedThresholdForS8_arg);
+
+ // Station 8
+ //f->SetDistanceMaxToAnteriorPartOfTheSpine(mArgsInfo.S8_maxAntSpine_arg);
+ f->SetFuzzyThreshold("8", "Esophagus", mArgsInfo.S8_ft_Esophagus_arg);
+ // f->SetInjectedThresholdForS8(mArgsInfo.tS8_injectedThreshold_arg);
// Check multiple options for radius dilatation
/*
*/
typename FilterType::MaskImagePointType p;
p[0] = 7; p[1] = 5; p[2] = 0; // default value
- if (mArgsInfo.esophagusDilatationForAnt_given == 3) {
+ if (mArgsInfo.S8_esophagusDilatationForAnt_given == 3) {
for(uint i=0; i<3; i++)
- p[i] = mArgsInfo.esophagusDilatationForAnt_arg[i];
+ p[i] = mArgsInfo.S8_esophagusDilatationForAnt_arg[i];
}
else {
- if (mArgsInfo.esophagusDilatationForAnt_given == 1) {
+ if (mArgsInfo.S8_esophagusDilatationForAnt_given == 1) {
for(uint i=0; i<3; i++)
- p[i] = mArgsInfo.esophagusDilatationForAnt_arg[0];
+ p[i] = mArgsInfo.S8_esophagusDilatationForAnt_arg[0];
}
}
f->SetEsophagusDiltationForAnt(p);
p[0] = 5; p[1] = 10; p[2] = 1; // default value
- if (mArgsInfo.esophagusDilatationForRight_given == 3) {
+ if (mArgsInfo.S8_esophagusDilatationForRight_given == 3) {
for(uint i=0; i<3; i++)
- p[i] = mArgsInfo.esophagusDilatationForRight_arg[i];
+ p[i] = mArgsInfo.S8_esophagusDilatationForRight_arg[i];
}
else {
- if (mArgsInfo.esophagusDilatationForRight_given == 1) {
+ if (mArgsInfo.S8_esophagusDilatationForRight_given == 1) {
for(uint i=0; i<3; i++)
- p[i] = mArgsInfo.esophagusDilatationForRight_arg[0];
+ p[i] = mArgsInfo.S8_esophagusDilatationForRight_arg[0];
}
}
f->SetEsophagusDiltationForRight(p);
f->AddComputeStation(mArgsInfo.station_arg[i]);
// Station 7
- f->SetFuzzyThresholdForS7("Bronchi", mArgsInfo.tS7_Bronchi_arg);
- f->SetFuzzyThresholdForS7("LeftSuperiorPulmonaryVein", mArgsInfo.tS7_LeftSuperiorPulmonaryVein_arg);
- f->SetFuzzyThresholdForS7("RightSuperiorPulmonaryVein", mArgsInfo.tS7_RightSuperiorPulmonaryVein_arg);
- f->SetFuzzyThresholdForS7("RightPulmonaryArtery", mArgsInfo.tS7_RightPulmonaryArtery_arg);
- f->SetFuzzyThresholdForS7("LeftPulmonaryArtery", mArgsInfo.tS7_LeftPulmonaryArtery_arg);
- f->SetFuzzyThresholdForS7("SVC", mArgsInfo.tS7_SVC_arg);
+ f->SetFuzzyThreshold("7", "Bronchi", mArgsInfo.S7_ft_Bronchi_arg);
+ f->SetFuzzyThreshold("7", "LeftSuperiorPulmonaryVein", mArgsInfo.S7_ft_LeftSuperiorPulmonaryVein_arg);
+ f->SetFuzzyThreshold("7", "RightSuperiorPulmonaryVein", mArgsInfo.S7_ft_RightSuperiorPulmonaryVein_arg);
+ f->SetFuzzyThreshold("7", "RightPulmonaryArtery", mArgsInfo.S7_ft_RightPulmonaryArtery_arg);
+ f->SetFuzzyThreshold("7", "LeftPulmonaryArtery", mArgsInfo.S7_ft_LeftPulmonaryArtery_arg);
+ f->SetFuzzyThreshold("7", "SVC", mArgsInfo.S7_ft_SVC_arg);
+ f->SetS7_UseMostInferiorPartOnlyFlag(mArgsInfo.S7_UseMostInferiorPartOnly_flag);
+
+ // Station 3A
+ f->SetFuzzyThreshold("3A", "Sternum", mArgsInfo.S3A_ft_Sternum_arg);
+ f->SetFuzzyThreshold("3A", "SubclavianArtery", mArgsInfo.S3A_ft_SubclavianArtery_arg);
+
+ // Station 2RL
+ f->SetFuzzyThreshold("2RL", "CommonCarotidArtery", mArgsInfo.S2RL_ft_CommonCarotidArtery_arg);
+ f->SetFuzzyThreshold("2RL", "BrachioCephalicTrunk", mArgsInfo.S2RL_ft_BrachioCephalicTrunk_arg);
+ f->SetFuzzyThreshold("2RL", "BrachioCephalicVein", mArgsInfo.S2RL_ft_BrachioCephalicVein_arg);
+ f->SetFuzzyThreshold("2RL", "Aorta", mArgsInfo.S2RL_ft_Aorta_arg);
+ f->SetFuzzyThreshold("2RL", "SubclavianArteryLeft", mArgsInfo.S2RL_ft_SubclavianArteryLeft_arg);
+ f->SetFuzzyThreshold("2RL", "SubclavianArteryRight", mArgsInfo.S2RL_ft_SubclavianArteryRight_arg);
}
//--------------------------------------------------------------------