#define COLUMN_RELOAD_IMAGE 6
#define COLUMN_IMAGE_NAME 7
-#if CLITK_PRIVATE_FEATURES
- #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.usf)"
+#ifdef CLITK_PRIVATE_FEATURES
+#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz *.usf)"
#else
- #define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr)"
+#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz)"
#endif
+
/*Data Tree values
0,Qt::UserRole full filename
1,Qt::CheckStateRole checkbutton UL View
connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double, bool)),
this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
+ connect(landmarksPanel,SIGNAL(SelectedPointChanged()),this,SLOT(GoToLandmark()));
playMode = 0;//pause
mFrameRate = 10;
mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
std::vector<std::string> vector;
- unsigned int currentDim = 0;
- std::vector<double> currentSpacing;
- std::vector<int> currentSize;
- std::vector<double> currentOrigin;
-
- for (int i = 0; i < files.size(); i++) {
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- if (reader) {
- reader->SetFileName(files[i].toStdString().c_str());
- reader->ReadImageInformation();
- if (i == 0)
- currentDim = reader->GetNumberOfDimensions();
- bool IsOk = true;
- for (unsigned int j = 0; j < currentDim; j++) {
- if (i == 0) {
- if (j == 0) {
- currentSpacing.resize(currentDim);
- currentSize.resize(currentDim);
- currentOrigin.resize(currentDim);
- }
- currentOrigin[j] = reader->GetOrigin(j);
- currentSpacing[j] = reader->GetSpacing(j);
- currentSize[j] = reader->GetDimensions(j);
- } else if (currentDim != reader->GetNumberOfDimensions()
- || currentSpacing[j] != reader->GetSpacing(j)
- || currentSize[j] != (int)reader->GetDimensions(j)
- || currentOrigin[j] != reader->GetOrigin(j)) {
- QString error = "Cannot read file (too different from others ";
- error += files[i].toStdString().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- IsOk = false;
- break;
- }
- }
- if (IsOk)
- vector.push_back(files[i].toStdString());
- } else {
- QString error = "Cannot read file info for ";
- error += files[i].toStdString().c_str();
- error += "\n";
- error += "Maybe you're trying to open an image in an unsupported format?\n";
- QMessageBox::information(this,tr("Reading problem"),error);
- }
- }
+ for (int i = 0; i < files.size(); i++)
+ vector.push_back(files[i].toStdString());
sort(vector.begin(),vector.end());
if (vector.size() > 1)
LoadImages(vector, vvImageReader::MERGEDWITHTIME);
}
DataTree->topLevelItem(selected)->setSelected(1);
mCurrentSelectedImageId = id;
+
+ landmarksPanel->SetCurrentLandmarks(mSlicerManagers[selected]->GetLandmarks(),
+ mSlicerManagers[selected]->GetTSlice());
+ landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+ landmarksPanel->SetCurrentImage(mSlicerManagers[selected]->GetFileName().c_str());
+
emit SelectedImageHasChanged(mSlicerManagers[selected]);
}
//------------------------------------------------------------------------------
//read image header
int NPixel = 1;
+ int tSlice = 0;
vvImage::Pointer imageSelected;
if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
}
else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
}
else {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
}
dimension = imageSelected->GetNumberOfDimensions();
infoPanel->setOrigin(GetVectorDoubleAsString(origin));
infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
- transformation = imageSelected->GetTransform()[mSlicerManagers[index]->GetTSlice()]->GetMatrix();
+ transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
+ mSlicerManagers[index]->GetTSlice());
landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
}
}
- infoPanel->setFileName(image);
- infoPanel->setDimension(dim);
- infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
- infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
- infoPanel->setOrigin(GetVectorDoubleAsString(origin));
- infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
- infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
-
- landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
- landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
- landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
-
- overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
- for (int i = 0; i < 4; i++) {
- if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
- mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
- break;
- }
- }
+// infoPanel->setFileName(image);
+// infoPanel->setDimension(dim);
+// infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
+// infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
+// infoPanel->setOrigin(GetVectorDoubleAsString(origin));
+// infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
+// infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
+//
+// landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
+// mSlicerManagers[index]->GetTSlice());
+// landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+// landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
+//
+// overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
+// for (int i = 0; i < 4; i++) {
+// if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
+// mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
+// break;
+// }
+// }
WindowLevelChanged();
slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
QMessageBox::information(this,tr("Problem reading Fusion !"),"File doesn't exist!");
}
//------------------------------------------------------------------------------
-
+//------------------------------------------------------------------------------
+void vvMainWindow::AddLandmarks(int index, std::vector<std::string> files)
+{
+ if (!landmarksPanel->LoadFromFile(files))
+ QMessageBox::information(this,tr("Problem reading Landmarks !"),"File doesn't exist!");
+
+ landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+ landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
+}
//------------------------------------------------------------------------------
void vvMainWindow::OpenField()
QString Extensions = "Images ( *.mhd)";
Extensions += ";;Images ( *.mha)";
- Extensions += ";;Images ( *.vf)";
+ Extensions += ";;VF Images ( *.vf)";
+ Extensions += ";;nii Images ( *.nii)";
+ Extensions += ";;nrrd Images ( *.nrrd)";
+ Extensions += ";;nhdr Images ( *.nhdr)";
+ Extensions += ";;All Files (*)";
QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
if (!file.isEmpty())
AddField(file,index);
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::GoToLandmark()
+{
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ for (int column = 1; column < 5; column++) {
+ if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
+ double* cursorPos = landmarksPanel->GetSelectedPoint();
+ mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
+ cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
+ mSlicerManagers[index]->UpdateViews(1,column-1);
+ mSlicerManagers[index]->UpdateLinked(column-1);
+ break;
+ }
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::PlayPause()
{
//------------------------------------------------------------------------------
void vvMainWindow::UpdateRenderWindows()
{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ mSlicerManagers[i]->GetSlicer(0)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(1)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(2)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(3)->UpdateLandmarks();
+ }
if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();