/*=========================================================================
- Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+Program: vv http://www.creatis.insa-lyon.fr/rio/vv
- Authors belong to:
- - University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://www.centreleonberard.fr
- - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+Authors belong to:
+- University of LYON http://www.universite-lyon.fr/
+- Léon Bérard cancer center http://www.centreleonberard.fr
+- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
- This software is distributed WITHOUT ANY WARRANTY; without even
- the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- PURPOSE. See the copyright notices for more information.
+This software is distributed WITHOUT ANY WARRANTY; without even
+the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+PURPOSE. See the copyright notices for more information.
- It is distributed under dual licence
+It is distributed under dual licence
- - BSD See included LICENSE.txt file
- - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+- BSD See included LICENSE.txt file
+- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
===========================================================================**/
#include <algorithm>
#include "vvMesh.h"
#include "vvStructSelector.h"
#include "vvMeshReader.h"
+#include "vvSaveState.h"
+#include "vvReadState.h"
+#ifdef CLITK_USE_PACS_CONNECTION
+#include "vvQPacsConnection.h"
+#endif
#include "clitkConfiguration.h"
+#include "clitkMatrix.h"
// ITK include
#include <itkImage.h>
#include <vtkPNMWriter.h>
#include <vtkPNGWriter.h>
#include <vtkJPEGWriter.h>
+#include <vtkGenericMovieWriter.h>
+#ifdef CLITK_EXPERIMENTAL
+# include <vvAnimatedGIFWriter.h>
+#endif
+#ifdef VTK_USE_VIDEO_FOR_WINDOWS
+# include <vtkAVIWriter.h>
+#endif
#ifdef VTK_USE_FFMPEG_ENCODER
# include <vtkFFMPEGWriter.h>
#endif
// Standard includes
#include <iostream>
+#include <fstream>
#include <sstream>
#include <iomanip>
#define COLUMN_RELOAD_IMAGE 6
#define COLUMN_IMAGE_NAME 7
-#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN )"
+#ifdef CLITK_PRIVATE_FEATURES
+#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz *.usf *.svl)"
+#else
+#define EXTENSIONS "Images ( *.bmp *.png *.jpeg *.jpg *.tif *.mhd *.mha *.hdr *.vox *.his *.xdr *.SCAN *.nii *.nrrd *.nhdr *.refscan *.nii.gz)"
+#endif
+
/*Data Tree values
- 0,Qt::UserRole full filename
- 1,Qt::CheckStateRole checkbutton UL View
- 1,Qt::UserRole overlay, fusion or vector
- 2,Qt::CheckStateRole checkbutton UR View
- 3,Qt::CheckStateRole checkbutton DL View
- 4,Qt::CheckStateRole checkbutton DR View
- 5,0 short filename
- 5,Qt::UserRole mSlicerManager id*/
+0,Qt::UserRole full filename
+1,Qt::CheckStateRole checkbutton UL View
+1,Qt::UserRole overlay, fusion or vector
+2,Qt::CheckStateRole checkbutton UR View
+3,Qt::CheckStateRole checkbutton DL View
+4,Qt::CheckStateRole checkbutton DR View
+5,0 short filename
+5,Qt::UserRole mSlicerManager id*/
//------------------------------------------------------------------------------
vvMainWindow::vvMainWindow():vvMainWindowBase()
{
setupUi(this); // this sets up the GUI
-
+ setDicomClient();
mInputPathName = "";
mMenuTools = menuTools;
// mMenuSegmentation = menuSegmentation;
this->setContextMenuPolicy(Qt::CustomContextMenu);
contextActions.resize(0);
QAction* actionOpen_new_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/fileopen.png")),
- tr("O&pen new Image"));
+ tr("O&pen new Image"));
actionOpen_new_image->setShortcut(QKeySequence(tr("Ctrl+O")));
connect(actionOpen_new_image,SIGNAL(triggered()),this,SLOT(OpenImages()));
contextActions.push_back(actionOpen_new_image);
contextMenu.addSeparator();
QAction* actionClose_Image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/exit.png")),
- tr("Close Current Image"));
+ tr("Close Current Image"));
connect(actionClose_Image,SIGNAL(triggered()),this,SLOT(CloseImage()));
contextActions.push_back(actionClose_Image);
QAction* actionReload_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")),
- tr("Reload Current Image"));
+ tr("Reload Current Image"));
connect(actionReload_image,SIGNAL(triggered()),this,SLOT(ReloadImage()));
contextActions.push_back(actionReload_image);
QAction* actionSave_image = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
- tr("Save Current Image"));
+ tr("Save Current Image"));
connect(actionSave_image,SIGNAL(triggered()),this,SLOT(SaveAs()));
contextActions.push_back(actionSave_image);
+ QAction* actionSave_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
+ tr("Save Current State"));
+ connect(actionSave_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
+ contextActions.push_back(actionSave_state);
+
+ QAction* actionRead_state = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/filesave.png")),
+ tr("Read Saved State"));
+ connect(actionRead_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
+ contextActions.push_back(actionRead_state);
+
contextMenu.addSeparator();
contextMenu.addAction(actionAdd_VF_to_current_Image);
contextActions.push_back(actionAdd_VF_to_current_Image);
- QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("Add overlay image to current image"));
- contextMenu.addAction(actionAdd_Overlay_to_current_Image);
- contextActions.push_back(actionAdd_Overlay_to_current_Image);
-
- connect(actionAdd_Overlay_to_current_Image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
+ //QAction* actionAdd_Overlay_to_current_Image = menuOverlay->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
+ // tr("Add overlay image to current image"));
+ contextMenu.addAction(actionAdd_overlay_image_to_current_image);
+ contextActions.push_back(actionAdd_overlay_image_to_current_image);
contextMenu.addAction(actionAdd_fusion_image);
- connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
contextActions.push_back(actionAdd_fusion_image);
+#ifdef CLITK_EXPERIMENTAL
+ contextMenu.addAction(actionAdd_USSequence_toCT);
+ contextActions.push_back(actionAdd_USSequence_toCT);
+#endif
+
+
contextMenu.addSeparator();
QAction* actionResetMatrix = contextMenu.addAction(QIcon(QString::fromUtf8(":/common/icons/identity.png")),
- tr("Reset transformation to identity"));
+ tr("Reset transformation to identity"));
connect(actionResetMatrix, SIGNAL(triggered()), this,SLOT(ResetTransformationToIdentity()));
// TRIAL DS
// m->setObjectName(QString::fromUtf8("TOTOTO"));
contextMenu.addMenu(m);
QAction * a = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("BIDON"));
+ tr("BIDON"));
QAction * b = m->addAction(QIcon(QString::fromUtf8(":/common/icons/GPSup.png")),
- tr("BIDON2"));
+ tr("BIDON2"));
m->addAction(a);
m->addAction(b);
connect(a,SIGNAL(triggered()),this,SLOT(AddFusionImage()));
documentation = new vvDocumentation();
help_dialog = new vvHelpDialog();
dicomSeriesSelector = new vvDicomSeriesSelector();
+#ifdef CLITK_USE_PACS_CONNECTION
+ PacsConnection = new vvQPacsConnection();
+#endif
inverseButton->setEnabled(0);
- actionAdd_Overlay_to_current_Image->setEnabled(0);
+ actionAdd_overlay_image_to_current_image->setEnabled(0);
actionSave_As->setEnabled(0);
actionAdd_VF_to_current_Image->setEnabled(0);
actionAdd_fusion_image->setEnabled(0);
+ actionAdd_USSequence_toCT->setEnabled(0);
//init the sliders
verticalSliders.push_back(NOVerticalSlider);
connect(actionWarp_image_with_vector_field,SIGNAL(triggered()),this,SLOT(WarpImage()));
connect(actionLoad_images,SIGNAL(triggered()),this,SLOT(OpenImages()));
connect(actionOpen_Dicom,SIGNAL(triggered()),this,SLOT(OpenDicom()));
- connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
+ #ifdef CLITK_USE_PACS_CONNECTION
+connect(actionConnect_Pacs,SIGNAL(triggered()),this,SLOT(ConnectPacs()));
+#endif
+ // connect(actionOpen_Dicom_Struct,SIGNAL(triggered()),this,SLOT(OpenDCStructContour()));
connect(actionOpen_VTK_contour,SIGNAL(triggered()),this,SLOT(OpenVTKContour()));
connect(actionOpen_Multiple_Images_As_One,SIGNAL(triggered()),this,SLOT(MergeImages()));
connect(actionSlice_Image_As_Multiple_Images,SIGNAL(triggered()),this,SLOT(SliceImages()));
connect(actionOpen_Image_With_Time,SIGNAL(triggered()),this,SLOT(OpenImageWithTime()));
connect(actionMerge_images_as_n_dim_t, SIGNAL(triggered()), this, SLOT(MergeImagesWithTime()));
connect(actionSave_As,SIGNAL(triggered()),this,SLOT(SaveAs()));
+ connect(actionSave_current_state,SIGNAL(triggered()),this,SLOT(SaveCurrentState()));
+ connect(actionRead_saved_state,SIGNAL(triggered()),this,SLOT(ReadSavedState()));
connect(actionExit,SIGNAL(triggered()),this,SLOT(close()));
connect(actionAdd_VF_to_current_Image,SIGNAL(triggered()),this,SLOT(OpenField()));
+ connect(actionAdd_fusion_image,SIGNAL(triggered()),this,SLOT(SelectFusionImage()));
+ connect(actionAdd_overlay_image_to_current_image,SIGNAL(triggered()), this,SLOT(SelectOverlayImage()));
+ connect(actionAdd_USSequence_toCT,SIGNAL(triggered()), this,SLOT(SelectFusionSequence()));
connect(actionNavigation_Help,SIGNAL(triggered()),this,SLOT(ShowHelpDialog()));
connect(actionDocumentation,SIGNAL(triggered()),this,SLOT(ShowDocumentation()));
connect(actionRegister_vv,SIGNAL(triggered()),this,SLOT(PopupRegisterForm()));
+ connect(overlayPanel, SIGNAL(FusionSequenceCorrespondancesButtonPressed()), this, SLOT(SelectFusionSequenceCorrespondances()));
+
+
///////////////////////////////////////////////
connect(actionSegmentation,SIGNAL(triggered()),this,SLOT(SegmentationOnCurrentImage()));
connect(actionSurface_Viewer,SIGNAL(triggered()),this,SLOT(SurfaceViewerLaunch()));
connect(actionNorth_West_Window,SIGNAL(triggered()),this,SLOT(SaveNOScreenshot()));
connect(actionSouth_East_Window,SIGNAL(triggered()),this,SLOT(SaveSEScreenshot()));
connect(actionSouth_West_Window,SIGNAL(triggered()),this,SLOT(SaveSOScreenshot()));
+ connect(actionSave_all_slices,SIGNAL(triggered()),this,SLOT(SaveScreenshotAllSlices()));
connect(DataTree,SIGNAL(itemSelectionChanged()),this,SLOT(ImageInfoChanged()));
connect(DataTree,SIGNAL(itemClicked(QTreeWidgetItem*, int)),this,
- SLOT(DisplayChanged(QTreeWidgetItem*, int)));
+ SLOT(DisplayChanged(QTreeWidgetItem*, int)));
connect(viewButton,SIGNAL(clicked()),this, SLOT(ChangeViewMode()) );
connect(windowSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
connect(levelSpinBox,SIGNAL(editingFinished()),this,SLOT(WindowLevelEdited()));
connect(colorMapComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateColorMap()));
connect(presetComboBox,SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateWindowLevel()));
+ connect(slicingPresetComboBox, SIGNAL(currentIndexChanged(int)),this,SLOT(UpdateSlicingPreset()));
connect(inverseButton,SIGNAL(clicked()),this,SLOT(SwitchWindowLevel()));
connect(applyWindowLevelToAllButton,SIGNAL(clicked()),this,SLOT(ApplyWindowLevelToAllImages()));
-
connect(this,SIGNAL(customContextMenuRequested(QPoint)),this,SLOT(ShowContextMenu(QPoint)));
- connect(linkPanel,SIGNAL(addLink(QString,QString)),this,SLOT(AddLink(QString,QString)));
+ connect(linkPanel,SIGNAL(addLink(QString,QString,bool)),this,SLOT(AddLink(QString,QString,bool)));
connect(linkPanel,SIGNAL(removeLink(QString,QString)),this,SLOT(RemoveLink(QString,QString)));
connect(overlayPanel,SIGNAL(VFPropertyUpdated(int,int,int,int,double,double,double)),this,SLOT(SetVFProperty(int,int,int,int,double,double,double)));
- connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int)),this,SLOT(SetOverlayProperty(int)));
- connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double)),
- this,SLOT(SetFusionProperty(int,int,int,double,double)));
+ connect(overlayPanel,SIGNAL(OverlayPropertyUpdated(int,int,double,double)),
+ this,SLOT(SetOverlayProperty(int,int,double,double)));
+ connect(overlayPanel,SIGNAL(FusionPropertyUpdated(int,int,int,double,double, bool)),
+ this,SLOT(SetFusionProperty(int,int,int,double,double, bool)));
connect(landmarksPanel,SIGNAL(UpdateRenderWindows()),this,SLOT(UpdateRenderWindows()));
+ connect(landmarksPanel,SIGNAL(SelectedPointChanged()),this,SLOT(GoToLandmark()));
+
+ connect(overlayPanel,SIGNAL(FusionSequencePropertyUpdated(int, bool, unsigned int, bool)),
+ this,SLOT(SetFusionSequenceProperty(int, bool,unsigned int, bool)));
+
playMode = 0;//pause
mFrameRate = 10;
//timerMemory->setInterval(5);
connect(timerMemory, SIGNAL(timeout()), this, SLOT(UpdateMemoryUsage()));
timerMemory->start(2000);
+
}
//------------------------------------------------------------------------------
void vvMainWindow::show()
bool ok;
int index=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
- mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
+ mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
if (ok) {
vvMidPosition midp;
midp.slicer_manager = mSlicerManagers[index];
brush.setColor(QColor(contour->r*255,contour->g*255,contour->b*255));
brush.setStyle(Qt::SolidPattern);
item->setData(COLUMN_IMAGE_NAME,Qt::BackgroundRole,brush);
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
+ // item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,contour->structure_name.c_str());
for (int j = 1; j <= 4; j++)
item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(image_index)->data(j,Qt::CheckStateRole));
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::AddDCStructContour(int index, QString file)
+{
+ vvMeshReader reader;
+ reader.SetFilename(file.toStdString());
+ vvStructSelector selector;
+ selector.SetStructures(reader.GetROINames());
+ if (!mSlicerManagers[index]->GetVF().IsNull())
+ selector.EnablePropagationCheckBox();
+ if (selector.exec()) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ reader.SetSelectedItems(selector.getSelectedItems());
+ reader.SetImage(mSlicerManagers[index]->GetImage());
+ if (selector.PropagationEnabled())
+ reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
+ reader.Update();
+ std::vector<vvMesh::Pointer> contours=reader.GetOutput();
+ for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
+ i!=contours.end(); i++)
+ AddContour(index,*i,selector.PropagationEnabled());
+ QApplication::restoreOverrideCursor();
+ }
+}
+
//------------------------------------------------------------------------------
void vvMainWindow::OpenDCStructContour()
{
if (file.isNull())
return;
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
- vvMeshReader reader;
- reader.SetFilename(file.toStdString());
- vvStructSelector selector;
- selector.SetStructures(reader.GetROINames());
- if (!mSlicerManagers[index]->GetVF().IsNull())
- selector.EnablePropagationCheckBox();
- if (selector.exec()) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- reader.SetSelectedItems(selector.getSelectedItems());
- reader.SetImage(mSlicerManagers[index]->GetImage());
- if (selector.PropagationEnabled())
- reader.SetPropagationVF(mSlicerManagers[index]->GetVF());
- reader.Update();
- std::vector<vvMesh::Pointer> contours=reader.GetOutput();
- for (std::vector<vvMesh::Pointer>::iterator i=contours.begin();
- i!=contours.end(); i++)
- AddContour(index,*i,selector.PropagationEnabled());
- QApplication::restoreOverrideCursor();
- }
+ AddDCStructContour(index, file);
}
}
//------------------------------------------------------------------------------
if (!mSlicerManagers[index]->GetVF().IsNull()) {
bool ok;
int ref = QInputDialog::getInteger(this,"Chose reference phase","Reference phase",0,0,\
- mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
+ mSlicerManagers[index]->GetImage()->GetVTKImages().size()-1,1,&ok);
if (ok) {
WarpImage(mSlicerManagers[index],ref);
}
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
QFileInfo info(selected_slicer->GetFileName().c_str());
vvImageWarp warp(selected_slicer->GetImage(),selected_slicer->GetVF(),
- reference_phase,this);
+ reference_phase,this);
if (warp.ComputeWarpedImage()) {
AddImage(warp.GetWarpedImage(),info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_warped.mhd");
AddImage(warp.GetDiffImage() ,info.path().toStdString()+"/"+info.completeBaseName().toStdString()+"_diff.mhd");
for (int i = 0; i < files.size(); i++) {
itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
reader->SetFileName(files[i].toStdString().c_str());
reader->ReadImageInformation();
if (reader) {
currentSpacing[j] = reader->GetSpacing(j);
currentSize[j] = reader->GetDimensions(j);
} else if (currentDim != reader->GetNumberOfDimensions()
- || currentSpacing[j] != reader->GetSpacing(j)
- || currentSize[j] != (int)reader->GetDimensions(j)
- || currentOrigin[j] != reader->GetOrigin(j)) {
- QString error = "Cannot read file (too different from others ";
- error += files[i].toStdString().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- IsOk = false;
- break;
+ || currentSpacing[j] != reader->GetSpacing(j)
+ || currentSize[j] != (int)reader->GetDimensions(j)
+ || currentOrigin[j] != reader->GetOrigin(j)) {
+ QString error = "Cannot read file (too different from others ";
+ error += files[i].toStdString().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ IsOk = false;
+ break;
}
}
if (IsOk)
mInputPathName = itksys::SystemTools::GetFilenamePath(files[0].toStdString()).c_str();
std::vector<std::string> vector;
- unsigned int currentDim = 0;
- std::vector<double> currentSpacing;
- std::vector<int> currentSize;
- std::vector<double> currentOrigin;
-
- for (int i = 0; i < files.size(); i++) {
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- files[i].toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- if (reader) {
- reader->SetFileName(files[i].toStdString().c_str());
- reader->ReadImageInformation();
- if (i == 0)
- currentDim = reader->GetNumberOfDimensions();
- bool IsOk = true;
- for (unsigned int j = 0; j < currentDim; j++) {
- if (i == 0) {
- if (j == 0) {
- currentSpacing.resize(currentDim);
- currentSize.resize(currentDim);
- currentOrigin.resize(currentDim);
- }
- currentOrigin[j] = reader->GetOrigin(j);
- currentSpacing[j] = reader->GetSpacing(j);
- currentSize[j] = reader->GetDimensions(j);
- } else if (currentDim != reader->GetNumberOfDimensions()
- || currentSpacing[j] != reader->GetSpacing(j)
- || currentSize[j] != (int)reader->GetDimensions(j)
- || currentOrigin[j] != reader->GetOrigin(j)) {
- QString error = "Cannot read file (too different from others ";
- error += files[i].toStdString().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- IsOk = false;
- break;
- }
- }
- if (IsOk)
- vector.push_back(files[i].toStdString());
- } else {
- QString error = "Cannot read file info for ";
- error += files[i].toStdString().c_str();
- error += "\n";
- error += "Maybe you're trying to open an image in an unsupported format?\n";
- QMessageBox::information(this,tr("Reading problem"),error);
- }
- }
+ for (int i = 0; i < files.size(); i++)
+ vector.push_back(files[i].toStdString());
sort(vector.begin(),vector.end());
if (vector.size() > 1)
LoadImages(vector, vvImageReader::MERGEDWITHTIME);
{
std::vector<std::string> files;
- std::cout << "dicomSeriesSelector " << std::endl;
+ //std::cout << "dicomSeriesSelector " << std::endl;
if (dicomSeriesSelector->exec() == QDialog::Accepted) {
files = *(dicomSeriesSelector->GetFilenames());
LoadImages(files, vvImageReader::DICOM);
}
-}
+}
+#ifdef CLITK_USE_PACS_CONNECTION
+void vvMainWindow::ConnectPacs()
+{
+ std::vector<std::string> files;
+
+ //std::cout << "dicomSeriesSelector " << std::endl;
+if (PacsConnection->exec() == QDialog::Accepted) {
+ for (int i = 0; i < PacsConnection->getSeriesCount(); i++)
+ {
+ files = PacsConnection->getFileNames(i);
+ LoadImages(files, vvImageReader::DICOM);
+ }
+ PacsConnection->clearMove();
+ }
+ }
+
+#endif
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
int numberofsuccesulreads=0;
//open images as 1 or multiples
for (int i = 0; i < fileSize; i++) {
-
progress.SetText("Opening " + files[i]);
progress.SetProgress(i,fileSize);
qApp->processEvents();
else {
SetImageSucceed = imageManager->SetImages(files,filetype, number);
}
+
if (!SetImageSucceed) {
QApplication::restoreOverrideCursor();
QString error = "Cannot open file \n";
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setToolTip(tr("reload image"));
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->addTopLevelItem(item);
DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
//set the id of the image
- QString id = files[i].c_str() + QString::number(mSlicerManagers.size()-1);
+ QString id = QDir::current().absoluteFilePath(files[i].c_str()) + QString::number(mSlicerManagers.size()-1);
item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
mSlicerManagers.back()->SetId(id.toStdString());
linkPanel->addImage(imageManager->GetFileName(), id.toStdString());
connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this,SLOT(CurrentImageChanged(std::string)));
+ this,SLOT(CurrentImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
- this, SLOT(CurrentPickedImageChanged(std::string)));
+ this, SLOT(CurrentPickedImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ this,SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
+ this, SLOT(VectorChanged(int,double,double,double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
+ this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
- this,SLOT(WindowLevelChanged(double, double, int, int)));
+ this, SLOT(FusionChanged(int,double)));
+ connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
+ this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(UpdateTSlice(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(ImageInfoChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(),SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+
InitSlicers();
numberofsuccesulreads++;
}
double range[2];
mSlicerManagers.back()->GetImage()->GetFirstVTKImageData()->GetScalarRange(range);
if ((range[0] == 0) && (range[1] == 1)) {
- presetComboBox->setCurrentIndex(5);// binary
+ presetComboBox->setCurrentIndex(WL_BINARY);// binary
} else {
// TODO
}
}
DataTree->topLevelItem(selected)->setSelected(1);
mCurrentSelectedImageId = id;
+
+ landmarksPanel->SetCurrentLandmarks(mSlicerManagers[selected]->GetLandmarks(),
+ mSlicerManagers[selected]->GetTSlice());
+ landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+ landmarksPanel->SetCurrentImage(mSlicerManagers[selected]->GetFileName().c_str());
+
emit SelectedImageHasChanged(mSlicerManagers[selected]);
}
//------------------------------------------------------------------------------
actionSave_As->setEnabled(1);
actionAdd_VF_to_current_Image->setEnabled(1);
actionAdd_fusion_image->setEnabled(1);
+ actionAdd_overlay_image_to_current_image->setEnabled(1);
+ actionAdd_USSequence_toCT->setEnabled(1);
actionNorth_East_Window->setEnabled(1);
actionNorth_West_Window->setEnabled(1);
actionSouth_East_Window->setEnabled(1);
colorMapComboBox->setEnabled(1);
for (int i = 0; i < DataTree->topLevelItem(index)->childCount(); i++) {
if (DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "overlay" ||
- DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion") {
- colorMapComboBox->setEnabled(0);
- break;
+ DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusion" ||
+ DataTree->topLevelItem(index)->child(i)->data(1,Qt::UserRole).toString() == "fusionSequence") {
+ colorMapComboBox->setEnabled(0);
+ break;
}
}
QString inputSizeInBytes;
QString image = DataTree->selectedItems()[0]->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- if (mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size() > 1 || playMode == 1) {
+ int nframes = mSlicerManagers[index]->GetSlicer(0)->GetTMax();
+
+ if (nframes > 1 || playMode == 1) {
playButton->setEnabled(1);
frameRateLabel->setEnabled(1);
frameRateSpinBox->setEnabled(1);
//read image header
int NPixel = 1;
+ int tSlice = 0;
vvImage::Pointer imageSelected;
if (DataTree->topLevelItem(index) == DataTree->selectedItems()[0]) {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "vector") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetVF();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "overlay") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetOverlay();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetOverlayTSlice();
} else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusion") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
+ }
+ else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "fusionSequence") {
+ imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetFusion();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetFusionTSlice();
}
else if (DataTree->selectedItems()[0]->data(1,Qt::UserRole).toString() == "contour") {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
}
else {
imageSelected = mSlicerManagers[index]->GetSlicer(0)->GetImage();
+ tSlice = mSlicerManagers[index]->GetSlicer(0)->GetTSlice();
}
dimension = imageSelected->GetNumberOfDimensions();
NPixel *= inputSize[i];
}
inputSizeInBytes = GetSizeInBytes(imageSelected->GetActualMemorySize()*1000);
-
+
QString dim = QString::number(dimension) + " (";
dim += pixelType + ")";
infoPanel->setFileName(image);
+ std::string creationImageTimeValue("No creation time");
+ itk::ExposeMetaData< std::string > (*imageSelected->GetFirstMetaDataDictionary(), "creationImageTime", creationImageTimeValue);
+ infoPanel->setImageCreationTime(QString(creationImageTimeValue.c_str()));
infoPanel->setDimension(dim);
infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
infoPanel->setOrigin(GetVectorDoubleAsString(origin));
infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
- transformation = imageSelected->GetTransform()->GetMatrix();
- infoPanel->setTransformation(Get4x4MatrixDoubleAsString(transformation));
-
- landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
- landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
- landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
-
- overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
- for (int i = 0; i < 4; i++) {
- if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
- mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
- break;
- }
- }
- windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
- levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
- presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
- colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
- infoPanel->setFileName(image);
- infoPanel->setDimension(dim);
- infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
- infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
- infoPanel->setOrigin(GetVectorDoubleAsString(origin));
- infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
- infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
+ transformation = imageSelected->GetTransform()[tSlice]->GetMatrix();
+ infoPanel->setTransformation(clitk::Get4x4MatrixDoubleAsString(transformation).c_str());
landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
- mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetVTKImages().size());
+ mSlicerManagers[index]->GetTSlice());
landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
break;
}
}
- windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
- levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
- presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
- colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
+
+// infoPanel->setFileName(image);
+// infoPanel->setDimension(dim);
+// infoPanel->setSizePixel(GetVectorIntAsString(inputSize));
+// infoPanel->setSizeMM(GetVectorDoubleAsString(sizeMM));
+// infoPanel->setOrigin(GetVectorDoubleAsString(origin));
+// infoPanel->setSpacing(GetVectorDoubleAsString(inputSpacing));
+// infoPanel->setNPixel(QString::number(NPixel)+" ("+inputSizeInBytes+")");
+//
+// landmarksPanel->SetCurrentLandmarks(mSlicerManagers[index]->GetLandmarks(),
+// mSlicerManagers[index]->GetTSlice());
+// landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+// landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
+//
+// overlayPanel->getCurrentImageName(mSlicerManagers[index]->GetFileName().c_str());
+// for (int i = 0; i < 4; i++) {
+// if (DataTree->selectedItems()[0]->data(i+1,Qt::CheckStateRole).toInt() > 0 || i == 3) {
+// mSlicerManagers[index]->UpdateInfoOnCursorPosition(i);
+// break;
+// }
+// }
+ WindowLevelChanged();
+
+ slicingPresetComboBox->setCurrentIndex(mSlicerManagers[index]->GetSlicingPreset());
if (mSlicerManagers[index]->GetSlicer(0)->GetVF()) {
overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
overlayPanel->getVFProperty(mSlicerManagers[index]->GetSlicer(0)->GetVFSubSampling(),
- mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
- mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
+ mSlicerManagers[index]->GetSlicer(0)->GetVFScale(),
+ mSlicerManagers[index]->GetSlicer(0)->GetVFLog());
} else {
overlayPanel->getVFName(mSlicerManagers[index]->GetVFName().c_str());
overlayPanel->getVFProperty(-1,-1,-1);
}
if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
- overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor());
} else {
overlayPanel->getOverlayName(mSlicerManagers[index]->GetOverlayName().c_str());
- overlayPanel->getOverlayProperty(-1);
}
-
+
if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
- overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
- mSlicerManagers[index]->GetFusionThresholdOpacity(),
- mSlicerManagers[index]->GetFusionColorMap(),
- mSlicerManagers[index]->GetFusionWindow(),
- mSlicerManagers[index]->GetFusionLevel());
} else {
overlayPanel->getFusionName(mSlicerManagers[index]->GetFusionName().c_str());
- overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
}
}
}
//------------------------------------------------------------------------------
void vvMainWindow::ChangeViewMode()
{
- QList<int> size;
+ typedef struct _SIZE{
+ QSplitter* splitter;
+ QList<int> size1, size2;
+ int cols[3];
+ }SplitterSize;
+ SplitterSize sizes[4];
+ sizes[0].splitter = OSplitter;
+ sizes[0].size1.push_back(1);
+ sizes[0].size1.push_back(0);
+ sizes[0].size2.push_back(1);
+ sizes[0].size2.push_back(0);
+ sizes[0].cols[0] = 2;
+ sizes[0].cols[1] = 3;
+ sizes[0].cols[2] = 4;
+
+ sizes[1].splitter = ESplitter;
+ sizes[1].size1.push_back(0);
+ sizes[1].size1.push_back(1);
+ sizes[1].size2.push_back(1);
+ sizes[1].size2.push_back(0);
+ sizes[1].cols[0] = 1;
+ sizes[1].cols[1] = 3;
+ sizes[1].cols[2] = 4;
+
+ sizes[2].splitter = OSplitter;
+ sizes[2].size1.push_back(1);
+ sizes[2].size1.push_back(0);
+ sizes[2].size2.push_back(0);
+ sizes[2].size2.push_back(1);
+ sizes[2].cols[0] = 1;
+ sizes[2].cols[1] = 2;
+ sizes[2].cols[2] = 4;
+
+ sizes[3].splitter = ESplitter;
+ sizes[3].size1.push_back(0);
+ sizes[3].size1.push_back(1);
+ sizes[3].size2.push_back(0);
+ sizes[3].size2.push_back(1);
+ sizes[3].cols[0] = 1;
+ sizes[3].cols[1] = 2;
+ sizes[3].cols[2] = 3;
+
+ int slicer = mSlicerManagers[mCurrentPickedImageIndex]->GetSelectedSlicer();
if (viewMode == 1) {
- viewMode = 0;
- size.push_back(1);
- size.push_back(0);
- splitter_3->setSizes(size);
- OSplitter->setSizes(size);
- DataTree->setColumnHidden(2,1);
- DataTree->setColumnHidden(3,1);
- DataTree->setColumnHidden(4,1);
+ if (slicer >= 0) {
+ viewMode = 0;
+ splitter_3->setSizes(sizes[slicer].size1);
+ sizes[slicer].splitter->setSizes(sizes[slicer].size2);
+ DataTree->setColumnHidden(sizes[slicer].cols[0],1);
+ DataTree->setColumnHidden(sizes[slicer].cols[1],1);
+ DataTree->setColumnHidden(sizes[slicer].cols[2],1);
+ }
} else {
- viewMode = 1;
- size.push_back(1);
- size.push_back(1);
- splitter_3->setSizes(size);
- OSplitter->setSizes(size);
- DataTree->setColumnHidden(2,0);
- DataTree->setColumnHidden(3,0);
- DataTree->setColumnHidden(4,0);
+ QList<int> size;
+ if (slicer >= 0) {
+ viewMode = 1;
+ size.push_back(1);
+ size.push_back(1);
+ splitter_3->setSizes(size);
+ sizes[slicer].splitter->setSizes(size);
+ DataTree->setColumnHidden(sizes[slicer].cols[0],0);
+ DataTree->setColumnHidden(sizes[slicer].cols[1],0);
+ DataTree->setColumnHidden(sizes[slicer].cols[2],0);
+ }
}
UpdateRenderWindows();
/*
** the associated Slicer to redraw crosses.
*/
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
- if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
- mSlicerManagers[i]->GetSlicer(0)->Render();
- if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
- mSlicerManagers[i]->GetSlicer(2)->Render();
+ // if (DataTree->topLevelItem(i)->data(COLUMN_UL_VIEW,Qt::CheckStateRole).toInt() > 1)
+ mSlicerManagers[i]->GetSlicer(0)->Render();
+ mSlicerManagers[i]->GetSlicer(1)->Render();
+ // if (DataTree->topLevelItem(i)->data(COLUMN_DL_VIEW,Qt::CheckStateRole).toInt() > 1)
+ mSlicerManagers[i]->GetSlicer(2)->Render();
+ mSlicerManagers[i]->GetSlicer(3)->Render();
}
}
//------------------------------------------------------------------------------
}
//------------------------------------------------------------------------------
-//------------------------------------------------------------------------------
-QString vvMainWindow::Get4x4MatrixDoubleAsString(vtkSmartPointer<vtkMatrix4x4> matrix)
-{
- std::ostringstream strmatrix;
-
- for (unsigned int i = 0; i < 4; i++) {
- for (unsigned int j = 0; j < 4; j++) {
- strmatrix.flags(ios::showpos);
- strmatrix.width(10);
- strmatrix.precision(3);
- strmatrix.setf(ios::fixed,ios::floatfield);
- strmatrix.fill(' ');
- strmatrix << std::left << matrix->GetElement(i, j);
- //strmatrix.width(10);
- strmatrix << " ";
- }
- strmatrix << std::endl;
- }
- QString result = strmatrix.str().c_str();
- return result;
-}
-//------------------------------------------------------------------------------
-
//------------------------------------------------------------------------------
QString vvMainWindow::GetVectorDoubleAsString(std::vector<double> vectorDouble)
{
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
+//this actually returns the SlicerManager index!
int vvMainWindow::GetSlicerIndexFromItem(QTreeWidgetItem* item)
{
QString id = item->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
//------------------------------------------------------------------------------
void vvMainWindow::DisplaySliders(int slicer, int window)
{
+ if(!mSlicerManagers[slicer]->GetSlicer(window)->GetRenderer()->GetDraw())
+ return;
+
int range[2];
mSlicerManagers[slicer]->GetSlicer(window)->GetSliceRange(range);
int position = mSlicerManagers[slicer]->GetSlicer(window)->GetSlice();
-
- int tRange[2];
- tRange[0] = 0;
- tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
- int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetTSlice();
- bool showHorizontal = false;
- bool showVertical = false;
- if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
- || (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 2
- && mSlicerManagers[slicer]->GetType() != vvImageReader::IMAGEWITHTIME
- && mSlicerManagers[slicer]->GetType() != vvImageReader::MERGEDWITHTIME))
- showVertical = true;
- if (mSlicerManagers[slicer]->GetSlicer(window)->GetImage()->GetNumberOfDimensions() > 3
- || mSlicerManagers[slicer]->GetType() == vvImageReader::IMAGEWITHTIME
- || mSlicerManagers[slicer]->GetType() == vvImageReader::MERGEDWITHTIME)
- showHorizontal = true;
-
- if (showVertical)
+ if (range[1]>0)
verticalSliders[window]->show();
else
verticalSliders[window]->hide();
verticalSliders[window]->setRange(range[0],range[1]);
verticalSliders[window]->setValue(position);
- if (showHorizontal)
+ int tRange[2];
+ tRange[0] = 0;
+ tRange[1] = mSlicerManagers[slicer]->GetSlicer(window)->GetTMax();
+ if (tRange[1]>0)
horizontalSliders[window]->show();
else
horizontalSliders[window]->hide();
horizontalSliders[window]->setRange(tRange[0],tRange[1]);
+ int tPosition = mSlicerManagers[slicer]->GetSlicer(window)->GetMaxCurrentTSlice();
horizontalSliders[window]->setValue(tPosition);
}
//------------------------------------------------------------------------------
QString warning = "Do you really want to close the overlay : ";
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
QMessageBox msgBox(QMessageBox::Warning, tr("Close Overlay"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
int overlay_index=0;
for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++) {
if (DataTree->topLevelItem(index)->\
- child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
+ child(child)->data(1,Qt::UserRole).toString().toStdString() == overlay_type)
overlay_index++;
if (DataTree->topLevelItem(index)->child(child) == item) break;
}
+ if (overlay_type=="fusionSequence") {
+ //removing the overlay sequence in a fusion sequence visualization mode
+ //reset the transforms
+ overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
+
+ //unlink and untie the slicer managers
+ RemoveLink(mSlicerManagers[index]->GetId().c_str(), mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetId().c_str());
+ mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
+ for (unsigned i=0 ; i<4 ; i++) {
+ mSlicerManagers[index]->GetSlicer(i)->SetFusionSequenceCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetSlicer(i)->SetFusionSequenceCode(-1);
+ }
+
+ }
mSlicerManagers[index]->RemoveActor(overlay_type, overlay_index-1);
mSlicerManagers[index]->SetColorMap(0);
DataTree->topLevelItem(index)->takeChild(DataTree->topLevelItem(index)->indexOfChild(item));
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
warning += "\nThis is the last image, you're about to close vv !!!";
QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close vv"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
QString warning = "Do you really want to close the image : ";
warning += item->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
QMessageBox msgBox(QMessageBox::Warning, tr("Close Image"),
- warning, 0, this);
+ warning, 0, this);
msgBox.addButton(tr("Close"), QMessageBox::AcceptRole);
msgBox.addButton(tr("Cancel"), QMessageBox::RejectRole);
if (msgBox.exec() == QMessageBox::AcceptRole) {
for (int i = 0; i < index; i++) {
Manageriter++;
}
+ //if the slicer manager was involved in a fusion sequence visualization...
+ if ( mSlicerManagers[index]->IsInvolvedInFusionSequence() ) {
+ //in both cases, close the overlay: find it... and close it
+ //ideally, I should duplicate the code, and avoid calling CloseImage, since this pops up another interactive box
+ QTreeWidgetItem* overlayItem;
+ if (mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ for (unsigned i=0 ; i<item->childCount() ; i++) {
+ overlayItem = item->child(i);
+ this->CloseImage( overlayItem, 0 );
+ }
+ }
+ else {
+ QTreeWidgetItem* linkedItem = this->GetItemFromSlicerManager( mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()] );
+ for (unsigned i=0 ; i<linkedItem->childCount() ; i++) {
+ overlayItem = linkedItem->child(i);
+ this->CloseImage( overlayItem, 0 );
+ }
+ }
+
+ /* -- this is normally already done when closing the overlay.
+ //reset the transforms
+ overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
+
+ //unlink and untie the slicer managers
+ RemoveLink(mSlicerManagers[index]->GetId().c_str(), mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetId().c_str());
+ mSlicerManagers[index]->SetFusionSequenceInvolvmentCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->SetFusionSequenceInvolvmentCode(-1);
+ for (unsigned i=0 ; i<4 ; i++) {
+ mSlicerManagers[index]->GetSlicer(i)->SetFusionSequenceCode(-1);
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->GetSlicer(i)->SetFusionSequenceCode(-1);
+ }
+ */
+ }
+
linkPanel->removeImage(index);
mSlicerManagers[index]->RemoveActors();
+
+ //remove the slicer manager
delete mSlicerManagers[index];
mSlicerManagers.erase(Manageriter);
int index = GetSlicerIndexFromItem(item);
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
QString role=item->data(1,Qt::UserRole).toString();
- if ( role == "vector"){
+ if ( role == "vector") {
mSlicerManagers[index]->ReloadVF();
}
- else if (role == "overlay"){
+ else if (role == "overlay") {
mSlicerManagers[index]->ReloadOverlay();
}
- else if (role == "fusion"){
+ else if (role == "fusion") {
mSlicerManagers[index]->ReloadFusion();
}
- else{
+ else if (role == "fusionSequence") {
+ //both versions of the secondary sequence must be updated.
+ mSlicerManagers[index]->ReloadFusionSequence();
+ mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->Reload();
+ }
+ else {
mSlicerManagers[index]->Reload();
+ //if we update the secondary sequence, then the overlay of the main sequence should also be updated
+ if (mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence()) mSlicerManagers[mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()]->ReloadFusionSequence();
}
// Update view and info
ImageInfoChanged();
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::WindowLevelChanged(double window, double level,int preset,int colormap)
+//called when AddOverlayImage, AddFusionSequence
+//or when UpdateWindowLevel() is called ; when slicerManager emits WindowLevelChanged
+//when ImageInfoChanged() is called
+void vvMainWindow::WindowLevelChanged()
{
- windowSpinBox->setValue(window);
- levelSpinBox->setValue(level);
- colorMapComboBox->setCurrentIndex(colormap);
- presetComboBox->setCurrentIndex(preset);
+ // Base image
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ if(index==-1) return;
+ windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
+ levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
+ colorMapComboBox->setCurrentIndex(mSlicerManagers[index]->GetColorMap());
+ presetComboBox->setCurrentIndex(mSlicerManagers[index]->GetPreset());
+
+ // Overlay image
+ if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay())
+ overlayPanel->getOverlayProperty(mSlicerManagers[index]->GetOverlayColor(),
+ mSlicerManagers[index]->GetLinkOverlayWindowLevel(),
+ mSlicerManagers[index]->GetOverlayColorWindow(),
+ mSlicerManagers[index]->GetOverlayColorLevel());
+ else
+ overlayPanel->getOverlayProperty(-1,0,0.,0.);
+
+ // Fusion & SequenceFusion image
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
+ overlayPanel->getFusionProperty(mSlicerManagers[index]->GetFusionOpacity(),
+ mSlicerManagers[index]->GetFusionThresholdOpacity(),
+ mSlicerManagers[index]->GetFusionColorMap(),
+ mSlicerManagers[index]->GetFusionWindow(),
+ mSlicerManagers[index]->GetFusionLevel());
+ if (mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ overlayPanel->getFusionSequenceProperty(mSlicerManagers[index]->GetFusionSequenceFrameIndex(),
+ mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag(),
+ mSlicerManagers[index]->GetFusionSequenceNbFrames(),
+ mSlicerManagers[index]->GetFusionSequenceTemporalSyncFlag());
+ }
+ }
+ else if ( mSlicerManagers[index]->IsSecondarySequenceOfFusionSequence() ) {
+ //if the image is involved in a fusion sequence, preserve the overlay panel!
+ int ind = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ overlayPanel->getFusionProperty(mSlicerManagers[ind]->GetFusionOpacity(),
+ mSlicerManagers[ind]->GetFusionThresholdOpacity(),
+ mSlicerManagers[ind]->GetFusionColorMap(),
+ mSlicerManagers[ind]->GetFusionWindow(),
+ mSlicerManagers[ind]->GetFusionLevel());
+ overlayPanel->getFusionSequenceProperty(mSlicerManagers[ind]->GetFusionSequenceFrameIndex(),
+ mSlicerManagers[ind]->GetFusionSequenceSpatialSyncFlag(),
+ mSlicerManagers[ind]->GetFusionSequenceNbFrames(),
+ mSlicerManagers[ind]->GetFusionSequenceTemporalSyncFlag());
+ }
+ else
+ {
+ overlayPanel->getFusionProperty(-1, -1, -1, -1, -1);
+ overlayPanel->getFusionSequenceProperty(-1, false, 0, false);
+ }
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::WindowLevelEdited()
{
- presetComboBox->setCurrentIndex(6);
+ presetComboBox->setCurrentIndex(WL_USER);
+ UpdateWindowLevel();
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SetWindowLevel(double w, double l)
+{
+ windowSpinBox->setValue(w);
+ levelSpinBox->setValue(l);
+ presetComboBox->setCurrentIndex(WL_USER);
+ colorMapComboBox->setCurrentIndex(0);
UpdateWindowLevel();
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateWindowLevel()
{
if (DataTree->selectedItems().size()) {
- if (presetComboBox->currentIndex() == 7) //For ventilation
+ if (presetComboBox->currentIndex() == WL_VENTILATION) //For ventilation
colorMapComboBox->setCurrentIndex(5);
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
mSlicerManagers[index]->SetColorWindow(windowSpinBox->value());
mSlicerManagers[index]->SetColorLevel(levelSpinBox->value());
mSlicerManagers[index]->SetPreset(presetComboBox->currentIndex());
mSlicerManagers[index]->Render();
- windowSpinBox->setValue(mSlicerManagers[index]->GetColorWindow());
- levelSpinBox->setValue(mSlicerManagers[index]->GetColorLevel());
+ WindowLevelChanged();
+ }
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::UpdateSlicingPreset()
+{
+ if (DataTree->selectedItems().size()) {
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ mSlicerManagers[index]->SetSlicingPreset(vvSlicerManager::SlicingPresetType(slicingPresetComboBox->currentIndex()));
}
}
//------------------------------------------------------------------------------
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
int window = mSlicerManagers[index]->GetColorWindow();
- presetComboBox->setCurrentIndex(6);
+ presetComboBox->setCurrentIndex(WL_USER);
windowSpinBox->setValue(-window);
UpdateWindowLevel();
}
//------------------------------------------------------------------------------
void vvMainWindow::ApplyWindowLevelToAllImages()
{
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ if(index==-1) return;
+ double window = mSlicerManagers[index]->GetColorWindow();
+ double level = mSlicerManagers[index]->GetColorLevel();
+
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i] == NULL)
continue;
- mSlicerManagers[i]->SetColorWindow(windowSpinBox->value());
- mSlicerManagers[i]->SetColorLevel(levelSpinBox->value());
- mSlicerManagers[i]->SetPreset(6);
+ mSlicerManagers[i]->SetColorWindow(window);
+ mSlicerManagers[i]->SetColorLevel(level);
+ mSlicerManagers[i]->SetPreset(WL_USER);
+ mSlicerManagers[i]->Render();
+ }
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::ApplyWindowToSetOfImages(double window, unsigned int indexMin, unsigned int indexMax)
+{
+ for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i] == NULL)
+ continue;
+ mSlicerManagers[i]->SetColorWindow(window);
+ mSlicerManagers[i]->SetPreset(WL_USER);
+ mSlicerManagers[i]->Render();
+ }
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::ApplyLevelToSetOfImages(double level, unsigned int indexMin, unsigned int indexMax)
+{
+ for (unsigned int i = indexMin; i <= indexMax && i < mSlicerManagers.size(); i++) {
+ if (mSlicerManagers[i] == NULL)
+ continue;
+ mSlicerManagers[i]->SetColorLevel(level);
+ mSlicerManagers[i]->SetPreset(WL_USER);
mSlicerManagers[i]->Render();
}
}
{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (mSlicerManagers[i]->GetId() == id) {
- //mSlicerManagers[i]->SetTSlice(temps);
mSlicerManagers[i]->GetSlicer(slicer)->SetCurrentPosition(x,y,z,temps);
mSlicerManagers[i]->UpdateViews(0,slicer);
break;
contextActions[1]->setEnabled(1);
contextActions[2]->setEnabled(
DataTree->itemWidget(DataTree->selectedItems()[0],
- COLUMN_RELOAD_IMAGE)->isEnabled());
+ COLUMN_RELOAD_IMAGE)->isEnabled());
contextActions[3]->setEnabled(1);
contextActions[5]->setEnabled(1);
contextActions[6]->setEnabled(1);
return;
}
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load Overlay image"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddOverlayImage(index,file);
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+ AddOverlayImage(index,vecFileNames,vvImageReader::IMAGE);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::AddOverlayImage(int index, QString file)
+void vvMainWindow::AddOverlayImage(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
{
-
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- int dimension = reader->GetNumberOfDimensions();
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- vvProgressDialog progress("Opening " + file.toStdString());
- qApp->processEvents();
-
- std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetOverlay(file.toStdString(),dimension, component)) {
- //create an item in the tree with good settings
- QTreeWidgetItem *item = new QTreeWidgetItem();
- item->setData(0,Qt::UserRole,file.toStdString().c_str());
- item->setData(1,Qt::UserRole,tr("overlay"));
- QFileInfo fileinfo(file); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
+ QString file(fileNames[0].c_str());
+ if (QFile::exists(file))
+ {
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(fileNames[0].c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ int dimension = reader->GetNumberOfDimensions();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening " + file.toStdString());
qApp->processEvents();
- for (int j = 1; j <= 4; j++) {
- item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
- }
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+ if (mSlicerManagers[index]->SetOverlay(fileNames,dimension, component,type)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("overlay"));
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("overlay").c_str());
+ qApp->processEvents();
- //Create the buttons for reload and close
- qApp->processEvents();
- QTreePushButton* cButton = new QTreePushButton;
- cButton->setItem(item);
- cButton->setColumn(COLUMN_CLOSE_IMAGE);
- cButton->setToolTip(tr("close image"));
- cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
- connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-
- QTreePushButton* rButton = new QTreePushButton;
- rButton->setItem(item);
- rButton->setColumn(COLUMN_RELOAD_IMAGE);
- rButton->setToolTip(tr("reload image"));
- rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
- connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
-
- DataTree->topLevelItem(index)->setExpanded(1);
- DataTree->topLevelItem(index)->addChild(item);
- DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
- DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
-
- //set the id of the image
- QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
- item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
- UpdateTree();
- qApp->processEvents();
- ImageInfoChanged();
- QApplication::restoreOverrideCursor();
- } else {
- QApplication::restoreOverrideCursor();
- QString error = "Cannot import the new image.\n";
- error += mSlicerManagers[index]->GetLastError().c_str();
- QMessageBox::information(this,tr("Problem reading image !"),error);
- }
-}
-//------------------------------------------------------------------------------
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
-//------------------------------------------------------------------------------
-void vvMainWindow::AddROI(int index, QString file)
-{
- /*
- // Get slice manager
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
- // Load image
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+ ImageInfoChanged();
+ QApplication::restoreOverrideCursor();
+
+ // Update the display to update, e.g., the sliders
+ for(int i=0; i<4; i++)
+ DisplaySliders(index, i);
+ } else {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
+ QMessageBox::information(this,tr("Problem reading image !"),error);
+ }
+ WindowLevelChanged();
+ }
+ else
+ QMessageBox::information(this,tr("Problem reading Overlay !"),"File doesn't exist!");
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvMainWindow::AddROI(int index, QString file)
+{
+ /*
+ // Get slice manager
+
+ // Load image
vvImageReader * mReader = new vvImageReader;
mReader->SetInputFilename(filename.toStdString());
mReader->Update(IMAGE);
if (mReader->GetLastError().size() != 0) {
- std::cerr << "Error while reading " << filename.toStdString() << std::endl;
- QString error = "Cannot open file \n";
- error += mReader->GetLastError().c_str();
- QMessageBox::information(this,tr("Reading problem"),error);
- delete mReader;
- return;
+ std::cerr << "Error while reading " << filename.toStdString() << std::endl;
+ QString error = "Cannot open file \n";
+ error += mReader->GetLastError().c_str();
+ QMessageBox::information(this,tr("Reading problem"),error);
+ delete mReader;
+ return;
}
vvImage::Pointer roi = mReader->GetOutput();
//check if one fusion image is added
for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
- if (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") {
- QString error = "Cannot add more than one fusion image\n";
- error += "Please remove first ";
- error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
- QMessageBox::information(this,tr("Problem adding fusion image !"),error);
- return;
+ if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
+ (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
+ QString error = "Cannot add more than one fusion image\n";
+ error += "Please remove first ";
+ error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
+ QMessageBox::information(this,tr("Problem adding fusion image !"),error);
+ return;
}
- QString Extensions = EXTENSIONS;
- Extensions += ";;All Files (*)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load Fusion image"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddFusionImage(index,file);
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Fusion image"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+ AddFusionImage(index,vecFileNames,vvImageReader::IMAGE);
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::AddFusionImage(int index, QString file)
+void vvMainWindow::AddFusionImage(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
{
- mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
- itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
- file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
- reader->SetFileName(file.toStdString().c_str());
- reader->ReadImageInformation();
- std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
- if (reader) {
+ QString file(fileNames[0].c_str());
+ if (QFile::exists(file))
+ {
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ reader->SetFileName(fileNames[0].c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ int dimension = reader->GetNumberOfDimensions();
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
vvProgressDialog progress("Opening fusion");
qApp->processEvents();
std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
- if (mSlicerManagers[index]->SetFusion(file.toStdString(),
- reader->GetNumberOfDimensions(), component)) {
+ if (mSlicerManagers[index]->SetFusion(fileNames,dimension, component,type)) {
//create an item in the tree with good settings
QTreeWidgetItem *item = new QTreeWidgetItem();
item->setData(0,Qt::UserRole,file.toStdString().c_str());
item->setData(1,Qt::UserRole,tr("fusion"));
- QFileInfo fileinfo(filename.c_str()); //Do not show the path
- item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
- item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
- qApp->processEvents();
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusion").c_str());
+ qApp->processEvents();
for (int j = 1; j <= 4; j++) {
item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
cButton->setToolTip(tr("close image"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setToolTip(tr("reload image"));
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->topLevelItem(index)->setExpanded(1);
DataTree->topLevelItem(index)->addChild(item);
qApp->processEvents();
ImageInfoChanged();
QApplication::restoreOverrideCursor();
+
+ // Update the display to update, e.g., the sliders
+ for(int i=0; i<4; i++)
+ DisplaySliders(index, i);
} else {
QApplication::restoreOverrideCursor();
QString error = "Cannot import the new image.\n";
error += mSlicerManagers[index]->GetLastError().c_str();
QMessageBox::information(this,tr("Problem reading image !"),error);
}
- } else {
- QString error = "Cannot import the new image.\n";
- QMessageBox::information(this,tr("Problem reading image !"),error);
+ WindowLevelChanged();
}
+ else
+ QMessageBox::information(this,tr("Problem reading Fusion !"),"File doesn't exist!");
}
//------------------------------------------------------------------------------
-
+//------------------------------------------------------------------------------
+void vvMainWindow::AddLandmarks(int index, std::vector<std::string> files)
+{
+ if (!landmarksPanel->LoadFromFile(files))
+ QMessageBox::information(this,tr("Problem reading Landmarks !"),"File doesn't exist!");
+
+ landmarksPanel->SetCurrentPath(mInputPathName.toStdString());
+ landmarksPanel->SetCurrentImage(mSlicerManagers[index]->GetFileName().c_str());
+}
//------------------------------------------------------------------------------
void vvMainWindow::OpenField()
return;
}
- QString Extensions = "Images ( *.mhd)";
- Extensions += ";;Images ( *.vf)";
- QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
- if (!file.isEmpty())
- AddField(file,index);
+ QString Extensions = "Images ( *.mhd)";
+ Extensions += ";;Images ( *.mha)";
+ Extensions += ";;VF Images ( *.vf)";
+ Extensions += ";;nii Images ( *.nii)";
+ Extensions += ";;nrrd Images ( *.nrrd)";
+ Extensions += ";;nhdr Images ( *.nhdr)";
+ Extensions += ";;All Files (*)";
+ QString file = QFileDialog::getOpenFileName(this,tr("Load deformation field"),mInputPathName,Extensions);
+ if (!file.isEmpty())
+ AddField(file,index);
}
//------------------------------------------------------------------------------
cButton->setToolTip(tr("close vector field"));
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setEnabled(from_disk);
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->topLevelItem(index)->setExpanded(1);
DataTree->topLevelItem(index)->addChild(item);
//------------------------------------------------------------------------------
-void vvMainWindow::SetOverlayProperty(int color)
+void vvMainWindow::SetOverlayProperty(int color, int linked, double window, double level)
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetOverlay()) {
mSlicerManagers[index]->SetOverlayColor(color);
mSlicerManagers[index]->SetColorMap(0);
+ mSlicerManagers[index]->SetLinkOverlayWindowLevel(linked);
+ mSlicerManagers[index]->SetOverlayColorWindow(window);
+ mSlicerManagers[index]->SetOverlayColorLevel(level);
mSlicerManagers[index]->Render();
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
-void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level)
+void vvMainWindow::SetFusionProperty(int opacity, int thresOpacity, int colormap,double window, double level, bool showLegend)
{
int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
mSlicerManagers[index]->SetFusionThresholdOpacity(thresOpacity);
mSlicerManagers[index]->SetFusionWindow(window);
mSlicerManagers[index]->SetFusionLevel(level);
+ mSlicerManagers[index]->SetFusionShowLegend(showLegend);
mSlicerManagers[index]->SetColorMap(0);
mSlicerManagers[index]->Render();
}
}
//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SelectFusionSequence()
+{
+ //get the index of the slicer manager of the main sequence (CT)
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ //check if one overlay image is already associated
+ for (int child = 0; child < DataTree->topLevelItem(index)->childCount(); child++)
+ if ( (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusion") ||
+ (DataTree->topLevelItem(index)->child(child)->data(1,Qt::UserRole).toString() == "fusionSequence") ) {
+ QString error = "Cannot add more than one compared image\n";
+ error += "Please remove first ";
+ error += DataTree->topLevelItem(index)->child(child)->data(COLUMN_IMAGE_NAME,Qt::DisplayRole).toString();
+ QMessageBox::information(this,tr("Problem adding compared image !"),error);
+ return;
+ }
+
+ QString Extensions = EXTENSIONS;
+ Extensions += ";;All Files (*)";
+ QStringList files = QFileDialog::getOpenFileNames(this,tr("Load Overlay image sequence"),mInputPathName,Extensions);
+ if (files.isEmpty())
+ return;
+
+ std::vector<std::string> vecFileNames;
+ for (int i = 0; i < files.size(); i++) {
+ vecFileNames.push_back(files[i].toStdString());
+ }
+
+ //associate the secondary sequence (US) to the main one
+ AddFusionSequence(index,vecFileNames,vvImageReader::MERGEDWITHTIME);
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SelectFusionSequenceCorrespondances() {
+
+ //make sure the index is right?
+ //in the end, I should attach the temporal data to the right sequence!
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ //in case the other sequence got selected, make sure we select the primary sequence
+ if ( (!mSlicerManagers[index]->GetSlicer(0)->GetFusion()) && mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager()>=0 ) {
+ index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ }
+
+ //open a dialog box to find a file
+ //QString Extensions = EXTENSIONS;
+ QString Extensions = ";;All Files (*)";
+ QString fileName = QFileDialog::getOpenFileName(this,tr("Load respiratory signal for fused sequence"),mInputPathName,Extensions);
+ if (fileName.isNull())
+ return;
+
+ //read it as a vector of values
+ vnl_vector<double> tmpVect;
+
+ std::ifstream file;
+ file.open(fileName.toStdString().c_str());
+ tmpVect.read_ascii(file);
+ file.close();
+
+ //if compatible with the fused image sequence (number of entries = nb of entries in main sequence + nb of entries in joint sequence), enable the temporalSync
+ bool signalOK = true;
+ unsigned nbFrameMain = mSlicerManagers[index]->GetImage()->GetTransform().size();
+ unsigned nbFrameSecondary = mSlicerManagers[index]->GetFusionSequenceNbFrames();
+std::cout<<"nbFrameMain = "<<nbFrameMain<<", nbFrameSecondary= "<<nbFrameSecondary<<", signal size: "<<tmpVect.size()<<std::endl;
+ std::vector<unsigned> temporalCorrespondances;
+ if ( tmpVect.size() == nbFrameMain + nbFrameSecondary ) {
+ for (unsigned i=0 ; i<tmpVect.size() ; i++) {
+ if (i<nbFrameMain) { //first part of the file: i -> index in secondary seq.
+ if ( tmpVect(i)<nbFrameSecondary ) temporalCorrespondances.push_back(tmpVect(i));
+ else { signalOK=false; break; } //pointing outside the secondary sequence...
+ }
+ else { //first part of the file -> index in secondary seq.
+ if ( tmpVect(i)<nbFrameMain ) temporalCorrespondances.push_back(tmpVect(i));
+ else { signalOK=false; break; } //pointing outside the secondary sequence...
+ }
+ }
+ }
+ else {signalOK=false;}
+ if (!signalOK) {//else, send a message to signal the failure...
+ QString error = "The provided temporal correspondances is invalid - check tooltip.\n";
+ error += "Ignoring file: " + fileName;
+ QMessageBox::information(this,tr("Problem adding temporal correspondances!"),error);
+ return;
+ }
+ else {
+ //for convenience, associate this sequence to both the current slicer manager, and to the linked one
+ mSlicerManagers[index]->SetFusionSequenceCorrespondances(temporalCorrespondances);
+ mSlicerManagers[ mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager() ]->SetFusionSequenceCorrespondances(temporalCorrespondances);
+ overlayPanel->enableFusionSequenceTemporalSync();
+ }
+
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+//when this function is called index is the slicer manager index corresponding to the main sequence (CT)
+//the files behind fileNames points to the data for the secondary sequence
+void vvMainWindow::AddFusionSequence(int index, std::vector<std::string> fileNames, vvImageReader::LoadedImageType type)
+{
+ QString file(fileNames[0].c_str());
+ if (QFile::exists(file))
+ {
+ mInputPathName = itksys::SystemTools::GetFilenamePath(file.toStdString()).c_str();
+ itk::ImageIOBase::Pointer reader = itk::ImageIOFactory::CreateImageIO(
+ file.toStdString().c_str(), itk::ImageIOFactory::ReadMode);
+ std::sort (fileNames.begin(), fileNames.end());//make sure the files are sorted.
+ reader->SetFileName(fileNames[0].c_str());
+ reader->ReadImageInformation();
+ std::string component = reader->GetComponentTypeAsString(reader->GetComponentType());
+ int dimension = reader->GetNumberOfDimensions();
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ vvProgressDialog progress("Opening " + file.toStdString());
+ qApp->processEvents();
+
+ std::string filename = itksys::SystemTools::GetFilenameWithoutExtension(file.toStdString()).c_str();
+
+ if (mSlicerManagers[index]->SetFusionSequence(fileNames,dimension, component,type)) {
+ //create an item in the tree with good settings
+ QTreeWidgetItem *item = new QTreeWidgetItem();
+ item->setData(0,Qt::UserRole,file.toStdString().c_str());
+ item->setData(1,Qt::UserRole,tr("fusionSequence"));
+
+ QFileInfo fileinfo(file); //Do not show the path
+ item->setData(COLUMN_IMAGE_NAME,Qt::DisplayRole,fileinfo.fileName());
+ item->setToolTip(COLUMN_IMAGE_NAME, mSlicerManagers[index]->GetListOfAbsoluteFilePathInOneString("fusionSequence").c_str());
+ qApp->processEvents();
+ for (int j = 1; j <= 4; j++) {
+ item->setData(j,Qt::CheckStateRole,DataTree->topLevelItem(index)->data(j,Qt::CheckStateRole));
+ }
+
+ //Create the buttons for reload and close
+ qApp->processEvents();
+ QTreePushButton* cButton = new QTreePushButton;
+ cButton->setItem(item);
+ cButton->setColumn(COLUMN_CLOSE_IMAGE);
+ cButton->setToolTip(tr("close image"));
+ cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
+ connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+
+ QTreePushButton* rButton = new QTreePushButton;
+ rButton->setItem(item);
+ rButton->setColumn(COLUMN_RELOAD_IMAGE);
+ rButton->setToolTip(tr("reload image"));
+ rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
+ connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+
+ DataTree->topLevelItem(index)->setExpanded(1);
+ DataTree->topLevelItem(index)->addChild(item);
+ DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
+ DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
+
+ //store the original transform matrix
+ int indexParent = GetSlicerIndexFromItem( DataTree->topLevelItem(index) );
+ mSlicerManagers[indexParent]->SetFusionSequenceMainTransformMatrix( mSlicerManagers[indexParent]->GetSlicer(0)->GetImage()->GetTransform()[0]->GetMatrix() );
+
+ //set the id of the image
+ QString id = DataTree->topLevelItem(index)->data(COLUMN_IMAGE_NAME,Qt::UserRole).toString();
+ item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
+ UpdateTree();
+ qApp->processEvents();
+
+ //ImageInfoChanged();
+
+ QApplication::restoreOverrideCursor();
+ // Update the display to update, e.g., the sliders
+ for(int i=0; i<4; i++)
+ DisplaySliders(index, i);
+
+
+ //This loads the secondary sequence (US) as an independent sequence
+ LoadImages(fileNames, type);
+ //reset the transforms to identity
+ //FIX -- and set the thickness of the US slices to a large value (necessary for visualization purposes...)
+ double sp_x, sp_y, sp_z;
+ mSlicerManagers[indexParent]->GetImage()->GetVTKImages()[0]->GetSpacing(sp_x, sp_y, sp_z);
+ sp_z = std::max(sp_x, std::max(sp_y, sp_z)) + 0.5; //
+ for (unsigned i=0 ; i<mSlicerManagers.back()->GetImage()->GetTransform().size() ; i++) {
+ sp_x = mSlicerManagers.back()->GetImage()->GetVTKImages()[i]->GetSpacing()[0];
+ sp_y = mSlicerManagers.back()->GetImage()->GetVTKImages()[i]->GetSpacing()[1];
+ mSlicerManagers.back()->GetImage()->GetVTKImages()[i]->SetSpacing( sp_x, sp_y, sp_z);
+ mSlicerManagers.back()->GetImage()->GetTransform()[i]->Identity();
+ mSlicerManagers.back()->GetImage()->GetTransform()[i]->Update();
+ }
+
+ //automatically link both images...
+ AddLink(mSlicerManagers[indexParent]->GetId().c_str(), mSlicerManagers.back()->GetId().c_str(), false);
+
+ //tie the main and secondary sequences by raising flags and informing each another of their respective SlicerManager indices
+ mSlicerManagers[indexParent]->SetFusionSequenceIndexOfLinkedManager(mSlicerManagers.size()-1);
+ mSlicerManagers[indexParent]->SetFusionSequenceInvolvmentCode(0); //main sequence
+ mSlicerManagers.back()->SetFusionSequenceIndexOfLinkedManager(indexParent);
+ mSlicerManagers.back()->SetFusionSequenceInvolvmentCode(1); //secondary sequence
+ for (unsigned i=0 ; i<4 ; i++) {
+ mSlicerManagers.back()->GetSlicer(i)->SetFusionSequenceCode(1); //flag the slicers of the secondary sequence
+ }
+
+ } else {
+ QApplication::restoreOverrideCursor();
+ QString error = "Cannot import the new image.\n";
+ error += mSlicerManagers[index]->GetLastError().c_str();
+ QMessageBox::information(this,tr("Problem reading image !"),error);
+ }
+ WindowLevelChanged();
+ ImageInfoChanged(); //this internally calls WindowLevelChanged...
+ }
+ else {
+ QMessageBox::information(this,tr("Problem reading fusion sequence !"),"File doesn't exist!");
+ return;
+ }
+
+}
+//------------------------------------------------------------------------------
+
+
+//------------------------------------------------------------------------------
+//fusionSequenceFrameIndex and fusionSequenceNbFrames are relative to the secondary sequence (US)
+void vvMainWindow::SetFusionSequenceProperty(int fusionSequenceFrameIndex, bool spatialSyncFlag, unsigned int fusionSequenceNbFrames, bool temporalSyncFlag)
+{
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+
+ if (!mSlicerManagers[index]->IsInvolvedInFusionSequence()) return;
+
+ //check if the focus moved to the linked sequence, and in this case, select the master sequence instead
+ if (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) {
+ index = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ }
+ int secondaryIndex = mSlicerManagers[index]->GetFusionSequenceIndexOfLinkedManager();
+ if (secondaryIndex==-1) return; //this should never happen
+ if ( (!mSlicerManagers[index]->IsMainSequenceOfFusionSequence()) ||
+ (!mSlicerManagers[secondaryIndex]->IsSecondarySequenceOfFusionSequence()) )
+ {return;} //this should never happen, raise an exception?
+
+ if (mSlicerManagers[index]->GetSlicer(0)->GetFusion()) {
+
+ //First, if the spatialSync button is unchecked, then reposition the parent sequence (CT) in its original coordinate frame
+ if ( (!spatialSyncFlag) && (mSlicerManagers[index]->GetFusionSequenceSpatialSyncFlag()) ) {
+ for ( unsigned i=0 ; i<mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
+ }
+
+ for (int i=0; i<mSlicerManagers[index]->GetNumberOfSlicers(); i++) {
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mSlicerManagers[index]->GetSlicer(i)->Render();
+ }
+ }
+
+ //then, update the property values in the slicer manager
+ mSlicerManagers[index]->SetFusionSequenceLength(fusionSequenceNbFrames);
+ mSlicerManagers[index]->SetFusionSequenceSpatialSyncFlag(spatialSyncFlag);
+ mSlicerManagers[index]->SetFusionSequenceTemporalSyncFlag(temporalSyncFlag);
+ mSlicerManagers[index]->SetFusionSequenceFrameIndex(fusionSequenceFrameIndex);
+
+ //select the right frame of the US sequence
+ mSlicerManagers[index]->SetFusionSequenceTSlice(fusionSequenceFrameIndex); //here, I should only update the overlayed sequence
+ mSlicerManagers[secondaryIndex]->SetTSlice(fusionSequenceFrameIndex, false); //this should update the secondary sequence (individual version)
+
+ //update the horizontal sliders of the main window
+ overlayPanel->updateFusionSequenceSliderValueFromWindow(fusionSequenceFrameIndex, false);
+
+ if (spatialSyncFlag) { //reslice the CT
+
+ if (temporalSyncFlag) { //do the temporal synchronisation
+ int mainSequenceFrameIndex=0;
+ //estimate the TSlice to set to the CT
+ unsigned nbFramesMain = mSlicerManagers[index]->GetImage()->GetTransform().size();
+ mainSequenceFrameIndex = mSlicerManagers[index]->GetFusionSequenceCorrespondances()[ nbFramesMain + fusionSequenceFrameIndex];
+ //and set it!
+ mSlicerManagers[index]->SetTSlice(mainSequenceFrameIndex, false);
+ //warning, there is a loopback, and modification of the TSlice in main sequence forces an update of the TSlice in secondary, etc...
+ }
+
+
+ //Set the transform matrix of the parent sequence (typically CT / 4DCT)
+ vtkSmartPointer<vtkMatrix4x4> tmpMat = vtkSmartPointer<vtkMatrix4x4>::New();
+ vtkMatrix4x4::Invert( mSlicerManagers[index]->GetFusionSequenceInitialTransformMatrixAtFrame(fusionSequenceFrameIndex), tmpMat );
+ for ( unsigned i=0 ; i<mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform().size() ; i++ ) {
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->SetMatrix( mSlicerManagers[index]->GetFusionSequenceMainTransformMatrix() );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->PreMultiply();
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Concatenate( tmpMat );
+ mSlicerManagers[index]->GetSlicer(0)->GetImage()->GetTransform()[i]->Update();
+ }
+
+ for (int i=0; i<mSlicerManagers[index]->GetNumberOfSlicers(); i++) {
+ mSlicerManagers[index]->GetSlicer(i)->ForceUpdateDisplayExtent();
+ mSlicerManagers[index]->GetSlicer(i)->Render();
+ }
+
+ }
+
+ }
+}
+//------------------------------------------------------------------------------
+
+
//------------------------------------------------------------------------------
void vvMainWindow::SaveAs()
{
OutputListeFormat.clear();
if (dimension == 1) {
OutputListeFormat.push_back(".mhd");
+ OutputListeFormat.push_back(".mha");
}
if (dimension == 2) {
OutputListeFormat.push_back(".bmp");
OutputListeFormat.push_back(".jpeg");
OutputListeFormat.push_back(".tif");
OutputListeFormat.push_back(".mhd");
+ OutputListeFormat.push_back(".mha");
OutputListeFormat.push_back(".hdr");
OutputListeFormat.push_back(".vox");
} else if (dimension == 3) {
OutputListeFormat.push_back(".mhd");
+ OutputListeFormat.push_back(".mha");
+ OutputListeFormat.push_back(".nii");
+ OutputListeFormat.push_back(".nrrd");
+ OutputListeFormat.push_back(".nhdr");
OutputListeFormat.push_back(".hdr");
OutputListeFormat.push_back(".vox");
} else if (dimension == 4) {
OutputListeFormat.push_back(".mhd");
+ OutputListeFormat.push_back(".mha");
+ OutputListeFormat.push_back(".nii");
+ OutputListeFormat.push_back(".nrrd");
+ OutputListeFormat.push_back(".nhdr");
}
QString Extensions = "AllFiles(*.*)";
for (int i = 0; i < OutputListeFormat.count(); i++) {
Extensions += ")";
}
QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save As"),
- mSlicerManagers[index]->GetFileName().c_str(),
- Extensions);
+ tr("Save As"),
+ mSlicerManagers[index]->GetFileName().c_str(),
+ Extensions);
if (!fileName.isEmpty()) {
std::string fileformat = itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString());
if (OutputListeFormat.contains(
- fileformat.c_str())) {
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- std::string action = "Saving";
- vvProgressDialog progress("Saving "+fileName.toStdString());
- qApp->processEvents();
- vvImageWriter::Pointer writer = vvImageWriter::New();
- writer->SetOutputFileName(fileName.toStdString());
- writer->SetInput(mSlicerManagers[index]->GetImage());
- writer->Update();
- QApplication::restoreOverrideCursor();
- if (writer->GetLastError().size()) {
- QString error = "Saving did not succeed\n";
- error += writer->GetLastError().c_str();
- QMessageBox::information(this,tr("Saving Problem"),error);
- SaveAs();
- }
+ fileformat.c_str())) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ std::string action = "Saving";
+ vvProgressDialog progress("Saving "+fileName.toStdString());
+ qApp->processEvents();
+ vvImageWriter::Pointer writer = vvImageWriter::New();
+ writer->SetOutputFileName(fileName.toStdString());
+ writer->SetInput(mSlicerManagers[index]->GetImage());
+
+ // Check on transform and prompt user
+ writer->SetSaveTransform(false);
+ bool bId = true;
+ for(int i=0; i<4; i++)
+ for(int j=0; j<4; j++) {
+ // TODO SR and BP: check on the list of transforms and not the first only
+ double elt = mSlicerManagers[index]->GetImage()->GetTransform()[0]->GetMatrix()->GetElement(i,j);
+ if(i==j && elt!=1.)
+ bId = false;
+ if(i!=j && elt!=0.)
+ bId = false;
+ }
+ if( !bId ) {
+ QString warning = "The image has an associated linear transform. Do you want to save it along?";
+ QMessageBox msgBox(QMessageBox::Warning, tr("Save transform"), warning, 0, this);
+ msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
+ msgBox.addButton(tr("No"), QMessageBox::RejectRole);
+ if (msgBox.exec() == QMessageBox::AcceptRole)
+ writer->SetSaveTransform(true);
+ }
+
+ writer->Update();
+ QApplication::restoreOverrideCursor();
+ if (writer->GetLastError().size()) {
+ QString error = "Saving did not succeed\n";
+ error += writer->GetLastError().c_str();
+ QMessageBox::information(this,tr("Saving Problem"),error);
+ SaveAs();
+ }
} else {
QString error = fileformat.c_str();
if (error.isEmpty())
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::SaveCurrentState()
+{
+ QString Extensions = "XML Files(*.xml)";
+ QString fileName = QFileDialog::getSaveFileName(this,
+ tr("Save Current Window State"),
+ "",
+ Extensions);
+
+ SaveCurrentStateAs(fileName.toStdString());
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::SaveCurrentStateAs(const std::string& stateFile)
+{
+ vvSaveState save_state;
+ save_state.Run(this, stateFile);
+}
//------------------------------------------------------------------------------
-void vvMainWindow::AddLink(QString image1,QString image2)
+void vvMainWindow::ReadSavedState()
{
+ QString Extensions = "XML Files(*.xml)";
+ QString fileName = QFileDialog::getOpenFileName(this,
+ tr("Load Window State"),
+ "",
+ Extensions);
+
+ ReadSavedStateFile(fileName.toStdString());
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::ReadSavedStateFile(const std::string& stateFile)
+{
+ vvReadState read_state;
+ read_state.Run(this, stateFile);
+}
+//------------------------------------------------------------------------------
+
+//------------------------------------------------------------------------------
+void vvMainWindow::LinkAllImages()
+{
+ linkPanel->linkAll();
+}
+
+//------------------------------------------------------------------------------
+void vvMainWindow::AddLink(QString image1,QString image2,bool fromPanel)
+{
+ if (!fromPanel) {
+ // delegate to linkPanel if call came from elsewhere...
+ linkPanel->addLinkFromIds(image1, image2);
+ return;
+ }
+
unsigned int sm1 = 0;
unsigned int sm2 = 0;
//------------------------------------------------------------------------------
void vvMainWindow::ChangeImageWithIndexOffset(vvSlicerManager *sm, int slicer, int offset)
{
+ if(mSlicerManagers.size()==1)
+ return;
+
int index = 0;
while(sm != mSlicerManagers[index])
index++;
- index = (index+offset) % mSlicerManagers.size();
+ index = (index+offset+mSlicerManagers.size()) % mSlicerManagers.size();
QTreeWidgetItem* item = GetItemFromSlicerManager(mSlicerManagers[index]);
item->setData(slicer+1,Qt::CheckStateRole,2); //change checkbox
DisplayChanged(item,slicer+1);
}
//------------------------------------------------------------------------------
-
void vvMainWindow::HorizontalSliderMoved(int value,int column, int slicer_index)
{
for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
if (DataTree->topLevelItem(i)->data(column,Qt::CheckStateRole).toInt() > 1) {
+ //i is the SlicerManager that is in charge of this slicer.
+ if (mSlicerManagers[i]->IsInvolvedInFusionSequence()) {
+ //if the slicerManager is involved in a fusionSequence as the secondary sequence, then update the slider position in the overlay panel and everything accordingly
+ if (mSlicerManagers[i]->IsSecondarySequenceOfFusionSequence()) {
+ overlayPanel->updateFusionSequenceSliderValueFromWindow(value, true);
+ }
+ else { //if this is the primary sequence that has been modified
+ if (mSlicerManagers[i]->GetFusionSequenceTemporalSyncFlag()) {
+ //WARNING: for some obscure reason, there are problems when accessing mSlicerManagers[mSlicerManagers[i]->GetFusionSequenceIndexOfLinkedManager()]->GetFusionSequenceFrameIndex();
+
+ int estimatedValue=0;
+ //estimate a corresponding time index for the secondary (US) sequence, and update it accordingly.
+ estimatedValue = mSlicerManagers[i]->GetFusionSequenceCorrespondances()[ value ];
+ //TODO: at the moment, there is a loop in TSlice modifications
+ //modifying sequence 1 causes seq 2 to update, which in turns update seq1...
+ //I disable control on seq1 at the moment.
+ //overlayPanel->updateFusionSequenceSliderValueFromWindow(estimatedValue, true);
+ }
+ }
+ }
+
for (int j = 0; j < 4; j++) {
mSlicerManagers[i]->SetTSliceInSlicer(value,j);
- //if (mSlicerManagers[i]->GetSlicer(j)->GetImageActor()->GetVisibility())
- //UpdateTSlice(j,value);
}
mSlicerManagers[i]->GetSlicer(slicer_index)->Render();
break;
{
// if (mCurrentTime == NOHorizontalSlider->value()) return;
HorizontalSliderMoved(NOHorizontalSlider->value(),COLUMN_UL_VIEW,0);
-// mCurrentTime = NOHorizontalSlider->value();
+ // mCurrentTime = NOHorizontalSlider->value();
}
//------------------------------------------------------------------------------
{
// if (mCurrentTime == NEHorizontalSlider->value()) return;
HorizontalSliderMoved(NEHorizontalSlider->value(),COLUMN_UR_VIEW,1);
-// mCurrentTime = NEHorizontalSlider->value();
+ // mCurrentTime = NEHorizontalSlider->value();
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateSlice(int slicer, int slice)
{
// DD("vvMainWindow::UpdateSlice");
-// DD(slicer);
-// DD(slice);
+ // DD(slicer);
+ // DD(slice);
if (slicer == 0) {
// if (slice != NOVerticalSlider->value())
NOVerticalSlider->setValue(slice);
//------------------------------------------------------------------------------
-void vvMainWindow::UpdateTSlice(int slicer, int slice)
+void vvMainWindow::UpdateTSlice(int slicer, int slice, int code)
{
+ //FusionSequence: the slider value should be updated for slicers which show the same sequence as requested
+ bool doUpdate=false;
+ if (code==-1) doUpdate=true;
+ else {
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ if (DataTree->topLevelItem(i)->data(slicer+1,Qt::CheckStateRole).toInt() > 1) {
+ //i is the active SlicerManager
+ if (mSlicerManagers[i]->GetFusionSequenceInvolvmentCode()==code) doUpdate=true;
+ break;
+ }
+ }
+ }
+ if (!doUpdate) return;
+
switch (slicer) {
case 0:
+ if (NOHorizontalSlider->value()==slice) return;
NOHorizontalSlider->setValue(slice);
break;
case 1:
+ if (NEHorizontalSlider->value()==slice) return;
NEHorizontalSlider->setValue(slice);
break;
case 2:
+ if (SOHorizontalSlider->value()==slice) return;
SOHorizontalSlider->setValue(slice);
break;
case 3:
+ if (SEHorizontalSlider->value()==slice) return;
SEHorizontalSlider->setValue(slice);
break;
}
//------------------------------------------------------------------------------
void vvMainWindow::UpdateSliceRange(int slicer, int min, int max, int tmin, int tmax)
{
- int position = int((min+max)/2);
- int tPosition = int((tmin+tmax)/2);
+ //int position = int((min+max)/2);
+ int position = mSlicerManagers[mCurrentPickedImageIndex]->GetSlicer(slicer)->GetSlice();
if (slicer == 0) {
- NOVerticalSlider->setValue(position);
NOVerticalSlider->setRange(min,max);
NOHorizontalSlider->setRange(tmin,tmax);
- NOHorizontalSlider->setValue(tPosition);
+ NOVerticalSlider->setValue(position);
} else if (slicer == 1) {
- NEVerticalSlider->setValue(position);
NEVerticalSlider->setRange(min,max);
NEHorizontalSlider->setRange(tmin,tmax);
- NEHorizontalSlider->setValue(tPosition);
+ NEVerticalSlider->setValue(position);
} else if (slicer == 2) {
- SOVerticalSlider->setValue(position);
SOVerticalSlider->setRange(min,max);
SOHorizontalSlider->setRange(tmin,tmax);
- SOHorizontalSlider->setValue(tPosition);
+ SOVerticalSlider->setValue(position);
} else if (slicer == 3) {
- SEVerticalSlider->setValue(position);
SEVerticalSlider->setRange(min,max);
SEHorizontalSlider->setRange(tmin,tmax);
- SEHorizontalSlider->setValue(tPosition);
+ SEVerticalSlider->setValue(position);
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::SaveScreenshotAllSlices()
+{
+ QVTKWidget *widget = NOViewWidget;
+
+ int index = 0;// GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ vvSlicerManager * SM = mSlicerManagers[index];
+ vvImage * image = SM->GetImage();
+ vvSlicer * slicer = SM->GetSlicer(0);
+ int orientation = slicer->GetOrientation();
+ int nbSlices = image->GetSize()[orientation];
+ vtkSmartPointer<vtkRenderWindow> renderWindow = widget->GetRenderWindow();
+
+ // Select filename base
+ QString filename = QFileDialog::getSaveFileName(this,
+ tr("Save As (filename will be completed by slice number)"),
+ itksys::SystemTools::GetFilenamePath(mSlicerManagers[index]->GetFileName()).c_str(),
+ "Images( *.png);;Images( *.jpg)");
+
+ // Loop on slices
+ for(int i=0; i<nbSlices; i++) {
+ // Change the slice
+ slicer->SetSlice(i); // -> change the slice of the current slicer
+ SM->UpdateSlice(0); // --> this one emit UpdateSlice
+ QCoreApplication::flush(); // -> needed to force display of contours
+
+ // Screenshot
+ vtkSmartPointer<vtkWindowToImageFilter> windowToImageFilter = vtkSmartPointer<vtkWindowToImageFilter>::New();
+ windowToImageFilter->SetInput(renderWindow);
+ windowToImageFilter->SetMagnification(1);
+ windowToImageFilter->SetInputBufferTypeToRGBA(); //also record the alpha (transparency) channel
+ windowToImageFilter->Update();
+
+ vtkSmartPointer<vtkPNGWriter> writer = vtkSmartPointer<vtkPNGWriter>::New();
+ std::string fn = itksys::SystemTools::GetFilenameWithoutLastExtension(filename.toStdString());
+ std::string num = clitk::toString(i);
+ if (i<10) num = "0"+num;
+ if (i<100) num = "0"+num;
+ if (i<1000) num = "0"+num;
+
+ fn = itksys::SystemTools::GetFilenamePath(filename.toStdString()) + "/"+ fn
+ + "_" + num + itksys::SystemTools::GetFilenameLastExtension(filename.toStdString());
+ writer->SetFileName(fn.c_str());
+ writer->SetInput(windowToImageFilter->GetOutput());
+ writer->Write();
+ }
+}
+//------------------------------------------------------------------------------
+
+
//------------------------------------------------------------------------------
void vvMainWindow::SaveScreenshot(QVTKWidget *widget)
{
Extensions += "Images( *.bmp);;";
Extensions += "Images( *.tif);;";
Extensions += "Images( *.ppm)";
-#ifdef VTK_USE_FFMPEG_ENCODER
- Extensions += "Images( *.avi)";
+#if defined(VTK_USE_FFMPEG_ENCODER) || defined(VTK_USE_VIDEO_FOR_WINDOWS)
+ Extensions += ";;Video( *.avi)";
#endif
#ifdef VTK_USE_MPEG2_ENCODER
- Extensions += "Images( *.mpg)";
+ Extensions += ";;Video( *.mpg)";
+#endif
+#ifdef CLITK_EXPERIMENTAL
+ Extensions += ";;Video( *.gif)";
#endif
int smIndex=GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
QString fileName = QFileDialog::getSaveFileName(this,
- tr("Save As"),
- itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
- Extensions);
+ tr("Save As"),
+ itksys::SystemTools::GetFilenamePath(mSlicerManagers[smIndex]->GetFileName()).c_str(),
+ Extensions);
if (!fileName.isEmpty()) {
vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
w2i->Update();
vtkImageData *image = w2i->GetOutput();
- const char *ext = fileName.toStdString().c_str() + strlen(fileName.toStdString().c_str()) - 4;
- if (!strcmp(ext, ".bmp")) {
- vtkBMPWriter *bmp = vtkBMPWriter::New();
- bmp->SetInput(image);
- bmp->SetFileName(fileName.toStdString().c_str());
- bmp->Write();
- bmp->Delete();
- } else if (!strcmp(ext, ".tif")) {
- vtkTIFFWriter *tif = vtkTIFFWriter::New();
- tif->SetInput(image);
- tif->SetFileName(fileName.toStdString().c_str());
- tif->Write();
- tif->Delete();
- } else if (!strcmp(ext, ".ppm")) {
- vtkPNMWriter *pnm = vtkPNMWriter::New();
- pnm->SetInput(image);
- pnm->SetFileName(fileName.toStdString().c_str());
- pnm->Write();
- pnm->Delete();
- } else if (!strcmp(ext, ".png")) {
- vtkPNGWriter *png = vtkPNGWriter::New();
- png->SetInput(image);
- png->SetFileName(fileName.toStdString().c_str());
- png->Write();
- png->Delete();
- } else if (!strcmp(ext, ".jpg")) {
- vtkJPEGWriter *jpg = vtkJPEGWriter::New();
- jpg->SetInput(image);
- jpg->SetFileName(fileName.toStdString().c_str());
- jpg->Write();
- jpg->Delete();
+ std::string ext(itksys::SystemTools::GetFilenameLastExtension(fileName.toStdString()));
+
+ // Image
+ vtkImageWriter *imgwriter = NULL;
+ if (ext==".bmp")
+ imgwriter = vtkBMPWriter::New();
+ else if (ext==".tif")
+ imgwriter = vtkTIFFWriter::New();
+ else if (ext==".ppm")
+ imgwriter = vtkPNMWriter::New();
+ else if (ext==".png")
+ imgwriter = vtkPNGWriter::New();
+ else if (ext==".jpg")
+ imgwriter = vtkJPEGWriter::New();
+
+ // Snapshot image if not null
+ if(imgwriter!=NULL) {
+ imgwriter->SetInput(image);
+ imgwriter->SetFileName(fileName.toStdString().c_str());
+ imgwriter->Write();
+ return;
+ }
+
+ // Video
+ vtkGenericMovieWriter *vidwriter = NULL;
+#if CLITK_EXPERIMENTAL == 1
+ if (ext==".gif") {
+ vvAnimatedGIFWriter *gif = vvAnimatedGIFWriter::New();
+ vidwriter = gif;
+
+ // FPS
+ bool ok;
+ int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
+ tr("FPS:"), 5, 0, 1000, 1, &ok);
+ if(ok)
+ gif->SetRate(fps);
+
+ // Loops
+ int loops = QInputDialog::getInteger(this, tr("Loops"),
+ tr("Number of loops (0 means infinite):"), 0, 0, 1000000000, 1, &ok);
+ if(ok)
+ gif->SetLoops(loops);
+
+ // Dithering
+ QString msg = "Would you like to activate dithering?";
+ QMessageBox msgBox(QMessageBox::Question, tr("Dithering"),msg, 0, this);
+ msgBox.addButton(tr("Yes"), QMessageBox::AcceptRole);
+ msgBox.addButton(tr("No"), QMessageBox::RejectRole);
+ gif->SetDither(msgBox.exec() == QMessageBox::AcceptRole);
+ }
+#endif
+#ifdef VTK_USE_VIDEO_FOR_WINDOWS
+ if (ext==".avi") {
+ vtkAVIWriter *mpg = vtkAVIWriter::New();
+ vidwriter = mpg;
+ mpg->SetQuality(2);
+ bool ok;
+ int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
+ tr("FPS:"), 5, 0, 1024, 1, &ok);
+ if(!ok)
+ fps = 5;
+ mpg->SetRate(fps);
+ }
+#endif
#ifdef VTK_USE_FFMPEG_ENCODER
- } else if (!strcmp(ext, ".avi")) {
+ if (ext==".avi") {
vtkFFMPEGWriter *mpg = vtkFFMPEGWriter::New();
- mpg->SetInput(image);
- mpg->SetFileName(fileName.toStdString().c_str());
+ vidwriter = mpg;
mpg->SetQuality(2);
- mpg->SetRate(5);
- mpg->Start();
-
- vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
- int nSlice = vvImg->GetVTKImages().size();
- for(int i=0; i<nSlice; i++) {
- mSlicerManagers[smIndex]->SetNextTSlice(0);
- vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
- w2i->SetInput(widget->GetRenderWindow());
- w2i->Update();
- mpg->SetInput(w2i->GetOutput());
- mpg->Write();
- }
- mpg->End();
- mpg->Delete();
+ bool ok;
+ int fps = QInputDialog::getInteger(this, tr("Number of frames per second"),
+ tr("FPS:"), 5, 0, 1024, 1, &ok);
+ if(!ok)
+ fps = 5;
+ mpg->SetRate(fps);
+ mpg->SetBitRateTolerance(int(ceil(12.0*1024*1024/fps)));
+ }
#endif
#ifdef VTK_USE_MPEG2_ENCODER
- } else if (!strcmp(ext, ".mpg")) {
+ if (ext==".mpg") {
vtkMPEG2Writer *mpg = vtkMPEG2Writer::New();
- mpg->SetInput(image);
- mpg->SetFileName(fileName.toStdString().c_str());
- mpg->Start();
+ vidwriter = mpg;
+ }
+#endif
- vvImage * vvImg = mSlicerManagers[smIndex]->GetImage();
- int nSlice = vvImg->GetVTKImages().size();
- for(int i=0; i<nSlice; i++) {
+ // Take video if not null
+ if(vidwriter!=NULL){
+ vidwriter->SetInput(image);
+ vidwriter->SetFileName(fileName.toStdString().c_str());
+ vidwriter->Start();
+ int nSlice = mSlicerManagers[smIndex]->GetSlicer(0)->GetTMax();
+ for(int i=0; i<=nSlice; i++) {
mSlicerManagers[smIndex]->SetNextTSlice(0);
vtkSmartPointer<vtkWindowToImageFilter> w2i = vtkSmartPointer<vtkWindowToImageFilter>::New();
w2i->SetInput(widget->GetRenderWindow());
w2i->Update();
- mpg->SetInput(w2i->GetOutput());
- mpg->Write();
+ vidwriter->SetInput(w2i->GetOutput());
+ vidwriter->Write();
}
- mpg->End();
- mpg->Delete();
-#endif
- } else {
- QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
+ vidwriter->End();
+ vidwriter->Delete();
+ return;
}
+
+ QMessageBox::information(this,tr("Problem saving screenshot !"),tr("Cannot save image.\nPlease set a file extension !!!"));
}
}
//------------------------------------------------------------------------------
}
//------------------------------------------------------------------------------
+//------------------------------------------------------------------------------
+void vvMainWindow::GoToLandmark()
+{
+ int index = GetSlicerIndexFromItem(DataTree->selectedItems()[0]);
+ for (int column = 1; column < 5; column++) {
+ if (DataTree->selectedItems()[0]->data(column,Qt::CheckStateRole).toInt() > 1) {
+ double* cursorPos = landmarksPanel->GetSelectedPoint();
+ mSlicerManagers[index]->GetSlicer(column-1)->SetCurrentPosition(
+ cursorPos[0],cursorPos[1],cursorPos[2],cursorPos[3]);
+ mSlicerManagers[index]->UpdateViews(1,column-1);
+ mSlicerManagers[index]->UpdateLinked(column-1);
+ break;
+ }
+ }
+}
+//------------------------------------------------------------------------------
+
//------------------------------------------------------------------------------
void vvMainWindow::PlayPause()
{
int image_number=DataTree->topLevelItemCount();
bool has_temporal;
for (int i=0; i<image_number; i++)
- if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1) {
+ if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0) {
has_temporal=true;
break;
}
- if (has_temporal) {
- playMode = 1;
- playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
- QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
- }
+ if (has_temporal) {
+ playMode = 1;
+ playButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/player_pause.png")));
+ QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
+ }
}
}
//------------------------------------------------------------------------------
///Only play one slicer per SM, and only if the SM is being displayed
for (int i=0; i<image_number; i++)
for (int j=0; j<4; j++)
- if (mSlicerManagers[i]->GetImage()->GetVTKImages().size() > 1 &&
- DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
- mSlicerManagers[i]->SetNextTSlice(j);
- break;
+ if (mSlicerManagers[i]->GetSlicer(0)->GetTMax() > 0 &&
+ DataTree->topLevelItem(i)->data(j+1,Qt::CheckStateRole).toInt() > 0) {
+ mSlicerManagers[i]->SetNextTSlice(j);
+ break;
}
- QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
+ QTimer::singleShot(1000/mFrameRate, this, SLOT(PlayNext()));
}
}
//------------------------------------------------------------------------------
//------------------------------------------------------------------------------
void vvMainWindow::UpdateRenderWindows()
{
+ for (unsigned int i = 0; i < mSlicerManagers.size(); i++) {
+ mSlicerManagers[i]->GetSlicer(0)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(1)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(2)->UpdateLandmarks();
+ mSlicerManagers[i]->GetSlicer(3)->UpdateLandmarks();
+ }
if (NOViewWidget->GetRenderWindow()) NOViewWidget->GetRenderWindow()->Render();
if (NEViewWidget->GetRenderWindow()) NEViewWidget->GetRenderWindow()->Render();
if (SOViewWidget->GetRenderWindow()) SOViewWidget->GetRenderWindow()->Render();
for(unsigned int l=0; l<mSlicerManagers.size(); l++) {
vvSlicerManager * v = mSlicerManagers[l];
if (v->GetBaseFileName() ==
- vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
- number = std::max(number, v->GetBaseFileNameNumber()+1);
+ vtksys::SystemTools::GetFilenameName(vtksys::SystemTools::GetFilenameWithoutLastExtension(filename))) {
+ number = std::max(number, v->GetBaseFileNameNumber()+1);
}
}
return number;
cButton->setColumn(COLUMN_CLOSE_IMAGE);
cButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/exit.png")));
connect(cButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(CloseImage(QTreeWidgetItem*, int)));
+ this,SLOT(CloseImage(QTreeWidgetItem*, int)));
QTreePushButton* rButton = new QTreePushButton;
rButton->setItem(item);
rButton->setIcon(QIcon(QString::fromUtf8(":/common/icons/rotateright.png")));
rButton->setEnabled(0);
connect(rButton,SIGNAL(clickedInto(QTreeWidgetItem*, int)),
- this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
+ this,SLOT(ReloadImage(QTreeWidgetItem*, int)));
DataTree->addTopLevelItem(item);
DataTree->setItemWidget(item, COLUMN_CLOSE_IMAGE, cButton);
DataTree->setItemWidget(item, COLUMN_RELOAD_IMAGE, rButton);
//set the id of the image
- QString id = slicer_manager->GetFileName().c_str() + QString::number(mSlicerManagers.size()-1);
+ QString id = QDir::current().absoluteFilePath(slicer_manager->GetFileName().c_str()) + QString::number(mSlicerManagers.size()-1);
item->setData(COLUMN_IMAGE_NAME,Qt::UserRole,id.toStdString().c_str());
mSlicerManagers.back()->SetId(id.toStdString());
linkPanel->addImage(slicer_manager->GetFileName().c_str()// filename
- , id.toStdString());
+ , id.toStdString());
connect(mSlicerManagers.back(), SIGNAL(currentImageChanged(std::string)),
- this, SLOT(CurrentImageChanged(std::string)));
+ this, SLOT(CurrentImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(currentPickedImageChanged(std::string)),
- this, SLOT(CurrentPickedImageChanged(std::string)));
+ this, SLOT(CurrentPickedImageChanged(std::string)));
connect(mSlicerManagers.back(), SIGNAL(UpdatePosition(int, double, double, double, double, double, double, double)),
- this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
+ this, SLOT(MousePositionChanged(int,double, double, double, double, double, double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateVector(int, double, double, double, double)),
- this, SLOT(VectorChanged(int,double,double,double, double)));
+ this, SLOT(VectorChanged(int,double,double,double, double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateOverlay(int, double, double)),
- this, SLOT(OverlayChanged(int,double,double)));
+ this, SLOT(OverlayChanged(int,double,double)));
connect(mSlicerManagers.back(), SIGNAL(UpdateFusion(int, double)),
- this, SLOT(FusionChanged(int,double)));
- connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged(double, double,int, int)),
- this,SLOT(WindowLevelChanged(double, double, int, int)));
+ this, SLOT(FusionChanged(int,double)));
+ //connect(mSlicerManagers.back(), SIGNAL(UpdateFusionSequence(int, bool, unsigned int)),
+ // this, SLOT(FusionSequenceChanged(int, bool, unsigned int)));
+ connect(mSlicerManagers.back(), SIGNAL(WindowLevelChanged()),
+ this,SLOT(WindowLevelChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSlice(int,int)),
- this,SLOT(UpdateSlice(int,int)));
- connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int)),
- this,SLOT(UpdateTSlice(int, int)));
+ this,SLOT(UpdateSlice(int,int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(UpdateTSlice(int, int, int)));
+ connect(mSlicerManagers.back(), SIGNAL(UpdateTSlice(int, int, int)),
+ this,SLOT(ImageInfoChanged()));
connect(mSlicerManagers.back(), SIGNAL(UpdateSliceRange(int,int,int,int,int)),
- this,SLOT(UpdateSliceRange(int,int,int,int,int)));
+ this,SLOT(UpdateSliceRange(int,int,int,int,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkManager(std::string,int,double,double,double,int)),
- this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
+ this,SLOT(UpdateLinkManager(std::string,int,double,double,double,int)));
connect(mSlicerManagers.back(), SIGNAL(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)),
- this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
+ this,SLOT(UpdateLinkedNavigation(std::string,vvSlicerManager*,vvSlicer*)));
connect(mSlicerManagers.back(), SIGNAL(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)),
- this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
+ this,SLOT(ChangeImageWithIndexOffset(vvSlicerManager*,int,int)));
connect(mSlicerManagers.back(), SIGNAL(LandmarkAdded()),landmarksPanel,SLOT(AddPoint()));
+
+
UpdateTree();
qApp->processEvents();
InitSlicers();