+ bool ok=true;
+ FILE *ffIn = fopen(inputfilename.c_str(),"r");
+ if (ffIn!=NULL)
+ {
+ FILE *ffOut = fopen(newFileName.c_str(),"w");
+
+ while(!feof(ffIn))
+ {
+ strcpy(mystring,"\n");
+ fgets(mystring,250,ffIn);
+ if (strncmp("NDims",mystring,5)==0)
+ {
+ if (width==1)
+ {
+ strcpy(mystring,"NDims = 2\n");
+ } else {
+ strcpy(mystring,"NDims = 3\n");
+ }
+ }
+ if (strncmp("DimSize",mystring,6)==0)
+ {
+ sscanf(mystring,"%s %s %d %d %d",strTmp, strTmp, &sx, &sy,&sz);
+
+ if (width==1)
+ {
+ sprintf(mystring,"DimSize = %d %d\n",sx,sy);
+ } else {
+ sprintf(mystring,"DimSize = %d %d %d\n",sx,sy,width);
+ }
+
+ newHeaderSize = (long long int)sx*(long long int)sy*(long long int)slice;
+ if (bbGetInputSlice()>=sz) {ok=false;}
+ } // if
+ if (strncmp("ElementType = MET_CHAR",mystring,22)==0) { dataSize=sizeof(char); }
+ if (strncmp("ElementType = VTK_CHAR",mystring,22)==0) { dataSize=sizeof(char); }
+ if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) { dataSize=sizeof(unsigned char); }
+ if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0) { dataSize=sizeof(unsigned char); }
+ if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { dataSize=sizeof(unsigned short); }
+ if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { dataSize=sizeof(unsigned short); }
+ if (strncmp("ElementType = MET_SHORT",mystring,23)==0) { dataSize=sizeof(short); }
+ if (strncmp("ElementType = VTK_SHORT",mystring,23)==0) { dataSize=sizeof(short); }
+ if (strncmp("ElementType = MET_UINT",mystring,22)==0) { dataSize=sizeof(unsigned int); }
+ if (strncmp("ElementType = VTK_UNSIGNED_INT",mystring,30)==0) { dataSize=sizeof(unsigned int); }
+ if (strncmp("ElementType = MET_INT",mystring,21)==0) { dataSize=sizeof(int); }
+ if (strncmp("ElementType = VTK_INT",mystring,21)==0) { dataSize=sizeof(int); }
+ if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) { dataSize=sizeof(float); }
+ if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) { dataSize=sizeof(float); }
+ if (strncmp("ElementType = MET_LONG",mystring,22)==0) { dataSize=sizeof(long); }
+ if (strncmp("ElementType = VTK_LONG",mystring,22)==0) { dataSize=sizeof(long); }
+ if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0) { dataSize=sizeof(double); }
+ if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0) { dataSize=sizeof(double); }
+ newHeaderSize=newHeaderSize*dataSize;
+
+ if (strncmp("Offset",mystring,6)==0) {strcpy(mystring,"Offset = 0 0 0\n");}
+ if (strncmp("HeaderSize",mystring,10)==0) {strcpy(mystring,"");}
+ if (strncmp("ElementDataFile",mystring,15)==0)
+ {
+ fprintf(ffOut,"HeaderSize = %lld\n\n", newHeaderSize );
+ } // if
+ fprintf(ffOut,mystring);
+ } // while
+ fclose(ffIn);
+ fclose(ffOut);
+
+ if (ok==true)
+ {
+ vtkMetaImageReader * reader = vtkMetaImageReader::New();
+ reader->SetFileName( newFileName.c_str() );
+ reader->Update();
+ newImage = reader->GetOutput();
+ } // if ok
+ } else {
+ ok=false;
+ printf("EED ERROR: Problem openin:%s\n", inputfilename.c_str() );
+ }
+
+ if (ok==false)
+ {
+ newImage=CreateDefaultImage();
+ } // if ok
+
+ bbSetOutputOut( newImage );
+}
+
+
+
+
+
+void ReadMHDPlane::Read64lseek()
+{
+ int slice;
+ int width;
+
+ width = bbGetInputWidth();
+ if (width<=0 ) { width=1; }
+
+ slice = bbGetInputSlice();
+ if (slice<0 ) { slice=0; }
+
+ int dimX=-1,dimY=-1,dimZ=-1;
+ int dim=-1;
+ std::string formattype("VOID");
+ std::string elementdatafile("VOID");
+ float spcX=-1,spcY=-1,spcZ=-1;
+ float ox=-1,oy=-1,oz=-1;
+ long int headersize=0;
+
+ vtkImageData *newImage=NULL;
+ int imageType;
+
+ char mystring[250];
+ char strTmp[30];
+ char strTmp2[30];
+ FILE *ffIn = fopen(bbGetInputFileName().c_str(),"r");
+ long long dataSize;
+
+ if (ffIn!=NULL)
+ {
+ newImage = vtkImageData::New();
+
+ while(!feof(ffIn))
+ {
+ strcpy(mystring,"\n");
+ fgets(mystring,250,ffIn);
+ if (strncmp("NDims",mystring,5)==0) { sscanf(mystring,"%s %s %d" ,strTmp, strTmp, &dim); }
+ if (strncmp("DimSize",mystring,6)==0) { sscanf(mystring,"%s %s %d %d %d" ,strTmp, strTmp, &dimX, &dimY,&dimZ); }
+ if (strncmp("ElementType",mystring,11)==0) { sscanf(mystring,"%s %s %s" ,strTmp, strTmp, strTmp2); formattype=strTmp2; }
+ if (strncmp("ElementSpacing",mystring,14)==0) { sscanf(mystring,"%s %s %f %f %f" ,strTmp, strTmp, &spcX,&spcY,&spcZ); }
+ if (strncmp("ElementSize",mystring,11)==0) { sscanf(mystring,"%s %s %f %f %f" ,strTmp, strTmp, &spcX,&spcY,&spcZ); }
+ if (strncmp("Offset",mystring,6)==0) { sscanf(mystring,"%s %s %f %f %f" ,strTmp, strTmp, &ox, &oy, &oz); }
+ if (strncmp("HeaderSize",mystring,10)==0) { sscanf(mystring,"%s %s %ld" ,strTmp, strTmp, &headersize); }
+ if (strncmp("ElementDataFile",mystring,15)==0) { sscanf(mystring,"%s %s %s" ,strTmp, strTmp, strTmp2); elementdatafile=strTmp2; }
+
+
+
+ if (strncmp("ElementType = MET_CHAR",mystring,22)==0) { imageType =VTK_CHAR; dataSize=sizeof(char); }
+ if (strncmp("ElementType = VTK_CHAR",mystring,22)==0) { imageType =VTK_CHAR; dataSize=sizeof(char); }
+ if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) { imageType =VTK_UNSIGNED_CHAR; dataSize=sizeof(unsigned char); }
+ if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0) { imageType =VTK_UNSIGNED_CHAR; dataSize=sizeof(unsigned char); }
+ if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { imageType =VTK_UNSIGNED_SHORT; dataSize=sizeof(unsigned short);}
+ if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { imageType =VTK_UNSIGNED_SHORT; dataSize=sizeof(unsigned short);}
+ if (strncmp("ElementType = MET_SHORT",mystring,23)==0) { imageType =VTK_SHORT; dataSize=sizeof(short); }
+ if (strncmp("ElementType = VTK_SHORT",mystring,23)==0) { imageType =VTK_SHORT; dataSize=sizeof(short); }
+ if (strncmp("ElementType = MET_UINT",mystring,22)==0) { imageType =VTK_UNSIGNED_INT; dataSize=sizeof(unsigned int); }
+ if (strncmp("ElementType = VTK_UNSIGNED_INT",mystring,30)==0) { imageType =VTK_UNSIGNED_INT; dataSize=sizeof(unsigned int); }
+ if (strncmp("ElementType = MET_INT",mystring,21)==0) { imageType =VTK_INT; dataSize=sizeof(int); }
+ if (strncmp("ElementType = VTK_INT",mystring,21)==0) { imageType =VTK_INT; dataSize=sizeof(int); }
+ if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) { imageType =VTK_FLOAT; dataSize=sizeof(float); }
+ if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) { imageType =VTK_FLOAT; dataSize=sizeof(float); }
+ if (strncmp("ElementType = MET_LONG",mystring,22)==0) { imageType =VTK_LONG; dataSize=sizeof(long); }
+ if (strncmp("ElementType = VTK_LONG",mystring,22)==0) { imageType =VTK_LONG; dataSize=sizeof(long); }
+ if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0) { imageType =VTK_DOUBLE; dataSize=sizeof(double); }
+ if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0) { imageType =VTK_DOUBLE; dataSize=sizeof(double); }
+
+ } // while
+ fclose(ffIn);
+
+ newImage->Initialize();
+
+
+ int fd;
+ long long ret;
+ std::size_t found;
+ std::string filename;
+ found = bbGetInputFileName().find_last_of("/\\");
+ filename = bbGetInputFileName().substr(0,found+1) + elementdatafile ;
+ long long pos;
+
+ long long lsize = dimX*dimY*width *dataSize;
+
+
+#if defined(_WIN32)
+ _sopen_s( &fd, filename.c_str(), _O_RDONLY, _SH_DENYNO, 0 );
+#else
+ fd = open ( filename.c_str() , O_RDONLY|O_LARGEFILE );
+#endif // defined(_WIN32)
+
+
+ if (fd < 0)
+ {
+ printf("EED ReadMHDPlane::Read64lseek WARNNING! raw file not exist\n");
+ fprintf(stderr, "%s\n", strerror(errno));
+ newImage=CreateDefaultImage();
+// exit(1);
+ }
+
+
+ if ((bbGetInputDirectionPlane()=="XY") && (fd>=0))
+ {
+ newImage->SetSpacing( spcX,spcY,spcZ );
+ newImage->SetDimensions( dimX,dimY,width );
+ newImage->SetExtent(0, dimX-1,0,dimY-1,0,width-1 );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ newImage->SetWholeExtent(0, dimX-1,0,dimY-1,0,width-1 );
+ newImage->SetNumberOfScalarComponents(1);
+ newImage->SetScalarType(imageType);
+ newImage->AllocateScalars();
+ newImage->Update();
+#else
+ newImage->AllocateScalars( imageType,1 );
+#endif
+
+
+ pos = dimX*dimY*(long long)slice*dataSize;
+#if defined(_WIN32)
+ if (_lseeki64( fd, pos, SEEK_SET ) < 0)
+#else
+ if (lseek64(fd, pos, SEEK_SET) < 0)
+#endif // defined(_WIN32)
+ {
+ printf("EED ReadMHDPlane::Read64lseek \n");
+ fprintf(stderr, "Failed seeking to %lld, %s\n", pos, strerror(errno));
+ exit(1);
+ }
+
+ if ((ret = read(fd, newImage->GetScalarPointer() , lsize)) < 0)
+ {
+ fprintf(stderr, "Failed reading: %s\n", strerror(errno));
+ exit(1);
+ }
+ } // if PLANE XY
+
+ if ((bbGetInputDirectionPlane()=="XZ") && (fd>=0))
+ {
+ newImage->SetSpacing( spcX,spcZ,spcY );
+ newImage->SetDimensions( dimX,dimZ,width );
+ newImage->SetExtent(0, dimX-1,0,dimZ-1,0,width-1 );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ newImage->SetWholeExtent(0, dimX-1,0,dimZ-1,0,width-1 );
+ newImage->SetNumberOfScalarComponents(1);
+ newImage->SetScalarType(imageType);
+ newImage->AllocateScalars();
+ newImage->Update();
+#else
+ newImage->AllocateScalars( imageType, 1);
+#endif
+
+ int iWidth;
+ for (iWidth=0;iWidth<width;iWidth++)
+ {
+ copy_XZ_plane(fd,newImage,slice+iWidth,iWidth,dimX,dimY,dimZ,dataSize);
+ }
+ } // if PLANE XZ
+
+ if ((bbGetInputDirectionPlane()=="YZ") && (fd>=0))
+ {
+ newImage->SetSpacing( spcY,spcZ,spcX );
+ newImage->SetDimensions( dimY,dimZ,width );
+ newImage->SetExtent(0, dimY-1,0,dimZ-1,0,width-1 );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ newImage->SetWholeExtent(0, dimY-1,0,dimZ-1,0,width-1 );
+ newImage->SetNumberOfScalarComponents(1);
+ newImage->SetScalarType(imageType);
+ newImage->AllocateScalars();
+ newImage->Update();
+#else
+ newImage->AllocateScalars( imageType ,1 );
+#endif
+
+ int iWidth;
+ for (iWidth=0;iWidth<width;iWidth++)
+ {
+ copy_YZ_plane(fd,newImage,slice+iWidth,iWidth,dimX,dimY,dimZ,dataSize);
+ }
+
+ } // if PLANE YZ
+#if defined(_WIN32)
+ _close (fd);
+#else
+ close (fd);
+#endif // defined(_WIN32)
+ } else {
+ newImage=CreateDefaultImage();
+ } // if ffIn
+
+ bbSetOutputOut( newImage );
+}
+
+
+void ReadMHDPlane::copy_YZ_plane(int fd,vtkImageData *newImage,int slice,int iWidth,int dimX,int dimY,int dimZ,int dataSize)
+{
+ long long int j;
+ long long int i;
+ long long ret;
+ long long pos;
+ long long sizeBytesPlane = dimX*dimY*dataSize;
+ char *pImage;
+ for (j=0;j<dimZ;j++)