+ typedef clitk::BinaryImageToMeshFilter<ImageType> BinaryImageToMeshFilterType;
+ typename BinaryImageToMeshFilterType::Pointer convert = BinaryImageToMeshFilterType::New();
+ convert->SetInput(m_Input);
+ DD("Update");
+ convert->Update();
+ DD("here");
+ DD("end update");
+ vtkPolyData* mesh = convert->GetOutputMesh();
+ DD(mesh->GetNumberOfVerts());
+ DD(mesh->GetNumberOfLines());
+ DD(mesh->GetNumberOfPolys());
+ DD(mesh->GetNumberOfStrips());
+
+ // Add on (FIXME) to replace with binary image
+ // vtkPolyData* blank = vtkPolyData::New();
+ // writer->SetInput(0, blank);
+ writer->SetInput(0, mesh);
+ roiNames->InsertValue(0, "blank");
+ roiAlgorithms->InsertValue(0, "blank");
+ roiTypes->InsertValue(0, "ORGAN");
+
+ for (unsigned int i = 1; i < numMasks; ++i) {
+ // DD(i);
+ writer->SetInput(i, reader->GetOutput(i-1));
+ std::string theString = reader->GetRTStructSetProperties()->GetStructureSetROIName(i-1);
+ roiNames->InsertValue(i, theString);
+ theString = reader->GetRTStructSetProperties()->GetStructureSetROIGenerationAlgorithm(i-1);
+ roiAlgorithms->InsertValue(i, theString);
+ theString = reader->GetRTStructSetProperties()->GetStructureSetRTROIInterpretedType(i-1);
+ roiTypes->InsertValue(i, theString);
+ }
+
+
+ /*
+ // Visu
+ vtkPolyDataMapper *cubeMapper = vtkPolyDataMapper::New();
+ cubeMapper->SetInput( mesh );
+ cubeMapper->SetScalarRange(0,7);
+ vtkActor *cubeActor = vtkActor::New();
+ cubeActor->SetMapper(cubeMapper);
+ vtkProperty * property = cubeActor->GetProperty();
+ property->SetRepresentationToWireframe();
+
+ vtkRenderer *renderer = vtkRenderer::New();
+ vtkRenderWindow *renWin = vtkRenderWindow::New();
+ renWin->AddRenderer(renderer);
+
+ vtkRenderWindowInteractor *iren = vtkRenderWindowInteractor::New();
+ iren->SetRenderWindow(renWin);
+
+ renderer->AddActor(cubeActor);
+ renderer->ResetCamera();
+ renderer->SetBackground(1,1,1);
+
+ renWin->SetSize(300,300);
+
+ renWin->Render();
+ iren->Start();
+ */
+
+
+ // End visu
+
+
+ vtkRTStructSetProperties* theProperties = vtkRTStructSetProperties::New();
+ DD(p->GetStudyInstanceUID());
+ writer->SetRTStructSetProperties(theProperties);
+ /*writer->InitializeRTStructSet2(p,"./",
+ reader->GetRTStructSetProperties()->GetStructureSetLabel(),
+ reader->GetRTStructSetProperties()->GetStructureSetName(),
+ roiNames, roiAlgorithms, roiTypes);*/
+ writer->InitializeRTStructSet(m_DicomFolder,
+ reader->GetRTStructSetProperties()->GetStructureSetLabel(),
+ reader->GetRTStructSetProperties()->GetStructureSetName(),
+ roiNames, roiAlgorithms, roiTypes);
+
+ DD("after init");
+ writer->Write();
+ DD("write done");
+
+ reader->Delete();
+ roiNames->Delete();
+ roiTypes->Delete();
+ //theProperties->Delete();
+ roiAlgorithms->Delete();
+ //blank->Delete();
+ writer->Delete();
+
+ ////////////////////
+
+
+ /*
+
+ // DicomRTStruct
+ DD(m_StructureSet->GetName());
+ clitk::DicomRT_ROI * roi = m_StructureSet->GetROIFromROINumber(1); // Aorta