- thresholdFilter->SetOutsideValue(mArgsInfo.bg_arg);
-
- thresholdFilter->Update();
-
- // If no BG or no FG : new image, copy input with MaskImageFilter
- // If setFG -> FG BG have been changed
- if (0) {
- if (mArgsInfo.setBG_flag || mArgsInfo.setFG_flag) {
- DD("set BG!!!!");
- //if ()
- typedef itk::MaskImageFilter<InputImageType,OutputImageType> maskFilterType;
- typename maskFilterType::Pointer maskFilter = maskFilterType::New();
- maskFilter->SetInput1(input);
- maskFilter->SetInput2(thresholdFilter->GetOutput());
- maskFilter->Update();
- typename InputImageType::Pointer outputImage = maskFilter->GetOutput();
- // Write/Save results
- this->template SetNextOutput<InputImageType>(outputImage);
- }
+
+ if (mArgsInfo.lower_given) thresholdFilter->SetLowerThreshold(static_cast<PixelType>(mArgsInfo.lower_arg));
+ if (mArgsInfo.upper_given) thresholdFilter->SetUpperThreshold(static_cast<PixelType>(mArgsInfo.upper_arg));
+
+ // DD(mArgsInfo.lower_given);
+ // DD(mArgsInfo.upper_given);
+ // DD(mArgsInfo.lower_arg);
+ // DD(mArgsInfo.upper_arg);
+ // DD(mArgsInfo.fg_arg);
+ // DD(mArgsInfo.bg_arg);
+ // DD(mArgsInfo.fg_given);
+ // DD(mArgsInfo.bg_given);
+ // DD(mArgsInfo.mode_arg);
+
+// <<<<<<< clitkBinarizeImageGenericFilter.txx
+// DD(mArgsInfo.useFG_flag);
+// DD(mArgsInfo.useBG_flag);
+
+// thresholdFilter->SetInsideValue(mArgsInfo.fg_arg);
+
+// // Keep BG value to 0 if maskFilterType is used after
+// if (mArgsInfo.useBG_flag && mArgsInfo.useFG_flag) {
+// thresholdFilter->SetOutsideValue(mArgsInfo.bg_arg);
+// }
+// else {
+// DD("0");
+// thresholdFilter->SetOutsideValue(0);
+// }
+
+// // thresholdFilter->Update();
+
+// // If no BG or no FG : new image, copy input with MaskImageFilter
+// // If setFG -> FG BG have been changed
+// if (mArgsInfo.useBG_flag && mArgsInfo.useFG_flag) {
+// =======
+ /* Three modes :
+ - FG -> only use FG value for pixel in the Foreground (or Inside), keep input values for outside
+ - BG -> only use BG value for pixel in the Background (or Outside), keep input values for inside
+ - both -> use FG and BG (real binary image)
+ */
+ if (mArgsInfo.mode_arg == std::string("both")) {
+ thresholdFilter->SetOutsideValue(mArgsInfo.bg_arg);
+ thresholdFilter->Update();
+ //>>>>>>> 1.5
+ typename OutputImageType::Pointer outputImage = thresholdFilter->GetOutput();
+ this->template SetNextOutput<OutputImageType>(outputImage);