+ }*/
+
+ ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
+
+ extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
+
+int method=2;
+ if (method==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( 15 );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ //--Adding contour to the system
+
+ std::vector<int> actualInstantVector;
+ _instantPanel->getInstant( actualInstantVector );
+ actualInstantVector[1]=z;
+
+ int j,sizeCtrPt = vecCtrlPointX.size();
+
+ manualContourModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
+ manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
+ if (sizeCtrPt>=3){
+ for (j=0 ; j<sizeCtrPt ; j++)
+ {
+ manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
+ } // for
+ std::string theName;
+ //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
+ theName = kernelManager->createOutline( manModelContour, actualInstantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
+ //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
+ } // if addedModel
+ } // if sizeCtrPt
+
+
+
+ WriterType::Pointer writer = WriterType::New();
+ CastFilterType3::Pointer caster = CastFilterType3::New();
+
+ caster->SetInput( gradientMagnitude->GetOutput() );
+ writer->SetInput( caster->GetOutput() );
+ writer->SetFileName("Gradient Magnitude.png");
+ caster->SetOutputMinimum( 0 );
+ caster->SetOutputMaximum( 255 );
+ writer->Update();
+
+ CastFilterType3::Pointer caster2 = CastFilterType3::New();
+ WriterType::Pointer writer2 = WriterType::New();
+
+ caster2->SetInput( sigmoid->GetOutput() );
+ writer2->SetInput( caster2->GetOutput() );
+ writer2->SetFileName("Sigmoid.png");
+ caster2->SetOutputMinimum( 0 );
+ caster2->SetOutputMaximum( 255 );
+ writer2->Update();
+
+ CastFilterType3::Pointer caster3 = CastFilterType3::New();
+ WriterType::Pointer writer3 = WriterType::New();
+
+ caster3->SetInput( fastMarching->GetOutput() );
+ writer3->SetInput( caster3->GetOutput() );
+ writer3->SetFileName("FastMarching.bmp");
+ caster3->SetOutputMinimum( 0 );
+ caster3->SetOutputMaximum( 255 );
+ writer3->Update();
+
+ CastFilterType3::Pointer caster4 = CastFilterType3::New();
+ WriterType::Pointer writer4 = WriterType::New();
+
+ caster4->SetInput( geodesicActiveContour->GetOutput() );
+ writer4->SetInput( caster4->GetOutput() );
+ writer4->SetFileName("GeodesicActiveContour.png");
+ caster4->SetOutputMinimum( 0 );
+ caster4->SetOutputMaximum( 255 );
+ writer4->Update();
+
+ CastFilterType3::Pointer caster5 = CastFilterType3::New();
+ WriterType::Pointer writer5 = WriterType::New();
+
+ caster5->SetInput( zeroCrossing->GetOutput() );
+ writer5->SetInput( caster5->GetOutput() );
+ writer5->SetFileName("ZeroCrossing.bmp");
+ caster5->SetOutputMinimum( 0 );
+ caster5->SetOutputMaximum( 255 );
+ writer5->Update();
+ }
+ catch( itk::ExceptionObject & excep )
+ {
+ std::cerr << "Exception caught !" << std::endl;
+ std::cerr << excep << std::endl;
+ }
+}
+
+void wxContourMainFrame::onSegmentationOneSlice(int isovalue,int sampling,int method){
+
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ int x = _theViewPanel->GetX();
+ int y = _theViewPanel->GetY();
+ int z = _theViewPanel->GetZ();
+ SegmentationOneSlice( x,y,z,isovalue, sampling, method );
+ RefreshInterface();
+}
+
+
+void wxContourMainFrame::SegmentationOneSlice( int x, int y, int z, int isovalue, int sampling, int method )
+{
+ int typeofcontour = 1;
+ //--Extracting Contour
+ //vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
+ vtkImageData *imagedata = getImageData();
+// double *range = imagedata->GetScalarRange();
+// double thr = 1;
+
+ vtkImageReslice *imageReslice = vtkImageReslice::New();
+//EED
+// double spc[3];
+// imagedata->GetSpacing(spc);
+// x = x*spc[0];
+// y = y*spc[1];
+// z = z*spc[3];
+
+ imageReslice->SetInput( imagedata );
+ imageReslice->SetInformationInput(imagedata);
+ imageReslice->SetResliceAxesDirectionCosines(1,0,0, 0,1,0 ,0,0,1);
+ imageReslice->SetResliceAxesOrigin(0,0,z);
+ imageReslice->SetOutputDimensionality(2);
+ imageReslice->SetInterpolationModeToLinear();
+
+ imagedata = imageReslice->GetOutput();
+ imagedata->Update();
+ imagedata->UpdateInformation();
+
+ vtkContourFilter* cntVTK = vtkContourFilter::New( );
+ cntVTK->SetInput( imagedata );
+
+ cntVTK->SetNumberOfContours( 1 );
+ //cntVTK->SetValue( 0, vmin );
+// cntVTK->SetValue( 0, (range[1]*thr/100) );
+ cntVTK->SetValue( 1, isovalue );
+// cntVTK->SetValue( 1, vmax );
+ cntVTK->Update( );
+ cntVTK->UpdateInformation();
+
+ vtkCleanPolyData* cpd = vtkCleanPolyData::New( );
+ cpd->SetInput( cntVTK->GetOutput( ) );
+ cpd->ConvertLinesToPointsOff( );
+ cpd->Update( );
+ cpd->UpdateInformation();
+
+ vtkPolyDataConnectivityFilter* conn = vtkPolyDataConnectivityFilter::New( );
+ conn->SetExtractionModeToClosestPointRegion( );
+ //conn->SetMaxRecursionDepth( 3000 );
+
+ conn->SetInput( cpd->GetOutput( ) );
+
+ conn->SetClosestPoint( x, y, 0 );
+ conn->Update( );
+ conn->UpdateInformation();
+
+ vtkCleanPolyData* cpd2 = vtkCleanPolyData::New( );
+ cpd2->SetInput( conn->GetOutput( ) );
+ cpd2->Update();
+ cpd2->UpdateInformation();
+
+ vtkStripper* vtkstripper = vtkStripper::New( );
+ vtkstripper->SetInput( cpd2->GetOutput() );
+ vtkstripper->Update();
+ vtkstripper->UpdateInformation();
+
+
+ vtkPolyData* polyDataResult = vtkstripper->GetOutput();
+
+ polyDataResult->Update( );
+ polyDataResult->UpdateInformation();
+
+/* EED
+ofstream myfile;
+myfile.open ("c:/temp/example.txt");
+myfile << "\n";
+polyDataResult->Print(myfile);
+myfile << "-------------------------------------\n";
+polyDataResult->GetLines()->Print(myfile);
+myfile.close();
+*/
+
+ cntVTK -> Delete();
+ cpd2 -> Delete();
+ cpd -> Delete();
+ conn -> Delete();
+
+
+//--Calculating control points
+
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecZ;
+
+ std::vector<double> vecCtrlPointX;
+ std::vector<double> vecCtrlPointY;
+ std::vector<double> vecCtrlPointZ;
+
+
+ double *p;
+ int ii,size=polyDataResult->GetNumberOfPoints();
+ int id;
+ for (ii=1;ii<=size;ii++)
+ {
+ id = polyDataResult->GetLines()->GetData()->GetValue(ii);
+ p = polyDataResult->GetPoint(id);
+// double x=p[0];
+// double y=p[1];
+ vecX.push_back( p[0] );
+ vecY.push_back( p[1] );
+ vecZ.push_back( -900 );
+// vecZ.push_back( p[2] );
+ }
+
+
+ ExtractControlPoints2D *extractcontrolpoints2d = new ExtractControlPoints2D();
+ extractcontrolpoints2d->SetContour( &vecX , &vecY , &vecZ );
+
+//PROOFS
+ /*if (methodRadiobox->GetSelection()==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ if (methodRadiobox->GetSelection()==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ if (methodRadiobox->GetSelection()==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( sampling );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }*/
+
+ if (method==0){
+ extractcontrolpoints2d->GetInitialControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==1){
+ extractcontrolpoints2d->GetControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+ else if (method==2){
+ extractcontrolpoints2d->SetSamplingControlPoints( sampling );
+ extractcontrolpoints2d->GetSamplingControlPoints( &vecCtrlPointX , &vecCtrlPointY , &vecCtrlPointZ );
+ }
+
+ //--Adding contour to the system
+
+ std::vector<int> actualInstantVector;
+ _instantPanel->getInstant( actualInstantVector );
+ actualInstantVector[1]=z;
+
+ int j,sizeCtrPt = vecCtrlPointX.size();
+ manualContourModel *manModelContour = kernelManager->factoryManualContourModel( typeofcontour );
+ manModelContour->SetNumberOfPointsSpline( ((sizeCtrPt/100)+1)*100 );
+ if (sizeCtrPt>=3){
+ for (j=0 ; j<sizeCtrPt ; j++)
+ {
+ manModelContour->AddPoint( vecCtrlPointX[j] , vecCtrlPointY[j] , vecCtrlPointZ[j] );
+ } // for
+ std::string theName;
+ //theName = _modelManager->createOutline( manModelContour, actualInstantVector );
+ theName = kernelManager->createOutline( manModelContour, actualInstantVector );
+ bool addedModel = theName.compare("") != 0;
+ if( addedModel )
+ {
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ _theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo(theName, manModelContour, spc, typeofcontour);
+ //_theViewPanel->getSceneManager()->configureViewControlTo( theName, manModelContour,spc, typeofcontour ) ;
+ } // if addedModel
+ } // if sizeCtrPt
+}
+
+int wxContourMainFrame::GetImageDataSizeZ(){
+ return _theViewPanel->GetImageDataSizeZ();
+}
+
+void wxContourMainFrame::GetImageDataRange(double *range){
+ _theViewPanel->GetImageDataRange(range);
+}
+
+void wxContourMainFrame::onSegmentationAllSlice(int minZ,int maxZ,int isovalue,int sampling,int method){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ int x = _theViewPanel->GetX();
+ int y = _theViewPanel->GetY();
+ int z;
+ double porcent;
+ wxString tmpString;
+ double totalZ = maxZ-minZ+1;
+ for( z=minZ ; z<=maxZ ; z++ )
+ {
+ porcent = 100.0* (z-minZ)/totalZ;
+ tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ,z );
+ interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(tmpString);
+ //_staticTextSegmentation->SetLabel(tmpString);
+ SegmentationOneSlice( x,y,z,isovalue, sampling,method );
+ }
+ interfMainPanel::getInstance()->setLabelSegmentationPanelVTK(_T(" "));
+ RefreshInterface();
+}
+
+
+//Creates a reference line to be used as the axis of the mirroring
+void wxContourMainFrame::referenceLine()
+{
+ wxBusyCursor wait;
+ double spc[3];
+
+ vtkImageData *vtkimagedata = _theViewPanel->getImageData();
+ vtkimagedata->GetSpacing(spc);
+
+ wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
+
+ _refLineControl = new manualLineControler();
+ _refLineModel = new manualContourModelLine();
+ _refLineView = new manualViewLine();
+ _refLineView->SetModel( _refLineModel );
+ _refLineView->SetWxVtkBaseView( viewer2D );
+ _refLineView->SetRange( 2 );
+ _refLineView->SetZ( 1200 );
+
+ _refLineView->SetSpacing(spc);
+
+ _refLineView->SetColorNormalContour(0, 0, 1);
+ _refLineView->SetColorEditContour(0, 0.5, 0.5);
+ _refLineView->SetWidthLine(4);
+
+ _refLineControl->SetModelView( _refLineModel , _refLineView );
+ viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
+ _refLineModel->SetCloseContour(false);
+ _refLineControl->CreateNewManualContour();
+
+ double z = _refLineControl->GetZ();
+/*
+ _refLineControl->AddPoint(50,100,z);
+ _refLineControl->AddPoint(80,40,z);
+ _refLineControl->SetCompleteCreation(true);
+
+ _refLineModel->AddPoint(50,100,z);
+ _refLineModel->AddPoint(80,40,z);
+ _refLineModel->UpdateSpline();
+
+ _refLineView->UpdateViewPoint(0);
+ _refLineView->UpdateViewPoint(1);
+*/
+
+ _refLineControl->SetActive(true);
+ _refLineView->RefreshContour();
+}
+
+//Hides the referenceLine
+void wxContourMainFrame::refLineHide()
+{
+ if (_refLineControl!=NULL)
+ {
+ _refLineView->RemoveCompleteContourActor();
+ _refLineControl->SetEditable(false);
+ _refLineControl->SetActive(false);
+ }
+}
+
+//Shows the referenceLine
+void wxContourMainFrame::refLineShow()
+{
+ if (_refLineControl!=NULL)
+ {
+ wxVtkBaseView * viewer2D = _theViewPanel->getWxVtkBaseView();
+
+ _refLineView->SetModel( _refLineModel );
+ _refLineView->SetWxVtkBaseView( viewer2D );
+ _refLineView->SetRange( 2 );
+ _refLineView->SetZ( 1200 );
+
+ _refLineControl->SetModelView( _refLineModel , _refLineView );
+ viewer2D->GetInteractorStyleBaseView()->AddInteractorStyleMaracas( _refLineControl );
+ _refLineControl->CreateNewManualContour();
+ _refLineControl->SetActive(true);
+ _refLineView->RefreshContour();
+ }
+}
+
+void wxContourMainFrame::onMirror()
+{
+ //AD:02-09
+ std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
+ std::vector<std::string> filterCurrentSelection;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ _performingOperation->reset();
+ _performingOperation->setStartCommand( COPY );
+ _performingOperation->setStartOperationInstantVector( tempVector );
+ _performingOperation->setKeyNamesOperationElems( currentSelection );
+
+ char theStartCommand = _performingOperation->getStartCommand();
+ if ( theStartCommand == COPY )
+ {
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ _performingOperation->setEndOperationInstantVector ( tempVector );
+ std::vector<std::string> elems = _performingOperation->getKeyNamesOperationElems();
+ int i,size = elems.size();
+ for( i=0; i<size; i++ )
+ {
+ createMirrorContourOf( elems[i], tempVector, i>0 );
+ }
+ }
+
+ //deleteContour( _refName );
+ //_refName = "";
+}
+
+void wxContourMainFrame::showAxis(bool show){
+ _theViewPanel->SetVisibleAxis(show);
+ _theViewPanel->Refresh();
+}
+
+
+void wxContourMainFrame::onRigidPressed(){
+ std::vector<std::string> currentSelection = _theViewPanel->getSelectedObjects();
+ int elementsSelected = currentSelection.size();
+
+ if ( elementsSelected >= 1 ){
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ Instant instant(&tempVector);
+
+ int i , size=currentSelection.size();
+ for ( i=0 ; i<size ; i++ )
+ {
+ kernelManager->changeContourOfManager(currentSelection[i], &instant);
+ } // i
+ }
+}
+
+void wxContourMainFrame::onWidthOfContour(double width){
+
+ _theViewPanel->removeSceneContours();
+ _theViewPanel->SetWidthContour(width);
+
+ //_theViewPanel->getSceneManager()->SetWidthContour( width );
+
+ RefreshInterface();
+}
+int wxContourMainFrame::getColorWindow(){
+ return _theViewPanel->getColorWindow();
+}
+int wxContourMainFrame::getWindowLevel(){
+ return _theViewPanel->getWindowLevel();
+}
+
+void wxContourMainFrame::onBrigthnessColorWindowLevel(int colorwindow,int windowlevel){
+ _theViewPanel->onBrigthnessColorWindowLevel(colorwindow, windowlevel);
+
+
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onInterpolation(bool interpolate){
+ _theViewPanel->onInterpolation(interpolate);
+ RefreshInterface();
+}
+
+void wxContourMainFrame::onChangeInstant(std::string name,int actual){
+ _instantPanel->setConceptValue( name, actual );
+}
+
+void wxContourMainFrame::resetAppend(){
+ kernelManager->resetAppend();
+
+}
+
+void wxContourMainFrame::onSpreadAdd(){
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecZ;
+ _theViewPanel->GetPointsOfActualContour(&vecX , &vecY , &vecZ );
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+ std::string val = kernelManager->onSpreadAdd(&vecX , &vecY , &vecZ, tempVector);
+
+ interfMainPanel::getInstance()->appendStringSpread(val);
+
+}
+
+void wxContourMainFrame::onSpreadGo(int type){
+
+ //JCP 20-10-08 Undo redo implementation
+ saveState();
+ //JCP 20-10-08 Undo redo implementation
+
+ wxBusyCursor wait;
+ std::vector<double> vecCtrlPointX;
+ std::vector<double> vecCtrlPointY;
+ std::vector<double> vecCtrlPointZ;
+ double minZ,maxZ;
+ int z;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+// tempVector[1];
+
+ kernelManager->getMaxMinZ(&minZ,&maxZ);
+//JSTG_16-07-08_----------------------------------------------------------------
+ //_contourPropagation->setInterpolationNumber(maxZ-minZ+1);
+ kernelManager->CalculeSplinePropagation();
+
+ double totalZ = maxZ-minZ+1;
+ double porcent;
+ wxString tmpString;
+//--------------------------------------------------------------------
+ for ( z=(int)minZ ; z<=(int)maxZ ; z++ )
+ {
+ porcent = 100.0* (z-minZ)/totalZ;
+ int numero = (int)(z-minZ+1)/(int)totalZ;
+ std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
+
+ interfMainPanel::getInstance()->setStringSpread(stringtemp);
+
+ int typeofcontour = 1;
+ std::string theName;
+ manualContourModel* manModelContour = kernelManager->GetPoints(z, type, &vecCtrlPointX,&vecCtrlPointY,&vecCtrlPointZ, theName,typeofcontour, tempVector);
+
+ if( manModelContour!=NULL ){
+ double spc[3];//Si no hay imagen pero hay contornos que spacing se pone por default
+ this->_theViewPanel->getSpacing(spc);
+ //Adding the manualContourControler to interface objects structure
+ //Adding the manualViewContour to interface objects structure
+ //_theViewPanel->getSceneManager()->setControlActiveStateOfALL( false );//This call is being done here because if the ROI is created underneath the previously created ROIS will still be active.
+ _theViewPanel->configureViewControlTo( theName, manModelContour,spc,typeofcontour ) ;
+ } // if addedModel
+ }
+ if(z > maxZ){
+ porcent = 100.0;
+ int numero = (int)(z-minZ+1)/(int)totalZ;
+ std::string stringtemp = " "+kernelManager->intToString(porcent)+"% "+kernelManager->intToString(numero)+" "+kernelManager->intToString(z);
+
+ interfMainPanel::getInstance()->setStringSpread(stringtemp);
+ }// for z
+ //RefreshInterface();
+}
+
+void wxContourMainFrame::getInstantVector(std::vector<int>& tempVector){
+
+}
+
+std::vector<std::string> wxContourMainFrame::getOutlinesName(int slide){
+ std::vector<int> tempVector;
+ _instantPanel->getInstant(tempVector);
+ //Asignation of slide number should be different ex by name
+ tempVector[1]=slide;
+ return kernelManager->getOutlinesNameAtInstant(tempVector);
+}
+
+void wxContourMainFrame::onInformationContourLabels(int typeContourGroup,int selection,int minimumZ,int maximumZ){
+ int maxContourGroup = 0;
+
+ ContourExtractData *contourextractdata = new ContourExtractData();
+
+ contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
+
+ std::vector<manualContourModel*> lstManConMod;
+ std::vector<manualContourModel*> lstManConModTmp;
+ std::vector<manualContourModel*> lstManConModExp;
+ std::vector<double> pLstValue;
+ std::vector<double> pLstValuePosX;
+ std::vector<double> pLstValuePosY;
+ std::vector<double> pLstValuePosZ;
+
+ int resultSize;
+ int resultGrayRangeCount;
+ double resultMin;
+ double resultMax;
+ double resultAverage;
+ double resultStandardeviation;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+ vtkImageData *imagedata = _theViewPanel->getImageData();
+ int sizeZ = _theViewPanel->GetImageDataSizeZ();
+ int z;
+ int ii,sizeLstContourThings;
+
+
+ int minZ,maxZ;
+ double totalZ;
+ double porcent;
+ wxString tmpString;
+
+
+
+ if (selection==0 ) // actual slice
+ {
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ int actualSlice = tempVector[1];
+ minZ = actualSlice;
+ maxZ = actualSlice;
+ }
+ else if (selection==2 ) // All slices
+ {
+ minZ = 0;
+ maxZ = sizeZ-1;
+ }
+ else if (selection==1 ) // slice range
+ {
+ minZ = minimumZ;
+ maxZ = maximumZ;
+ }
+
+
+ totalZ = maxZ-minZ+1;
+ contourextractdata->SetImage( imagedata);
+
+// For each slice..
+ for ( z=minZ ; z<=maxZ ; z++ )
+ {
+
+ porcent = 100.0* (z-minZ)/totalZ;
+ tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
+
+ interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
+ //_staticTextInformation->SetLabel(tmpString);
+
+ //Extraction data from contours of each slice
+ contourextractdata->SetZtoBeAnalys( z);
+
+ tempVector[1]=z;
+ Instant instant(&tempVector);
+ std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
+ sizeLstContourThings = lstContourThings.size();
+
+ lstManConMod.clear();
+ for (ii=0 ; ii<sizeLstContourThings ; ii++)
+ {
+ ContourThing **contourthing = lstContourThings[ii];
+ lstManConMod.push_back( (*contourthing)->getModel() );
+ }
+ lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
+
+
+ wxString tempString;
+ tempString.Printf(_T("%d - %d"),z, sizeLstContourThings);
+ interfMainPanel::getInstance()->setRowLabelInfoPanel(z, tempString);
+ //_grid->SetRowLabelValue(z, tempString );
+//EED004
+ int iContourGroup,sizeContourGroup;
+ if (typeContourGroup==3) // contour separete
+ {
+ sizeContourGroup=lstManConModExp.size();
+ if ( maxContourGroup<sizeContourGroup )
+ {
+ maxContourGroup=sizeContourGroup;
+ }
+ } else { // contour AND OR XOR
+ sizeContourGroup=1;
+ maxContourGroup=1;
+ }
+
+ int tmpIntA;
+
+
+
+ for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
+ lstManConModTmp.clear();
+ if (typeContourGroup==3) // contour separete
+ {
+ lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
+ } else { // contour AND OR XOR
+ lstManConModTmp = lstManConModExp;
+ }
+
+ contourextractdata->SetLstManualContourModel( lstManConModTmp );
+
+ pLstValue.clear();
+ pLstValuePosX.clear();
+ pLstValuePosY.clear();
+ pLstValuePosZ.clear();
+ contourextractdata->GetValuesInsideCrown( &pLstValue,
+ &pLstValuePosX,
+ &pLstValuePosY,
+ &pLstValuePosZ);
+ // Statistics of each slice.
+ contourextractdata->Statistics( &pLstValue,
+ minimumZ,
+ maximumZ,
+ &resultGrayRangeCount,
+ &resultSize,
+ &resultMin,
+ &resultMax,
+ &resultAverage,
+ &resultStandardeviation);
+
+ if (interfMainPanel::getInstance()->getNumberColsInformationPanel()<_numberOfVariablesStatistics*(iContourGroup+1) )
+ {
+ interfMainPanel::getInstance()->appendColsInformationPanel(_numberOfVariablesStatistics);
+ }
+
+ tmpIntA=_numberOfVariablesStatistics*iContourGroup ;
+
+ tempString.Printf(_T("%d"),resultSize);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA, tempString);
+
+ tempString.Printf(_T("%d"),resultGrayRangeCount);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+1, tempString);
+
+ tempString.Printf(_T("%f"),resultMin);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+2, tempString);
+
+ tempString.Printf(_T("%f"),resultMax);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+3, tempString);
+
+ tempString.Printf(_T("%f"),resultAverage);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+4, tempString);
+
+ tempString.Printf(_T("%f"),resultStandardeviation);
+ interfMainPanel::getInstance()->setCellValueInfoPanel(z, tmpIntA+5, tempString);
+
+
+ } // for iContourGroup
+ } // for z
+
+ int iTitleGroup;
+ wxString tmpTitleString;
+ int tmpIntB;
+ for ( iTitleGroup=0 ; iTitleGroup<maxContourGroup ; iTitleGroup++ )
+ {
+ tmpIntB =_numberOfVariablesStatistics*iTitleGroup;
+ tmpTitleString.Printf(_T("%d-Size Data"),iTitleGroup);
+ interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString);
+
+ interfMainPanel::getInstance()->setColLableInfoPanel(tmpIntB + 0, tmpTitleString );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 1, _T("Size Range") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 2, _T("Min") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 3, _T("Max") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 4, _T("Average") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 5, _T("St.Dev.") );
+ interfMainPanel::getInstance()->setColLableInfoPanel( tmpIntB + 6, _T(" ") );
+ }
+
+ interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
+ delete contourextractdata;
+}
+
+void wxContourMainFrame::onSaveResults(std::string directory,std::string namefile, std::string filename, int typeContourGroup){
+ SaveValuesXYZ( directory , namefile, typeContourGroup );
+ SaveImageResult( directory , namefile, typeContourGroup);
+
+
+ FILE *pFile=fopen(filename.c_str(),"w+");
+
+ int sizeZ = _theViewPanel->GetImageDataSizeZ();
+
+ wxString tmpString;
+ int i,j,maxX,maxY=sizeZ;
+ maxX= interfMainPanel::getInstance()->getNumberColsInformationPanel();//this->_grid->GetNumberCols();
+
+ int iTitle,sizeTitle = (maxX / _numberOfVariablesStatistics);
+ for ( iTitle=0; iTitle<sizeTitle ; iTitle++)
+ {
+ // fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle,tmpString.c_str() );
+ fprintf(pFile,"-- \t %d-Size \t SizeRange \t Min \t Max \t Ave \t StDv \t" , iTitle );
+ }
+ fprintf(pFile,"\n" );
+
+
+
+ for ( j=0; j<maxY ; j++)
+ {
+ fprintf(pFile,"%d\t" , j );
+ for (i=0 ; i<maxX ; i++){
+ tmpString = interfMainPanel::getInstance()->getCellValue(j, i);//_grid->GetCellValue( j , i );
+ fprintf(pFile,"%s\t" , (const char *)(tmpString.mb_str()) );
+ } // for i
+ fprintf(pFile,"\n" );
+ } // for j
+
+ fclose(pFile);
+}
+
+void wxContourMainFrame::SaveValuesXYZ(std::string directory,std::string namefile,int typeContourGroup)
+{
+ wxBusyCursor wait;
+ ContourExtractData *contourextractdata = new ContourExtractData();
+ //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
+ contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
+
+ std::vector<manualContourModel*> lstManConMod;
+ std::vector<manualContourModel*> lstManConModTmp;
+ std::vector<manualContourModel*> lstManConModExp;
+ std::vector<double> pLstValue;
+ std::vector<double> pLstValuePosX;
+ std::vector<double> pLstValuePosY;
+ std::vector<double> pLstValuePosZ;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+ vtkImageData *imagedata = _theViewPanel->getSceneManager()->GetImageData();
+ int sizeZ = _theViewPanel->getSceneManager()->GetImageDataSizeZ();
+ int z;
+ int ii,sizeLstContourThings;
+
+
+ int minZ,maxZ;
+ double totalZ;
+ double porcent;
+ wxString tmpString;
+ minZ = 0;// _mbarrange->GetStart();
+ maxZ = sizeZ;//_mbarrange->GetEnd();
+ totalZ = maxZ-minZ+1;
+
+ contourextractdata->SetImage( imagedata);
+
+// For each slice..
+ for ( z=0 ; z<sizeZ ; z++)
+ {
+
+ porcent = 100.0* (z-minZ)/totalZ;
+
+ tmpString.Printf(_T("Saving Values"));
+ tmpString.Printf(_T(" %d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
+ interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
+ //_staticTextInformation->SetLabel(tmpString);
+
+
+ //Extraction data from contours of each slice
+ contourextractdata->SetZtoBeAnalys( z);
+
+ tempVector[1]=z;
+ Instant instant(&tempVector);
+ std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant(&instant);//this->_modelManager->getOutlinesAtInstant( &instant );
+ sizeLstContourThings = lstContourThings.size();
+
+ lstManConMod.clear();
+ for (ii=0 ; ii<sizeLstContourThings ; ii++)
+ {
+ ContourThing **contourthing = lstContourThings[ii];
+ lstManConMod.push_back( (*contourthing)->getModel() );
+ }
+ lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
+
+
+//EED004
+
+ int iContourGroup,sizeContourGroup;
+ if (typeContourGroup==3) // contour separete
+ {
+ sizeContourGroup=lstManConModExp.size();
+ } else { // contour AND OR XOR
+ sizeContourGroup=1;
+ }
+
+ for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
+ lstManConModTmp.clear();
+ if (typeContourGroup==3) // contour separete
+ {
+ lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
+ } else { // contour AND OR XOR
+ lstManConModTmp = lstManConModExp;
+ }
+
+ contourextractdata->SetLstManualContourModel( lstManConModTmp );
+
+ pLstValue.clear();
+ pLstValuePosX.clear();
+ pLstValuePosY.clear();
+ pLstValuePosZ.clear();
+ contourextractdata->GetValuesInsideCrown( &pLstValue,
+ &pLstValuePosX,
+ &pLstValuePosY,
+ &pLstValuePosZ);
+
+ std::string temp = directory + "/" + namefile + "-slice";
+ temp = temp + kernelManager->intToString(z) + "-cont" + kernelManager->intToString(iContourGroup);
+ temp = temp + ".txt";
+
+ // LG 14/01/09 : using crea
+ wxString filename = crea::std2wx(temp);
+ /*filename.Printf(_T("%s"),directory.c_str());
+ filename.append(_T("\\"));
+ filename.append(_T("%s"),namefile.c_str());
+ filename.append(_T("-slice"));
+ filename.append(_T("%d"),z);
+ filename.append(_T("-cont"));
+ filename.append(_T("%d"),iContourGroup);
+ filename.append(_T(".txt"));*/
+ // filename.Printf(temp.c_str());
+
+
+
+ FILE *pFile=fopen((const char *)filename.mb_str(),"w+");
+ fprintf(pFile,"value \t x \t y \t z\n" );
+ int iLstValue,sizeLstValue=pLstValue.size();
+ for (iLstValue=0 ; iLstValue<sizeLstValue ; iLstValue++ )
+ {
+ fprintf(pFile,"%f\t %f\t %f\t %f\n", (float)pLstValue[iLstValue] , (float)pLstValuePosX[iLstValue], (float)pLstValuePosY[iLstValue], (float)z );
+ }
+ fclose(pFile);
+ } // for iContourGroup
+ } // for z
+ interfMainPanel::getInstance()->setStringInfoPanel(_T(""));
+ //_staticTextInformation->SetLabel( _T("") );
+ delete contourextractdata;
+}
+
+void wxContourMainFrame::SaveImageResult(std::string directory,std::string namefile, int typeContourGroup)
+{
+ wxBusyCursor wait;
+ ContourExtractData *contourextractdata = new ContourExtractData( true );
+ //int typeContourGroup = this->_radiolstboxContourGroup->GetSelection();
+ if (typeContourGroup==3)
+ {
+ typeContourGroup=1;
+ }
+ contourextractdata ->SetTypeOperation( typeContourGroup % 3 );
+
+ std::vector<manualContourModel*> lstManConMod;
+ std::vector<manualContourModel*> lstManConModTmp;
+ std::vector<manualContourModel*> lstManConModExp;
+
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+
+ vtkImageData *imagedata = _theViewPanel->getImageData();
+ int sizeZ = _theViewPanel->GetImageDataSizeZ();
+ int z;
+ int ii,sizeLstContourThings;
+
+
+ int minZ,maxZ;
+ double totalZ;
+ double porcent;
+
+ wxString tmpString;
+
+ minZ = 0;// _mbarrange->GetStart();
+ maxZ = sizeZ;//_mbarrange->GetEnd();
+ totalZ = maxZ-minZ+1;
+
+ contourextractdata->SetImage( imagedata);
+
+// For each slice..
+ for ( z=0 ; z<sizeZ ; z++)
+ {
+
+ porcent = 100.0* (z-minZ)/totalZ;
+ tmpString.Printf(_T("Saving Values"));
+ tmpString.Printf(_T("%d %c %d/%d %d"), (int)porcent , 37 , z-minZ+1, (int)totalZ ,z);
+ interfMainPanel::getInstance()->setStringInfoPanel(tmpString);
+
+ //Extraction data from contours of each slice
+ contourextractdata->SetZtoBeAnalys( z);
+
+ tempVector[1]=z;
+ Instant instant(&tempVector);
+ std::vector<ContourThing**> lstContourThings = kernelManager->getOutlinesAtInstant( &instant );
+ sizeLstContourThings = lstContourThings.size();
+
+ lstManConMod.clear();
+ for (ii=0 ; ii<sizeLstContourThings ; ii++)
+ {
+ ContourThing **contourthing = lstContourThings[ii];
+ lstManConMod.push_back( (*contourthing)->getModel() );
+ }
+ lstManConModExp = kernelManager->ExploseEachModel( lstManConMod );
+
+
+ int iContourGroup,sizeContourGroup;
+ if (typeContourGroup==3) // contour separete
+ {
+ sizeContourGroup=lstManConModExp.size();
+ } else { // contour AND OR XOR
+ sizeContourGroup=1;
+ }
+
+ for( iContourGroup=0 ; iContourGroup<sizeContourGroup ; iContourGroup++ ){
+ lstManConModTmp.clear();
+ if (typeContourGroup==3) // contour separete
+ {
+ lstManConModTmp.push_back( lstManConModExp[iContourGroup]);
+ } else { // contour AND OR XOR
+ lstManConModTmp = lstManConModExp;
+ }
+
+ contourextractdata->SetLstManualContourModel( lstManConModTmp );
+
+
+// for (ii=0 ; ii<sizeLstContourThings ; ii++)
+// {
+// ContourThing **contourthing = lstContourThings[ii];
+// lstManConMod.push_back( (*contourthing)->getModel() );
+// }
+// contourextractdata->SetLstManualContourModel( lstManConMod );
+
+ contourextractdata->CalculateImageResult(); // with actual Z
+
+ } // for iContourGroup
+ } // for z
+
+ std::string temp = directory + "/" + namefile + "-Value.mhd";
+
+ wxString filename = crea::std2wx(temp);
+ // LG
+ // filename.Printf(_T(temp.c_str()));
+ //filename.Printf(_T("%s\\%s-Value.mhd",directory.c_str(),namefile.c_str(),z);
+ /*filename.Printf(_T("%s"),directory.c_str());
+ filename.append(_T("\\"));
+ filename.append(_T("%s"),namefile.c_str());
+ filename.append(_T("-Value.mhd"));*/
+
+// Image Value
+ vtkMetaImageWriter *writerValueImage = vtkMetaImageWriter::New( );
+ writerValueImage->SetInput( contourextractdata->GetVtkImageValueResult() );
+ writerValueImage->SetFileName( (const char *)filename.mb_str() );
+ writerValueImage->SetFileDimensionality( 3 );
+ writerValueImage->Write( );
+
+// Image Mask
+ // filename.Printf("%s\\%s-Mask.mhd",directory.c_str(),namefile.c_str(),z);
+ temp = directory + "/" + namefile + "-Mask.mhd";
+
+ // LG 14/01/09 : using crea
+ filename = crea::std2wx(temp);
+ // filename.Printf(_T(temp.c_str()));
+
+ /*filename.Printf(_T("%s"),directory.c_str());
+ filename.append(_T("\\"));
+ filename.append(_T("%s"),namefile.c_str());
+ filename.append(_T("-Mask.mhd"));*/
+
+ vtkMetaImageWriter *writerMaskImage = vtkMetaImageWriter::New( );
+ writerMaskImage->SetInput( contourextractdata->GetVtkImageMaskResult() );
+ writerMaskImage->SetFileName( (const char *)filename.mb_str() );
+ writerMaskImage->SetFileDimensionality( 3 );
+ writerMaskImage->Write( );
+
+ interfMainPanel::getInstance()->setStringInfoPanel( _T("") );
+ delete contourextractdata;
+}
+
+void wxContourMainFrame::onChangeInstantInstantPanel(std::string name,int value, int minshow, int maxshow){
+ if( name.compare( _theViewPanel->getVerticalConceptName() ) == 0){
+ _theViewPanel->setActualVertical( value);
+ }
+ else if( name.compare( _theViewPanel->getHorizontalConceptName() ) == 0|| _instantPanel->getIfConceptCheckedAt( name, 0 ) ) {
+ _theViewPanel->setHorizontalConcept( name, minshow, maxshow, minshow, maxshow, value);
+ }
+
+ changeInstant();
+}
+
+void wxContourMainFrame::onSnakePressed(){
+ std::vector<double> vecX;
+ std::vector<double> vecY;
+ std::vector<double> vecZ;
+ _theViewPanel->GetPointsOfActualContour( &vecX , &vecY , &vecZ );
+
+ if (vecX.size()!=0){
+ std::vector<int> tempVector;
+ _instantPanel->getInstant( tempVector );
+ int i,size=vecZ.size();
+ int actualSlice = tempVector[1];
+ for ( i=0 ; i<size ; i++ )
+ {
+ vecZ[i] = actualSlice;
+ } // for
+
+ wxDialog* dialog = new wxDialog(this, -1, wxString(_T("Snake")));
+ wxPanel* panel = new wxPanel(dialog,-1);
+ // wxStaticText* sttext = new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
+ new wxStaticText(panel, -1, wxString(_T("Panel para snake")));
+ dialog->ShowModal();
+ } // if
+
+}
+
+void wxContourMainFrame::saveFileWithContoursAutomatique(){
+ std::string filename = kernelManager->getCurrentFileName();
+ if(filename.compare("")!=0){
+ saveFileWithContours(filename);
+ }else{
+ onSave();
+ }
+}
\ No newline at end of file