- registration_blutdir $reference_in $target_in $mask_ref_in $mask_targ_in $vf_in $result_in $params $log_in $coeff_in $init_coeff_in
- registration_blutdir $reference_out $target_out $mask_ref_out $mask_targ_out $vf_out $result_out $params $log_out $coeff_out $init_coeff_out
+ registration_blutdir $reference_in $target_in $mask_ref_in $mask_targ_in $vf_in $result_in $params $log_in $coeff_in
+ registration_blutdir $reference_out $target_out $mask_ref_out $mask_targ_out $vf_out $result_out $params $log_out $coeff_out
elif [ "$method" == "elastix" ]; then
registration_elastix $reference_in $target_in $mask_ref_in $mask_targ_in $vf_in $result_in $params $log_in
registration_elastix $reference_out $target_out $mask_ref_out $mask_targ_out $vf_out $result_out $params $log_out
elif [ "$method" == "elastix" ]; then
registration_elastix $reference_in $target_in $mask_ref_in $mask_targ_in $vf_in $result_in $params $log_in
registration_elastix $reference_out $target_out $mask_ref_out $mask_targ_out $vf_out $result_out $params $log_out
create_mhd_4D_pattern.sh $vf_dir/vf_inside_${ref_phase_nb}_
create_mhd_4D_pattern.sh $vf_dir/vf_outside_${ref_phase_nb}_
create_mhd_4D_pattern.sh $vf_dir/vf_inside_${ref_phase_nb}_
create_mhd_4D_pattern.sh $vf_dir/vf_outside_${ref_phase_nb}_
# create 4D result image
create_mhd_4D_pattern.sh $output_dir/result_inside_${ref_phase_nb}_
create_mhd_4D_pattern.sh $output_dir/result_outside_${ref_phase_nb}_
# create 4D result image
create_mhd_4D_pattern.sh $output_dir/result_inside_${ref_phase_nb}_
create_mhd_4D_pattern.sh $output_dir/result_outside_${ref_phase_nb}_
echo "Calculating midp_$phase_nb.mhd..."
vf_midp_in=$midp_dir/vf_inside_midp_$phase_nb.mhd
vf_midp_out=$midp_dir/vf_outside_midp_$phase_nb.mhd
echo "Calculating midp_$phase_nb.mhd..."
vf_midp_in=$midp_dir/vf_inside_midp_$phase_nb.mhd
vf_midp_out=$midp_dir/vf_outside_midp_$phase_nb.mhd