+ ImageConstPointer m_Input;
+ MaskImagePointer m_Mediastinum;
+ MaskImagePointer m_Working_Support;
+ std::map<std::string, MaskImagePointer> m_ListOfStations;
+ std::map<std::string, MaskImagePointer> m_ListOfSupports;
+ MaskImagePixelType m_BackgroundValue;
+ MaskImagePixelType m_ForegroundValue;
+ std::map<std::string, bool> m_ComputeStationMap;
+
+ bool CheckForStation(std::string station);
+ void Remove_Structures(std::string station, std::string s);
+
+ // Functions common to several stations
+ void FindLineForS7S8Separation(MaskImagePointType & A, MaskImagePointType & B);
+ double FindCarinaSlicePosition();
+ void FindLeftAndRightBronchi();
+
+ // Global parameters
+ typedef std::map<std::string, double> FuzzyThresholdByStructureType;
+ std::map<std::string, FuzzyThresholdByStructureType> m_FuzzyThreshold;
+
+ // Station's supports
+ void ExtractStationSupports();
+
+ // Station 8
+ // double m_DistanceMaxToAnteriorPartOfTheSpine;
+ double m_DiaphragmInferiorLimit;
+ double m_CarinaZ;
+ double m_OriginOfRightMiddleLobeBronchusZ;
+ double m_InjectedThresholdForS8;
+ MaskImagePointer m_Esophagus;
+ MaskImagePointType m_EsophagusDiltationForAnt;
+ MaskImagePointType m_EsophagusDiltationForRight;
+
+ void ExtractStation_8();
+ void ExtractStation_8_SetDefaultValues();
+ void ExtractStation_8_SI_Limits();
+ void ExtractStation_8_Ant_Limits();
+ void ExtractStation_8_Left_Sup_Limits();
+ void ExtractStation_8_Left_Inf_Limits();
+ void ExtractStation_8_Single_CCL_Limits();
+ void ExtractStation_8_Remove_Structures();
+
+ // Station 3P
+ void ExtractStation_3P();
+ void ExtractStation_3P_SetDefaultValues();
+ void ExtractStation_3P_SI_Limits();
+ void ExtractStation_3P_Remove_Structures();
+ void ExtractStation_3P_Ant_Limits();
+ void ExtractStation_3P_Post_Limits();
+ void ExtractStation_3P_LR_sup_Limits();
+ void ExtractStation_3P_LR_sup_Limits_2();
+ void ExtractStation_3P_LR_inf_Limits();
+
+ // Station 2RL
+ void ExtractStation_2RL();
+ void ExtractStation_2RL_SetDefaultValues();
+ void ExtractStation_2RL_SI_Limits();
+ void ExtractStation_2RL_Ant_Limits();
+ void ExtractStation_2RL_Ant_Limits2();
+ void ExtractStation_2RL_Post_Limits();
+ void ExtractStation_2RL_LR_Limits();
+ void ExtractStation_2RL_Remove_Structures();
+ void ExtractStation_2RL_SeparateRL();
+ vtkSmartPointer<vtkPolyData> Build3DMeshFrom2DContour(const std::vector<ImagePointType> & points);
+
+ // Station 3A
+ void ExtractStation_3A();
+ void ExtractStation_3A_SetDefaultValues();
+ void ExtractStation_3A_SI_Limits();
+ void ExtractStation_3A_Ant_Limits();
+ void ExtractStation_3A_Post_Limits();
+
+ // Station 7
+ void ExtractStation_7();
+ void ExtractStation_7_SetDefaultValues();
+ void ExtractStation_7_SI_Limits();
+ void ExtractStation_7_RL_Interior_Limits();
+
+
+ void ExtractStation_7_RL_Limits_OLD();
+ void ExtractStation_7_Posterior_Limits();
+ void ExtractStation_7_Remove_Structures();
+ bool m_S7_UseMostInferiorPartOnlyFlag;
+ MaskImagePointer m_Working_Trachea;
+ MaskImagePointer m_LeftBronchus;
+ MaskImagePointer m_RightBronchus;
+ typedef std::vector<MaskImageType::PointType> ListOfPointsType;
+ ListOfPointsType m_RightMostInLeftBronchus;
+ ListOfPointsType m_AntMostInLeftBronchus;
+ ListOfPointsType m_PostMostInLeftBronchus;
+ ListOfPointsType m_LeftMostInRightBronchus;
+ ListOfPointsType m_AntMostInRightBronchus;
+ ListOfPointsType m_PostMostInRightBronchus;
+
+ void FindExtremaPointsInBronchus(MaskImagePointer input,
+ int direction,
+ double distance_max_from_center_point,
+ ListOfPointsType & LR,
+ ListOfPointsType & Ant,
+ ListOfPointsType & Post);
+ // Station 4RL
+ void ExtractStation_4RL();
+ void ExtractStation_4RL_SI_Limits();
+ void ExtractStation_4RL_LR_Limits();
+ void ExtractStation_4RL_AP_Limits();
+ MaskImagePointer m_RightSupport;
+ MaskImagePointer m_LeftSupport;
+