- {
- if (str_PhotometricInterpretation == "YBR_FULL") { // Warning : YBR_FULL_422 acts as RGB (?!)
-
- // need to make RGB Pixels from Planes Y,cB,cR
- // see http://lestourtereaux.free.fr/papers/data/yuvrgb.pdf
- // for code optimisation
-
- int l = GetXSize()*GetYSize();
- int nbFrames = GetZSize();
-
- unsigned char * newDest = (unsigned char*) malloc(lgrTotale);
- unsigned char *x = newDest;
- unsigned char * a = (unsigned char *)destination;
- unsigned char * b = a + l;
- unsigned char * c = b + l;
-
- double R,G,B;
-
- // TODO : Replace by the 'well known'
- // integer computation counterpart
- for (int i=0;i<nbFrames;i++) {
- for (int j=0;j<l; j++) {
- R= 1.164 *(*a-16) + 1.596 *(*c -128) + 0.5;
- G= 1.164 *(*a-16) - 0.813 *(*c -128) - 0.392 *(*b -128) + 0.5;
- B= 1.164 *(*a-16) + 2.017 *(*b -128) + 0.5;
-
- if (R<0.0) R=0.0;
- if (G<0.0) G=0.0;
- if (B<0.0) B=0.0;
- if (R>255.0) R=255.0;
- if (G>255.0) G=255.0;
- if (B>255.0) B=255.0;
-
- *(x++) = (unsigned char)R;
- *(x++) = (unsigned char)G;
- *(x++) = (unsigned char)B;
- a++; b++; c++;
- }
- }
- memmove(destination,newDest,lgrTotale);
- free(newDest);
-
- } else {
-
- // need to make RGB Pixels from Planes R,G,B
-
- int l = GetXSize()*GetYSize();
- int nbFrames = GetZSize();
-
- char * newDest = (char*) malloc(lgrTotale);
- char *x = newDest;
- char * a = (char *)destination;
- char * b = a + l;
- char * c = b + l;
-
- // TODO :
- // any trick not to have to allocate temporary buffer is welcome ...
-
- for (int i=0;i<nbFrames;i++) {
- for (int j=0;j<l; j++) {
- *(x++) = *(a++);
- *(x++) = *(b++);
- *(x++) = *(c++);
- }
- }
- memmove(destination,newDest,lgrTotale);
- free(newDest);
- }
-
- break;
- }
-
- case 2:
- // from Lut R + Lut G + Lut B
-
- // we no longer use gdcmHeader::GetLUTRGB
- // since a lot of images have strange info
- // in the Lookup Table Descriptors (0028,1101),...
- {
- unsigned char * newDest = (unsigned char*) malloc(lgrTotale);
- unsigned char * a = (unsigned char *)destination;
-
- unsigned char *lutR =(unsigned char *)GetPubElValVoidAreaByNumber(0x0028,0x1201);
- unsigned char *lutG =(unsigned char *)GetPubElValVoidAreaByNumber(0x0028,0x1202);
- unsigned char *lutB =(unsigned char *)GetPubElValVoidAreaByNumber(0x0028,0x1203);
-
- if (lutR && lutG && lutB ) { // need to make RGB Pixels
- // from grey Pixels
- // and Lut R,Lut G,Lut B
-
- unsigned char * newDest = (unsigned char*) malloc(lgrTotale);
- int l = lgrTotale/3;
- memmove(newDest, destination, l);// move Gray pixels to temp area
-
- int j;
- // See PS 3.3-2003 C.11.1.1.2 p 619
- //
- int mult;
- if ( GetLUTNbits()==16 && nb==8) mult=2; // See PS 3.3
- else mult=1;
-
- // if we get a black image, let's just remove the '+1'
- // and check again
- // if it works, we shall have to check the 3 Palettes
- // to see which byte is ==0 (first one, or second one)
-
- for (int i=0;i<l; i++) {
- j=newDest[i]*mult +1;
- *a++ = lutR[j];
- *a++ = lutG[j];
- *a++ = lutB[j];
- }
-
- free(newDest);
-
- } else { // need to make RGB Pixels (?)
- // from grey Pixels (?!)
- // and Gray Lut (!?!)
- unsigned char *lutGray =(unsigned char *)GetPubElValVoidAreaByNumber(0x0028,0x1200);
- // Well . I'll wait till I find such an image
- }
- break;
+/**
+ * \brief Check whether the pixels are signed or UNsigned data.
+ * \warning The method defaults to false (UNsigned) when information is Missing.
+ * The responsability of checking this value is left to the caller.
+ * @return True when signed, false when UNsigned
+ */
+bool File::IsSignedPixelData()
+{
+ std::string strSize = GetEntryValue( 0x0028, 0x0103 );
+ if ( strSize == GDCM_UNFOUND )
+ {
+ gdcmWarningMacro( "(0028,0103) is supposed to be mandatory");
+ return false;
+ }
+ int sign = atoi( strSize.c_str() );
+ if ( sign == 0 )
+ {
+ return false;
+ }
+ return true;
+}
+
+/**
+ * \brief Check whether this a monochrome picture or not by accessing
+ * the "Photometric Interpretation" tag ( 0x0028, 0x0004 ).
+ * @return true when "MONOCHROME1" or "MONOCHROME2". False otherwise.
+ */
+bool File::IsMonochrome()
+{
+ const std::string &PhotometricInterp = GetEntryValue( 0x0028, 0x0004 );
+ if ( Util::DicomStringEqual(PhotometricInterp, "MONOCHROME1")
+ || Util::DicomStringEqual(PhotometricInterp, "MONOCHROME2") )
+ {
+ return true;
+ }
+ if ( PhotometricInterp == GDCM_UNFOUND )
+ {
+ gdcmWarningMacro( "Not found : Photometric Interpretation (0028,0004)");
+ }
+ return false;
+}
+
+/**
+ * \brief Check whether this a "PALETTE COLOR" picture or not by accessing
+ * the "Photometric Interpretation" tag ( 0x0028, 0x0004 ).
+ * @return true when "PALETTE COLOR". False otherwise.
+ */
+bool File::IsPaletteColor()
+{
+ std::string PhotometricInterp = GetEntryValue( 0x0028, 0x0004 );
+ if ( PhotometricInterp == "PALETTE COLOR " )
+ {
+ return true;
+ }
+ if ( PhotometricInterp == GDCM_UNFOUND )
+ {
+ gdcmWarningMacro( "Not found : Palette color (0028,0004)");
+ }
+ return false;
+}
+
+/**
+ * \brief Check whether this a "YBR_FULL" color picture or not by accessing
+ * the "Photometric Interpretation" tag ( 0x0028, 0x0004 ).
+ * @return true when "YBR_FULL". False otherwise.
+ */
+bool File::IsYBRFull()
+{
+ std::string PhotometricInterp = GetEntryValue( 0x0028, 0x0004 );
+ if ( PhotometricInterp == "YBR_FULL" )
+ {
+ return true;
+ }
+ if ( PhotometricInterp == GDCM_UNFOUND )
+ {
+ gdcmWarningMacro( "Not found : YBR Full (0028,0004)");
+ }
+ return false;
+}
+
+/**
+ * \brief tells us if LUT are used
+ * \warning Right now, 'Segmented xxx Palette Color Lookup Table Data'
+ * are NOT considered as LUT, since nobody knows
+ * how to deal with them
+ * Please warn me if you know sbdy that *does* know ... jprx
+ * @return true if LUT Descriptors and LUT Tables were found
+ */
+bool File::HasLUT()
+{
+ // Check the presence of the LUT Descriptors, and LUT Tables
+ // LutDescriptorRed
+ if ( !GetDocEntry(0x0028,0x1101) )
+ {
+ return false;
+ }
+ // LutDescriptorGreen
+ if ( !GetDocEntry(0x0028,0x1102) )
+ {
+ return false;
+ }
+ // LutDescriptorBlue
+ if ( !GetDocEntry(0x0028,0x1103) )
+ {
+ return false;
+ }
+ // Red Palette Color Lookup Table Data
+ if ( !GetDocEntry(0x0028,0x1201) )
+ {
+ return false;
+ }
+ // Green Palette Color Lookup Table Data
+ if ( !GetDocEntry(0x0028,0x1202) )
+ {
+ return false;
+ }
+ // Blue Palette Color Lookup Table Data
+ if ( !GetDocEntry(0x0028,0x1203) )
+ {
+ return false;
+ }
+
+ // FIXME : (0x0028,0x3006) : LUT Data (CTX dependent)
+ // NOT taken into account, but we don't know how to use it ...
+ return true;
+}
+
+/**
+ * \brief gets the info from 0028,1101 : Lookup Table Desc-Red
+ * else 0
+ * @return Lookup Table number of Bits , 0 by default
+ * when (0028,0004),Photometric Interpretation = [PALETTE COLOR ]
+ * @ return bit number of each LUT item
+ */
+int File::GetLUTNbits()
+{
+ std::vector<std::string> tokens;
+ int lutNbits;
+
+ //Just hope Lookup Table Desc-Red = Lookup Table Desc-Red
+ // = Lookup Table Desc-Blue
+ // Consistency already checked in GetLUTLength
+ std::string lutDescription = GetEntryValue(0x0028,0x1101);
+ if ( lutDescription == GDCM_UNFOUND )
+ {
+ return 0;
+ }
+
+ tokens.clear(); // clean any previous value
+ Util::Tokenize ( lutDescription, tokens, "\\" );
+ //LutLength=atoi(tokens[0].c_str());
+ //LutDepth=atoi(tokens[1].c_str());
+
+ lutNbits = atoi( tokens[2].c_str() );
+ tokens.clear();
+
+ return lutNbits;
+}
+
+/**
+ *\brief gets the info from 0028,1052 : Rescale Intercept
+ * @return Rescale Intercept
+ */
+float File::GetRescaleIntercept()
+{
+ float resInter = 0.;
+ /// 0028 1052 DS IMG Rescale Intercept
+ const std::string &strRescInter = GetEntryValue(0x0028,0x1052);
+ if ( strRescInter != GDCM_UNFOUND )
+ {
+ if( sscanf( strRescInter.c_str(), "%f", &resInter) != 1 )
+ {
+ // bug in the element 0x0028,0x1052
+ gdcmWarningMacro( "Rescale Intercept (0028,1052) is empty." );