+ ADD_EXECUTABLE(clitkVectorArithm clitkVectorArithm.cxx)
+ TARGET_LINK_LIBRARIES(clitkVectorArithm clitkVectorArithmLib clitkCommon )
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorArithm)
+
+ WRAP_GGO(clitkUnsharpMask_GGO_C clitkUnsharpMask.ggo)
+ ADD_EXECUTABLE(clitkUnsharpMask clitkUnsharpMask.cxx ${clitkUnsharpMask_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkUnsharpMask clitkCommon )
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkUnsharpMask)
+
+ WRAP_GGO(clitkFooImage_GGO_C clitkFooImage.ggo)
+ ADD_EXECUTABLE(clitkFooImage clitkFooImage.cxx ${clitkFooImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkFooImage clitkCommon )
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFooImage)
+
+ WRAP_GGO(clitkMedianImageFilter_GGO_C clitkMedianImageFilter.ggo)
+ ADD_EXECUTABLE(clitkMedianImageFilter clitkMedianImageFilter.cxx ${clitkMedianImageFilter_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMedianImageFilter clitkMedianImageFilterLib clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMedianImageFilter)
+
+ ADD_EXECUTABLE(clitkResampleImage clitkResampleImage.cxx)
+ TARGET_LINK_LIBRARIES(clitkResampleImage clitkResampleImageLib clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkResampleImage)
+
+ WRAP_GGO(clitkMinMaxMask_GGO_C clitkMinMaxMask.ggo)
+ ADD_EXECUTABLE(clitkMinMaxMask clitkMinMaxMask.cxx ${clitkMinMaxMask_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMinMaxMask clitkCommon )
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMinMaxMask)
+
+ WRAP_GGO(clitkAutoCrop_GGO_C clitkAutoCrop.ggo)
+ ADD_EXECUTABLE(clitkAutoCrop clitkAutoCrop.cxx ${clitkAutoCrop_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkAutoCrop clitkCommon )
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAutoCrop)
+
+ WRAP_GGO(clitkDicomRTStruct2Image_GGO_C clitkDicomRTStruct2Image.ggo)
+ ADD_EXECUTABLE(clitkDicomRTStruct2Image clitkDicomRTStruct2Image.cxx ${clitkDicomRTStruct2Image_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkDicomRTStruct2Image clitkDicomRTStruct)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTStruct2Image)
+
+ IF(CLITK_USE_SYSTEM_GDCM)
+ WRAP_GGO(clitkImage2DicomRTStruct_GGO_C clitkImage2DicomRTStruct.ggo)
+ ADD_EXECUTABLE(clitkImage2DicomRTStruct clitkImage2DicomRTStruct.cxx ${clitkImage2DicomRTStruct_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkImage2DicomRTStruct clitkDicomRTStruct)
+ ENDIF()
+
+ WRAP_GGO(clitkComposeVF_GGO_C clitkComposeVF.ggo)
+ ADD_EXECUTABLE(clitkComposeVF clitkComposeVFGenericFilter.cxx clitkComposeVF.cxx ${clitkComposeVF_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkComposeVF clitkCommon )
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkComposeVF)
+
+ WRAP_GGO(clitkMergeSequence_GGO_C clitkMergeSequence.ggo)
+ ADD_EXECUTABLE(clitkMergeSequence clitkMergeSequence.cxx clitkMergeSequenceGenericFilter.cxx ${clitkMergeSequence_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMergeSequence clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeSequence)
+
+ WRAP_GGO(clitkBackProjectImage_GGO_C clitkBackProjectImage.ggo)
+ ADD_EXECUTABLE(clitkBackProjectImage clitkBackProjectImage.cxx clitkBackProjectImageGenericFilter.cxx ${clitkBackProjectImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkBackProjectImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBackProjectImage)
+
+ ADD_EXECUTABLE(clitkCropImage clitkCropImage.cxx ${clitkCropImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkCropImage clitkCropImageLib clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCropImage)
+
+ # WRAP_GGO(clitkExtractSlice_GGO_C clitkExtractSlice.ggo)
+ # ADD_EXECUTABLE(clitkExtractSlice clitkExtractSlice.cxx clitkExtractSliceGenericFilter.cxx ${clitkExtractSlice_GGO_C})
+ # TARGET_LINK_LIBRARIES(clitkExtractSlice clitkCommon)
+ #SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkExtractSlice)
+
+ WRAP_GGO(clitkFlipImage_GGO_C clitkFlipImage.ggo)
+ ADD_EXECUTABLE(clitkFlipImage clitkFlipImage.cxx clitkFlipImageGenericFilter.cxx ${clitkFlipImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkFlipImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkFlipImage)
+
+ WRAP_GGO(clitkMirrorPadImage_GGO_C clitkMirrorPadImage.ggo)
+ ADD_EXECUTABLE(clitkMirrorPadImage clitkMirrorPadImage.cxx clitkMirrorPadImageGenericFilter.cxx ${clitkMirrorPadImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMirrorPadImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMirrorPadImage)
+
+ WRAP_GGO(clitkImageMoment_GGO_C clitkImageMoment.ggo)
+ ADD_EXECUTABLE(clitkImageMoment clitkImageMoment.cxx clitkImageMomentGenericFilter.cxx ${clitkImageMoment_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkImageMoment clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageMoment)
+
+ WRAP_GGO(clitkImageStatistics_GGO_C clitkImageStatistics.ggo)
+ ADD_EXECUTABLE(clitkImageStatistics clitkImageStatistics.cxx clitkImageStatisticsGenericFilter.cxx ${clitkImageStatistics_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkImageStatistics clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageStatistics)
+
+ WRAP_GGO(clitkVFConvert_GGO_C clitkVFConvert.ggo)
+ ADD_EXECUTABLE(clitkVFConvert clitkVFConvert.cxx clitkVFConvertGenericFilter.cxx ${clitkVFConvert_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkVFConvert clitkCommon )
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVFConvert)
+
+ WRAP_GGO(clitkImageToVectorImage_GGO_C clitkImageToVectorImage.ggo)
+ ADD_EXECUTABLE(clitkImageToVectorImage clitkImageToVectorImage.cxx clitkImageToVectorImageGenericFilter.cxx ${clitkImageToVectorImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkImageToVectorImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageToVectorImage)
+
+ WRAP_GGO(clitkVectorImageToImage_GGO_C clitkVectorImageToImage.ggo)
+ ADD_EXECUTABLE(clitkVectorImageToImage clitkVectorImageToImage.cxx clitkVectorImageToImageGenericFilter.cxx ${clitkVectorImageToImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkVectorImageToImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkVectorImageToImage)
+
+ ADD_EXECUTABLE(clitkMIP clitkMIP.cxx clitkMIPGenericFilter.cxx)
+ TARGET_LINK_LIBRARIES(clitkMIP clitkMIPLib clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMIP)
+
+ WRAP_GGO(clitkTransformLandmarks_GGO_C clitkTransformLandmarks.ggo)
+ ADD_EXECUTABLE(clitkTransformLandmarks clitkTransformLandmarks.cxx ${clitkTransformLandmarks_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkTransformLandmarks clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkTransformLandmarks)
+
+ WRAP_GGO(clitkDice_GGO_C clitkDice.ggo)
+ ADD_EXECUTABLE(clitkDice clitkDice.cxx ${clitkDice_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkDice clitkSegmentationGgoLib clitkCommon ${ITK_LIBRARIES} )
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDice)
+
+ WRAP_GGO(clitkMaskLandmarks_GGO_C clitkMaskLandmarks.ggo)
+ ADD_EXECUTABLE(clitkMaskLandmarks clitkMaskLandmarks.cxx ${clitkMaskLandmarks_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMaskLandmarks clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMaskLandmarks)
+
+ WRAP_GGO(clitkJacobianImage_GGO_C clitkJacobianImage.ggo)
+ ADD_EXECUTABLE(clitkJacobianImage clitkJacobianImage.cxx clitkJacobianImageGenericFilter.cxx ${clitkJacobianImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkJacobianImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkJacobianImage)
+
+ WRAP_GGO(clitkPadImage_GGO_C clitkPadImage.ggo)
+ ADD_EXECUTABLE(clitkPadImage clitkPadImage.cxx clitkPadImageGenericFilter.cxx ${clitkPadImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkPadImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkPadImage)
+
+ WRAP_GGO(clitkCatImage_GGO_C clitkCatImage.ggo)
+ ADD_EXECUTABLE(clitkCatImage clitkCatImage.cxx ${clitkCatImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkCatImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkCatImage)
+
+ WRAP_GGO(clitkAnisotropicDiffusion_GGO_C clitkAnisotropicDiffusion.ggo)
+ ADD_EXECUTABLE(clitkAnisotropicDiffusion clitkAnisotropicDiffusion.cxx
+ clitkAnisotropicDiffusionGenericFilter.cxx
+ ${clitkAnisotropicDiffusion_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkAnisotropicDiffusion clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkAnisotropicDiffusion)
+
+ WRAP_GGO(clitkChangeImageInfo_GGO_C clitkChangeImageInfo.ggo)
+ ADD_EXECUTABLE(clitkChangeImageInfo clitkChangeImageInfo.cxx
+ clitkChangeImageInfoGenericFilter.cxx
+ ${clitkChangeImageInfo_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkChangeImageInfo clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkChangeImageInfo)
+
+ WRAP_GGO(clitkMergeAsciiDoseActor_GGO_C clitkMergeAsciiDoseActor.ggo)
+ ADD_EXECUTABLE(clitkMergeAsciiDoseActor clitkMergeAsciiDoseActor.cxx ${clitkMergeAsciiDoseActor_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMergeAsciiDoseActor ITKCommon clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeAsciiDoseActor)
+
+ WRAP_GGO(clitkImageUncertainty_GGO_C clitkImageUncertainty.ggo)
+ ADD_EXECUTABLE(clitkImageUncertainty clitkImageUncertainty.cxx clitkImageUncertainty_ggo.c)
+ TARGET_LINK_LIBRARIES(clitkImageUncertainty clitkCommon ${ITK_LIBRARIES})
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkImageUncertainty)
+
+ #=========================================================
+ option(CLITK_USE_ROOT "Build experimental tools using root" OFF)
+ if (CLITK_USE_ROOT)
+ FIND_PACKAGE(ROOT REQUIRED)
+ if(ROOT_FOUND)
+ MESSAGE(STATUS "ROOT found : ${ROOT_LIBRARY_DIR} ${ROOT_INCLUDE_DIR} ${ROOT_LIBRARIES}")
+ ELSE(ROOT_FOUND)
+ MESSAGE(FATAL_ERROR
+ "Cannot build without ROOT. Please set ROOTSYS environement variable.")
+ endif(ROOT_FOUND)
+ INCLUDE_DIRECTORIES(${ROOT_INCLUDE_DIR})
+ LINK_DIRECTORIES(${ROOT_LIBRARY_DIR})
+ WRAP_GGO(clitkMergeRootFiles_GGO_C clitkMergeRootFiles.ggo)
+ ADD_EXECUTABLE(clitkMergeRootFiles clitkMergeRootFiles.cxx GateMergeManager.cc ${clitkMergeRootFiles_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMergeRootFiles ${ROOT_LIBRARIES})
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMergeRootFiles)
+ endif()
+ #=========================================================
+
+
+ #=========================================================
+ IF(CLITK_EXPERIMENTAL)
+ WRAP_GGO(clitkBinaryImageToMesh_GGO_C clitkBinaryImageToMesh.ggo)
+ ADD_EXECUTABLE(clitkBinaryImageToMesh clitkBinaryImageToMesh.cxx ${clitkBinaryImageToMesh_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkBinaryImageToMesh clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkBinaryImageToMesh)
+
+ WRAP_GGO(clitkMeshToBinaryImage_GGO_C clitkMeshToBinaryImage.ggo)
+ ADD_EXECUTABLE(clitkMeshToBinaryImage clitkMeshToBinaryImage.cxx ${clitkMeshToBinaryImage_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMeshToBinaryImage clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshToBinaryImage)
+
+ WRAP_GGO(clitkMeshViewer_GGO_C clitkMeshViewer.ggo)
+ ADD_EXECUTABLE(clitkMeshViewer clitkMeshViewer.cxx ${clitkMeshViewer_GGO_C})
+ TARGET_LINK_LIBRARIES(clitkMeshViewer clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkMeshViewer)
+ ENDIF(CLITK_EXPERIMENTAL)
+ #=========================================================
+
+
+ #=========================================================
+ IF(ITK_VERSION_MAJOR VERSION_LESS 4)
+ MESSAGE("clitkDicomRTPlan2Gate is not compatible with GDCM<2 (ITK<4). It will not be built.")
+ ELSE(ITK_VERSION_MAJOR VERSION_LESS 4)
+ WRAP_GGO(clitkDicomRTPlan2Gate_GGO_C clitkDicomRTPlan2Gate.ggo)
+ ADD_EXECUTABLE(clitkDicomRTPlan2Gate clitkDicomRTPlan2Gate.cxx clitkDicomRTPlan2Gate_ggo.c)
+ TARGET_LINK_LIBRARIES(clitkDicomRTPlan2Gate clitkCommon)
+ SET(TOOLS_INSTALL ${TOOLS_INSTALL} clitkDicomRTPlan2Gate)
+ ENDIF(ITK_VERSION_MAJOR VERSION_LESS 4)
+ #=========================================================
+
+
+ INSTALL (TARGETS ${TOOLS_INSTALL} DESTINATION bin PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
+
+ENDIF(CLITK_BUILD_TOOLS)