Add VTK 8.1.1 and ITK 5 beta

[clitk.git] / tools / clitkAffineTransform.ggo

diff --git a/tools/clitkAffineTransform.ggo b/tools/clitkAffineTransform.ggo
index ba035367e9424b5ed1779b10c3ce4326ba774cd7..1d4c43ad85a4370e7d1b9b3a24497f4f150129d5 100644 (file)
--- a/tools/clitkAffineTransform.ggo
+++ b/tools/clitkAffineTransform.ggo
@@ -3,29 +3,36 @@ package "clitkAffineTransform"
 version "1.0"
 purpose "Resample with or without affine transform of 2D, 3D, 4D images or vector fields"
 
 version "1.0"
 purpose "Resample with or without affine transform of 2D, 3D, 4D images or vector fields"
 

-option "config"                -       "Config file"                     string        no
-option "verbose"       v       "Verbose"                         flag          off
+option "config"                - "Config file"                   string        no
+option "verbose"       v "Verbose"                       flag          off

 
 section "I/O"
 
 section "I/O"

-option "input"         i       "Input image filename"            string        yes
-option "output"        o       "Output image filename"           string        yes
-option "like"          l       "Resample output this image (size, spacing,origin)"     string  no
+option "input"         i "Input image filename"                                          string yes
+option "output"        o "Output image filename"                                         string yes
+option "like"          l "Resample output this image (size, spacing, origin, direction)" string no
+option "transform_grid" - "Apply affine transform to input grid for output's"             flag   off

 
 section "Options"
 
 section "Options"

-option "size"          -       "New output size if different from input"       int     no      multiple
-option "spacing"       -       "New output spacing if different from input"    double  no      multiple
-option "origin"                -       "New output origin if different from input"     double  no      multiple
-option "matrix"                m       "Affine matrix (homogene) filename"             string  no
-option "pad"           -       "Edge padding value"                            double  no      default="0.0"
+option "size"          - "New output size if different from input"     int     no      multiple
+option "spacing"       - "New output spacing if different from input"  double  no      multiple
+option "spacinglike"   - "New output spacing like this image"          string  no
+option "origin"                - "New output origin if different from input"   double  no      multiple
+option "direction"     - "New output direction if different from input" double no      multiple
+option "matrix"                m "Affine matrix (homogene) filename"           string  no
+option "elastix"       e "Read EulerTransform from elastix output file (combine if multiple)"  string  no
+option "rotate"                r "Rotation to apply (radians)"                 double  no      multiple
+option "translate"     t "Translation to apply (mm)"                   double  no      multiple
+option "pad"           - "Edge padding value"                          double  no      default="0.0"
+option "adaptive"              - "Adapt the size, spacing or the origin when one of the previous tag is on (use previous clitkResampleImage)" flag off

 
 section "Interpolation"
 
 section "Interpolation"

-option "interp"                -       "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"      int     no  default="1"
-option "interpOrder"   -       "Order if BLUT or BSpline (0-5)"                        int     no  default="3"
-option "interpSF"      -       "Sampling factor if BLUT"                               int     no  default="20"
-option "interpVF"      -       "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"      int     no  default="1"
-option "interpVFOrder" -       "Order if BLUT or BSpline (0-5)"                        int     no  default="3"
-option "interpVFSF"    -       "Sampling factor if BLUT"                               int     no  default="20"
-
-
-
-
+option "interp"                - "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"    int     no  default="1"
+option "interpOrder"   - "Order if BLUT or BSpline (0-5)"                      int     no  default="3"
+option "interpSF"      - "Sampling factor if BLUT"                             int     no  default="20"
+option "interpVF"      - "Interpolation: 0=NN, 1=Linear, 2=BSpline, 3=BLUT"    int     no  default="1"
+option "interpVFOrder" - "Order if BLUT or BSpline (0-5)"                      int     no  default="3"
+option "interpVFSF"    - "Sampling factor if BLUT"                             int     no  default="20"
+
+section "Gaussian filtering"
+option "gauss" g "Apply gaussian filter before (sigma in mm) (default=0.0)" double no multiple
+option "autogauss" - "Apply gaussian filter before with auto sigma when downsampling (default=off)" flag off
\ No newline at end of file