+ // check if file UIDs will be be preserved
+ bool useInputFileUID = true;
+ if (m_ArgsInfo.newSeriesUID_flag || m_ArgsInfo.newStudyUID_flag || seriesUIDGiven || studyUIDGiven) {
+ useInputFileUID = false;
+ }
+ else {
+#if GDCM_MAJOR_VERSION < 2
+ gdcmIO->SetKeepOriginalUID(true);
+#endif
+ namesGenerator->SetOutputDirectory( m_ArgsInfo.outputDir_arg );
+ filenames_out = namesGenerator->GetOutputFileNames();
+ }
+
+ filenames_out.resize(numberOfFilenames);
+
+ time_t t;
+ t = time(&t);
+ struct tm* instanceDateTimeTm = localtime(&t);
+ char datetime[16];
+ strftime(datetime, 16, "%Y%m%d", instanceDateTimeTm);
+ std::ostringstream instanceDate;
+ instanceDate << datetime;
+ std::ostringstream instanceTime;
+ strftime(datetime, 16, "%H%M%S", instanceDateTimeTm);
+ instanceTime << datetime;
+
+ // update output dicom keys/tags
+ for(unsigned int fni = 0; fni<numberOfFilenames; fni++) {
+ for (unsigned int i = 0; i < numberOfKeysGiven; i++) {
+ std::string entryId(m_ArgsInfo.key_arg[i] );
+ std::string value( m_ArgsInfo.tag_arg[i] );
+
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), entryId, value );
+ }
+
+ // series UID
+ if (!seriesUIDGiven) {
+ if (m_ArgsInfo.newSeriesUID_flag) {
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), seriesUIDkey, seriesUID );
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), frameOfReferenceUIDKey, frameOfReferenceUID );
+ }
+ }
+
+ // study UID
+ if (!studyUIDGiven) {
+ if (m_ArgsInfo.newStudyUID_flag)
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), studyUIDKey, studyUID );
+ }
+
+ // study description
+ if (studyUIDGiven || m_ArgsInfo.newStudyUID_flag) {
+ if (!studyIDGiven)
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), studyIDKey,itksys::SystemTools::GetFilenameName( m_ArgsInfo.outputDir_arg ));
+ if (!studyDescriptionGiven)
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), studyDescriptionKey,itksys::SystemTools::GetFilenameName( m_ArgsInfo.outputDir_arg ));
+
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), "0008|0020", instanceDate.str() );
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), "0008|0030", instanceTime.str() );
+ }
+
+ // series description/number
+ if (seriesUIDGiven || m_ArgsInfo.newSeriesUID_flag) {
+ if (!seriesDescriptionGiven)
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), seriesDescriptionKey, itksys::SystemTools::GetFilenameName(m_ArgsInfo.outputDir_arg) );
+ if (!seriesNumberGiven)
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), seriesNumberKey, itksys::SystemTools::GetFilenameName(m_ArgsInfo.outputDir_arg) );
+
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), "0008|0012", instanceDate.str() );
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), "0008|0013", instanceTime.str() );
+ }
+
+ // file UIDs are recreated for new studies or series
+ if (!useInputFileUID)
+ {
+ std::string fileUID;
+#if GDCM_MAJOR_VERSION >= 2
+ gdcm::UIDGenerator fid;
+ fileUID = fid.Generate();
+#else
+ fileUID = gdcm::Util::CreateUniqueUID( gdcmIO->GetUIDPrefix());
+#endif
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), "0008|0018", fileUID );
+ itk::EncapsulateMetaData<std::string>( *((*dictionary)[fni]), "0002|0003", fileUID );
+
+ filenames_out[fni] = itksys::SystemTools::CollapseFullPath(fileUID.c_str(), m_ArgsInfo.outputDir_arg) + std::string(".dcm");
+ }
+ }
+