- window.LoadImages(filenames,IMAGE);
- for (std::vector<std::pair<int ,std::string> >::iterator i=overlays.begin();
- i!=overlays.end();i++)
- window.AddOverlayImage((*i).first,(*i).second.c_str());
- for (std::vector<std::pair<int ,std::string> >::iterator i=vector_fields.begin();
- i!=vector_fields.end();i++)
- window.AddField((*i).second.c_str(), (*i).first);
-
+ if (current=="--vf") {
+ if (!n_image_loaded) load_image_first_error();
+ window.AddField(argv[i+1],n_image_loaded-1);
+ i++; //skip vf name
+ } else if (current=="--overlay") {
+ if (!n_image_loaded) load_image_first_error();
+ window.AddOverlayImage(n_image_loaded-1,argv[i+1]);
+ i++; //skip overlay name
+ } else if (current=="--roi") {
+ if (!n_image_loaded) load_image_first_error();
+ window.AddROI(n_image_loaded-1,argv[i+1]);
+ i++; //skip roi name
+ } else if (current=="--fusion") {
+ if (!n_image_loaded) load_image_first_error();
+ window.AddFusionImage(n_image_loaded-1,argv[i+1]);
+ i++; //skip fusion name
+ } else if (current == "--sequence") {
+ n_image_loaded++; //count only one for the sequence
+ parse_mode=P_SEQUENCE;
+ } else if (current == "--window") {
+ parse_mode=P_WINDOW;
+ } else if (current == "--level") {
+ parse_mode=P_LEVEL;
+ } else if (current == "--log") {
+ std::string log_dir = QDir::tempPath().toStdString() + std::string("/vv-log");
+
+ if(itksys::SystemTools::FileExists(log_dir.c_str()) &&
+ !itksys::SystemTools::FileIsDirectory(log_dir.c_str())) {
+ std::cerr << "Error creating log directory, file exists and is not a directory." << std::endl;
+ exit(1);
+ } else if(!itksys::SystemTools::MakeDirectory(log_dir.c_str())) {
+ std::cerr << "Error creating log directory." << std::endl;
+ exit(1);
+ }
+
+ std::string log_file = log_dir + "/" + create_timed_string() + ".log";
+
+ itk::SmartPointer<itk::FileOutputWindow> itk_log = itk::FileOutputWindow::New();
+ itk_log->SetFileName(log_file.c_str());
+ itk_log->FlushOn();
+ itk_log->AppendOn();
+ itk::OutputWindow::SetInstance(itk_log);
+
+ vtkSmartPointer<vtkFileOutputWindow> vtk_log = vtkFileOutputWindow::New();
+ vtk_log->SetFileName(log_file.c_str());
+ vtk_log->FlushOn();
+ vtk_log->AppendOn();
+ vtkOutputWindow::SetInstance(vtk_log);
+ }
+ } else if (parse_mode == P_SEQUENCE) {
+ sequence_filenames.push_back(current);
+ } else if (parse_mode == P_WINDOW) {
+ win=current;
+ parse_mode=P_NORMAL;
+ } else if (parse_mode == P_LEVEL) {
+ lev=current;
+ parse_mode=P_NORMAL;
+ } else {
+ std::vector<std::string> image;
+ image.push_back(current);
+ window.LoadImages(image, vvImageReader::IMAGE);
+ n_image_loaded++;
+ }
+ }
+ if (parse_mode == P_SEQUENCE) { //Finish any current sequence
+ window.LoadImages(sequence_filenames, vvImageReader::MERGEDWITHTIME);
+ sequence_filenames.clear();
+ parse_mode=P_NORMAL;