Program: gdcm
Module: $RCSfile: AnonymizeNoLoad.cxx,v $
Language: C++
- Date: $Date: 2005/06/14 09:09:50 $
- Version: $Revision: 1.2 $
+ Date: $Date: 2007/06/06 13:03:57 $
+ Version: $Revision: 1.21 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include "gdcmFileHelper.h"
#include "gdcmCommon.h"
#include "gdcmDebug.h"
+#include "gdcmDirList.h"
#include "gdcmArgMgr.h"
int main(int argc, char *argv[])
{
START_USAGE(usage)
- " \n AnonymizeNoLoad :\n",
- " Anonymize a gdcm-readable Dicom image even if pixels aren't gdcm readable",
- " Warning : Warning : the image is overwritten",
- " to preserve image integrity, use a copy.",
- " usage: AnonymizeNoLoad filein=inputFileName fileout=[debug] ",
- " debug : user wants to run the program in 'debug mode' ",
+ "\n AnonymizeNoLoad :\n ",
+ "Anonymize a gdcm-parsable Dicom image even if pixels aren't gdcm readable ",
+ " Warning : the image is OVERWRITTEN ",
+ " to preserve image integrity, use a copy. ",
+ "usage: AnonymizeNoLoad {filein=inputFileName|dirin=inputDirectoryName} ",
+ " [rubout=listOfElementsToRubOut] ",
+ " [ { [noshadowseq] | [noshadow][noseq] } ] [debug] ",
+ " inputFileName : Name of the (single) file user wants to anonymize ",
+ " inputDirectoryName : user wants to anonymize *all* the files ",
+ " within the (single Patient!) directory ",
+ " listOfElementsToRubOut : group-elem,g2-e2,... (in hexa, no space) ",
+ " of extra Elements to rub out ",
+ " noshadowseq: user doesn't want to load Private Sequences ",
+ " noshadow : user doesn't want to load Private groups (odd number) ",
+ " noseq : user doesn't want to load Sequences ",
+ " debug : developper wants to run the program in 'debug mode' ",
FINISH_USAGE
- // ----- Initialize Arguments Manager ------
- gdcm::ArgMgr *am = new gdcm::ArgMgr(argc, argv);
+ // ----- Initialize Arguments Manager ------
- if (am->ArgMgrDefined("usage"))
+ GDCM_NAME_SPACE::ArgMgr *am = new GDCM_NAME_SPACE::ArgMgr(argc, argv);
+
+ if (am->ArgMgrDefined("usage") || argc == 1)
{
am->ArgMgrUsage(usage); // Display 'usage'
delete am;
}
if (am->ArgMgrDefined("debug"))
- gdcm::Debug::DebugOn();
-
- char *fileName = am->ArgMgrWantString("filein",usage);
+ GDCM_NAME_SPACE::Debug::DebugOn();
- int loadMode;
- if ( am->ArgMgrDefined("noshadow") && am->ArgMgrDefined("noseq") )
- loadMode = NO_SEQ | NO_SHADOW;
- else if ( am->ArgMgrDefined("noshadow") )
- loadMode = NO_SHADOW;
- else if ( am->ArgMgrDefined("noseq") )
- loadMode = NO_SEQ;
- else
- loadMode = 0;
+ const char *fileName = am->ArgMgrGetString("filein");
+ const char *dirName = am->ArgMgrGetString("dirin");
- delete am; // we don't need Argument Manager any longer
+ if ( (fileName == 0 && dirName == 0)
+ ||
+ (fileName != 0 && dirName != 0) )
+ {
+ std::cout <<std::endl
+ << "Either 'filein=' or 'dirin=' must be present;"
+ << std::endl << "Not both" << std::endl;
+ am->ArgMgrUsage(usage); // Display 'usage'
+ delete am;
+ return 0;
+ }
+
+ int loadMode = GDCM_NAME_SPACE::LD_ALL;
+ if ( am->ArgMgrDefined("noshadowseq") )
+ loadMode |= GDCM_NAME_SPACE::LD_NOSHADOWSEQ;
+ else
+ {
+ if ( am->ArgMgrDefined("noshadow") )
+ loadMode |= GDCM_NAME_SPACE::LD_NOSHADOW;
+ if ( am->ArgMgrDefined("noseq") )
+ loadMode |= GDCM_NAME_SPACE::LD_NOSEQ;
+ }
- // ============================================================
- // Parse the input file.
- // ============================================================
+ int rubOutNb;
+ uint16_t *elemsToRubOut = am->ArgMgrGetXInt16Enum("rubout", &rubOutNb);
- gdcm::File *f1;
- f1 = new gdcm::File( );
- f1->SetLoadMode(loadMode);
- int res = f1->Load(fileName);
+ /* if unused Param we give up */
+ if ( am->ArgMgrPrintUnusedLabels() )
+ {
+ am->ArgMgrUsage(usage);
+ delete am;
+ return 0;
+ }
+
+ delete am; // ------ we don't need Arguments Manager any longer ------
- // gdcm::File::IsReadable() is no usable here, because we deal with
- // any kind of gdcm::Readable *document*
- // not only gdcm::File (as opposed to gdcm::DicomDir)
- if ( !res )
+ GDCM_NAME_SPACE::File *f;
+ if ( fileName != 0 ) // ====== Deal with a single file ======
{
- std::cout <<std::endl
- << "Sorry, " << fileName <<" not a gdcm-readable "
- << "DICOM / ACR Document"
- << std::endl;
- delete f1;
- return 1;
+
+ //
+ // Parse the input file.
+ //
+ f = GDCM_NAME_SPACE::File::New( );
+ f->SetLoadMode(loadMode);
+ f->SetFileName( fileName );
+
+ // GDCM_NAME_SPACE::File::IsReadable() is no usable here, because we deal with
+ // any kind of GDCM_NAME_SPACE::Readable *document*
+ // not only GDCM_NAME_SPACE::File (as opposed to GDCM_NAME_SPACE::DicomDir)
+ if ( !f->Load() )
+ {
+ std::cout <<std::endl
+ << "Sorry, " << fileName <<" not a gdcm-readable "
+ << "DICOM / ACR Document"
+ << std::endl;
+ f->Delete();
+ return 1;
+ }
+ std::cout << fileName << " is readable " << std::endl;
+
+ //
+ // No need to load the pixels in memory.
+ // File will be overwritten
+ //
+
+ //
+ // Choose the fields to anonymize.
+ //
+
+ // Institution name
+ f->AddAnonymizeElement( 0x0008, 0x0080, "gdcm-Xanadoo Hospital" );
+ // Patient's name
+ f->AddAnonymizeElement( 0x0010, 0x0010, "gdcm^Fantomas" );
+ // Patient's ID
+ f->AddAnonymizeElement( 0x0010, 0x0020,"1515" );
+ // Patient's Birthdate
+ f->AddAnonymizeElement( 0x0010, 0x0030,"11111111" );
+ // Patient's Adress
+ f->AddAnonymizeElement( 0x0010, 0x1040,"gdcm at Sing-sing.org" );
+ // Patient's Mother's Birth Name
+ f->AddAnonymizeElement( 0x0010, 0x1060,"gdcm^Vampirella" );
+ // Study Instance UID
+ f->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" );
+ // Telephone
+ f->AddAnonymizeElement(0x0010, 0x2154, "3615" );
+
+ for (int ri=0; ri<rubOutNb; ri++)
+ {
+ printf("%04x,%04x\n",elemsToRubOut[2*ri], elemsToRubOut[2*ri+1]);
+ f->AddAnonymizeElement((uint32_t)elemsToRubOut[2*ri],
+ (uint32_t)elemsToRubOut[2*ri+1],"*" );
+ }
+
+ // Aware use will add new fields here
+
+ //
+ // Overwrite the file
+ //
+
+ std::cout <<"Let's AnonymizeNoLoad " << std::endl;
+
+ // The GDCM_NAME_SPACE::File remains untouched in memory
+
+ f->AnonymizeNoLoad();
+
+ // No need to write the file : modif were done on disc !
+ // ( The Dicom file is overwritten )
+ std::cout <<"End AnonymizeNoLoad" << std::endl;
+
+ //
+ // Remove the Anonymize list
+ //
+ f->ClearAnonymizeList();
+
+ f->Delete();
+ return 0;
+
}
- std::cout << fileName << " is readable " << std::endl;
-
- // ============================================================
- // No need to load the pixels in memory.
- // File will be overwritten
- // ============================================================
-
-
- // ============================================================
- // Choose the fields to anonymize.
- // ============================================================
- // Institution name
- f1->AddAnonymizeElement( 0x0008, 0x0080, "Xanadoo" );
- // Patient's name
- f1->AddAnonymizeElement( 0x0010, 0x0010, "Fantomas" );
- // Patient's ID
- f1->AddAnonymizeElement( 0x0010, 0x0020,"1515" );
- // Patient's Birthdate
- f1->AddAnonymizeElement( 0x0010, 0x0030,"11.11.1111" );
- // Patient's Adress
- f1->AddAnonymizeElement( 0x0010, 0x1040,"Sing-sing" );
- // Patient's Mother's Birth Name
- f1->AddAnonymizeElement( 0x0010, 0x1060,"Vampirella" );
- // Study Instance UID
- f1->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" );
- // Telephone
- f1->AddAnonymizeElement(0x0010, 0x2154, "3615" );
-
- // Aware use will add new fields here
-
- // ============================================================
- // Overwrite the file
- // ============================================================
-
- std::cout <<"Let's AnonymizeNoLoad " << std::endl;;
-
- // The gdcm::File remains untouched in memory
-
- f1->AnonymizeNoLoad();
-
- // No need to write the File : modif were done on disc !
- // File was overwritten ...
-
- std::cout <<"End AnonymizeNoLoad" << std::endl;
-
- // ============================================================
- // Remove the Anonymize list
- // ============================================================
- f1->ClearAnonymizeList();
+ else // ====== Deal with a (single Patient) Directory ======
+ {
+ std::cout << "dirName [" << dirName << "]" << std::endl;
+ GDCM_NAME_SPACE::DirList dirList(dirName,1); // gets recursively the file list
+ GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames();
+ for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin();
+ it != fileList.end();
+ ++it )
+ {
+ f = GDCM_NAME_SPACE::File::New( );
+ f->SetLoadMode(loadMode);
+ f->SetFileName( it->c_str() );
+
+ if ( !f->Load() )
+ {
+ f->Delete();
+ continue;
+ }
+ //
+ // Choose the fields to anonymize.
+ //
+
+ // Institution name
+ f->AddAnonymizeElement( 0x0008, 0x0080, "gdcm-Xanadoo Hospital" );
+ // Patient's name
+ f->AddAnonymizeElement( 0x0010, 0x0010, "gdcm^Fantomas" );
+ // Patient's ID
+ f->AddAnonymizeElement( 0x0010, 0x0020,"1515" );
+ // Patient's Birthdate
+ f->AddAnonymizeElement( 0x0010, 0x0030,"11111111" );
+ // Patient's Adress
+ f->AddAnonymizeElement( 0x0010, 0x1040,"gdcm at Sing-sing.org" );
+ // Patient's Mother's Birth Name
+ f->AddAnonymizeElement( 0x0010, 0x1060,"gdcm^Vampirella" );
+ // Study Instance UID
+ // we may not brutaly overwrite it
+ //f->AddAnonymizeElement( 0x0020, 0x000d, "9.99.999.9999" );
+ // Telephone
+ f->AddAnonymizeElement(0x0010, 0x2154, "3615" );
+
+ // deal with user defined Elements set
+
+ for (int ri=0; ri<rubOutNb; ri++)
+ {
+ f->AddAnonymizeElement((uint32_t)elemsToRubOut[2*ri],
+ (uint32_t)elemsToRubOut[2*ri+1],"*" );
+ }
+ std::cout <<"Let's AnonymizeNoLoad " << it->c_str() << std::endl;
+
+ // The GDCM_NAME_SPACE::File remains untouched in memory
+ // The Dicom file is overwritten on disc
+
+ f->AnonymizeNoLoad();
+
+ //
+ // Remove the Anonymize list
+ //
+
+ f->ClearAnonymizeList();
- delete f1;
+ f->Delete();
+ }
+ }
return 0;
}
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff