Program: gdcm
Module: $RCSfile: PrintFile.cxx,v $
Language: C++
- Date: $Date: 2007/09/26 08:07:42 $
- Version: $Revision: 1.86 $
+ Date: $Date: 2009/05/28 15:44:34 $
+ Version: $Revision: 1.93 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include "gdcmOrientation.h"
#include <iostream>
-// TODO : code factorization, for 'single file' an 'whole directory' processing
+/// \todo : code factorization, for 'single file' an 'whole directory' processing
void ShowLutData(GDCM_NAME_SPACE::File *f);
" usage: PrintFile {filein=inputFileName|dirin=inputDirectoryName}[level=n]",
" [forceload=listOfElementsToForceLoad] [rec] [noex] ",
" [4DLoc= ][dict= privateDirectory] ",
- " [ { [noshadowseq] | [noshadow][noseq] } ] ",
+ " [ { [noshadowseq] | [noshadow][noseq] } ] [load] ",
" [debug] [warning] ",
" level = 0,1,2 : depending on the amount of details user wants to see",
" rec : user wants to parse recursively the directory ",
- " noex : user doen't want extra 'user friendly' info ",
+ " load : user wants to load the pixels, as well (to see warning info) ",
+ " noex : user doesn't want extra 'user friendly' info ",
" 4DLoc: group-elem(in hexa, no space) of the DataEntry holdind 4thDim",
" listOfElementsToForceLoad : group-elem,g2-e2,... (in hexa, no space)",
" of Elements to load whatever their length ",
int forceLoadNb;
uint16_t *elemsToForceLoad
= am->ArgMgrGetXInt16Enum("forceload", &forceLoadNb);
-
+
int nbP =0;
uint16_t *FourthDimLoc;
if ( am->ArgMgrDefined("4DLoc") )
}
}
+ bool load = ( 0 != am->ArgMgrDefined("load") );
+
bool showlut = ( 0 != am->ArgMgrDefined("SHOWLUT") );
bool ddict = am->ArgMgrDefined("dict") ? true : false;
// ----------- End Arguments Manager ---------
-
+
if (ddict)
{
- GDCM_NAME_SPACE::Global::GetDicts()->GetDefaultPubDict()->AddDict(dict);
+ GDCM_NAME_SPACE::Global::GetDicts()->GetDefaultPubDict()->AddDict(dict);
}
if ( fileName != 0 ) // ====== Deal with a single file ======
- {
+ {
GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New();
f->SetLoadMode(loadMode);
f->SetFileName( fileName );
+ f->SetMaxSizeLoadEntry(0xffff);
for (int ri=0; ri<forceLoadNb; ri++)
{
f->AddForceLoadElement((uint32_t)elemsToForceLoad[2*ri],
- (uint32_t)elemsToForceLoad[2*ri+1] );
+ (uint32_t)elemsToForceLoad[2*ri+1] );
}
// TODO : find why such a polution
-// To avoid polluting the output with messages
+// To avoid polluting the output with messages
// 'Last system error was : No such file or directory'
errno = 0;
- bool res = f->Load();
+ bool res = false;
+ try
+ {
+ res = f->Load();
+ }
+ catch(std::exception &ex)
+ {
+ std::cerr << "sorry an exception was thrown: " << ex.what() << std::endl;
+ }
// GDCM_NAME_SPACE::File::IsReadable() is no usable here, because we deal with
- // any kind of gdcm-Parsable *document*
+ // any kind of gdcm-Parsable *document*
// not only GDCM_NAME_SPACE::File (as opposed to GDCM_NAME_SPACE::DicomDir)
if ( !res )
{
std::cout << "Cannot process file [" << fileName << "]" << std::endl;
- std::cout << "Either it doesn't exist, or it's read protected "
+ std::cout << "Either it doesn't exist, or it's read protected "
<< std::endl;
- std::cout << "or it's not a Dicom File, or its 'header' is bugged"
+ std::cout << "or it's not a Dicom File, or its 'header' is bugged"
<< std::endl;
std::cout << "use 'PrintFile filein=... debug' to try to guess the pb"
<< std::endl;
f->Delete();
return 0;
}
-
+
if (nbP == 1)
f->SetFourthDimensionLocation(FourthDimLoc[0],FourthDimLoc[1]);
fh->Print();
- std::cout << "\n\n" << std::endl;
+ std::cout << "\n\n" << std::endl;
std::cout <<std::endl;
std::cout <<" dataSize " << fh->GetImageDataSize() << std::endl;
std::cout << " SwapCode= " << f->GetSwapCode() << std::endl;
std::cout << " ------" << std::endl;
+
std::cout << "\n\n" << std::endl;
std::cout << "X spacing " << f->GetXSpacing() << std::endl;
std::cout << "Y spacing " << f->GetYSpacing() << std::endl;
std::cout << "Z spacing " << f->GetZSpacing() << std::endl;
-
+
//------------------------------
+
+
+
+
// Let's get and print some usefull fields about 'Orientation'
// ------------------------------------------------------------
<< strImagePositionPatientRET << "]" << std::endl;
float iop[6];
- /*bool riop = */f->GetImageOrientationPatient(iop);
+ //bool riop =
+ f->GetImageOrientationPatient(iop);
float ipp[3];
- /*bool ripp = */f->GetImagePositionPatient(ipp);
+ //bool ripp =
+ f->GetImagePositionPatient(ipp);
std::cout << "Image Position (0x0020,0x0032|0x0030) : "
<< ipp[0] << " , " << ipp[1] << " , "<< ipp[2]
if (ori != "\\" )
std::cout << "Orientation [" << ori << "]" << std::endl;
o->Delete();
+
+
+/*
+std::vector <double> valueVector;
+GDCM_NAME_SPACE::DataEntry *e_0018_5212 = f->GetDataEntry(0x0018, 0x5212);
+bool resJP = e_0018_5212->GetDSValue(valueVector);
+if (resJP) {
+ double test;
+ for ( int i=0; i < 3; i++ ) {
+ test = valueVector[i];
+ std::cout << " test " << test << std::endl;
+ }
+}
+//e_0018_5212->Delete();
+*/
+
+
+/* -----------------------------
+
+// Try :
+std::cout << std::endl << std::endl << "===========Try Get Numerical ======="
+ << std::endl;
+GDCM_NAME_SPACE::DataEntry *e;
+bool res;
+std::vector<double> vd;
+
+// Transfert Syntax
+e=f->GetDataEntry(0x0002,0x0010);
+if (e){
+ res=e->GetNumerical(vd);
+ if (!res){
+ std::cout << "0x0002,0x0010 not numerical, size =" << vd.size() << std::endl;
+ }
+}
+// Columns
+e=f->GetDataEntry(0x0028,0x0011);
+if (e){
+ res=e->GetNumerical(vd);
+ if (!res){
+ std::cout << "0x0028,0x0011 not numerical, size =" << vd.size() << std::endl;
+ } else {
+ std::cout << "0x0028,0x0011 numerical, size =" << vd.size() << std::endl;
+ std::cout << vd[0]<< std::endl;
+ }
+}
+// Im Orient (Pat)
+e=f->GetDataEntry(0x0020,0x0032);
+if (e){
+ res=e->GetNumerical(vd);
+ if (!res){
+ std::cout << "0x0020,0x0032 not numerical, size =" << vd.size() << std::endl;
+ } else {
+ std::cout << "0x0020,0x0032 numerical, size =" << vd.size() << std::endl;
+ for(int l=0; l<vd.size(); l++)
+ std::cout << "vd[" << l << "]=" << vd[l]<< std::endl;
+ }
+}
+
+// Pixel Spacing
+
+e=f->GetDataEntry(0x0028,0x0030);
+if (e){
+ res=e->GetNumerical(vd);
+ if (!res){
+ std::cout << "0x0028,0x0030 not numerical, size =" << vd.size() << std::endl;
+ } else {
+ std::cout << "0x0028,0x0030 numerical, size =" << vd.size() << std::endl;
+ for(int l=0; l<vd.size(); l++)
+ std::cout << "vd[" << l << "]=" << vd[l]<< std::endl;
+ }
+}
+
+----------------------------------------------*/
+
}
//------------------------------
else
std::cout << "No LUT Data (0x0028,0x3000) found " << std::endl;
}
+ /*
else
{
if ( fh->GetLutItemSize() == 8 )
<< (int)(lutrgba16[i*4+2]) << std::endl;
}
}
+ */
}
else if (showlut)
{
f->Delete();
fh->Delete();
}
- else // ====== Deal with a Directory ======
- {
+ // ===========================================================================
+ else // =============================== Deal with a Directory =====================
+ { // ===========================================================================
std::cout << "dirName [" << dirName << "]" << std::endl;
GDCM_NAME_SPACE::DirList dirList(dirName,rec); // gets recursively (or not) the file list
GDCM_NAME_SPACE::File *f;
bool res;
+ if (fileList.size() == 0)
+ {
+ std::cout << "No file found in : [" << dirName << "]" << std::endl;
+ }
+
for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin();
it != fileList.end();
++it )
std::string ori = o->GetOrientation ( f );
if (ori != "\\" )
std::cout << "Orientation [" << ori << "]" << std::endl;
- o->Delete();
+ o->Delete();
}
//-------------------------------
if (f->IsReadable())
+ {
+ if (load) // just to see warning messages at load time !
+ {
+ uint8_t *pixels = fh->GetImageData(); (void)pixels;
+ uint32_t lgth = fh->GetImageDataSize(); (void)lgth;
+ }
+
std::cout <<std::endl<<it->c_str()<<" is Readable"<<std::endl;
+ }
else
std::cout <<std::endl<<it->c_str()<<" is NOT Readable"<<std::endl;
std::cout << "\n\n" << std::endl;
+
+
+
f->Delete();
fh->Delete();
}
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff