Program: gdcm
Module: $RCSfile: PrintFile.cxx,v $
Language: C++
- Date: $Date: 2006/03/29 16:15:01 $
- Version: $Revision: 1.80 $
+ Date: $Date: 2010/09/01 14:41:48 $
+ Version: $Revision: 1.94 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include "gdcmOrientation.h"
#include <iostream>
-// TODO : code factorization, for 'single file' an 'whole directory' processing
+/// \todo : code factorization, for 'single file' an 'whole directory' processing
-void ShowLutData(gdcm::File *f);
+void ShowLutData(GDCM_NAME_SPACE::File *f);
// Nothing is written yet to get LUT Data user friendly
// The following is to be moved into a PixelReadConvert method
// Let here, waiting for a clever idea on the way to do it.
-void ShowLutData(gdcm::File *f)
+void ShowLutData(GDCM_NAME_SPACE::File *f)
{
- gdcm::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000);
+ GDCM_NAME_SPACE::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000);
if ( modLutSeq !=0 )
{
- gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem();
+ GDCM_NAME_SPACE::SQItem *sqi= modLutSeq->GetFirstSQItem();
if ( sqi != 0 )
{
std::string lutDescriptor = sqi->GetEntryString(0x0028,0x3002);
std::cout << "Wrong LUT descriptor" << std::endl;
}
//LUT Data (CTX dependent)
- gdcm::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006);
+ GDCM_NAME_SPACE::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006);
if ( b != 0 )
{
int BitsAllocated = f->GetBitsAllocated();
" \n PrintFile : \n ",
" Display the header of a ACR-NEMA/PAPYRUS/DICOM File ",
" usage: PrintFile {filein=inputFileName|dirin=inputDirectoryName}[level=n]",
- " [forceload=listOfElementsToForceLoad] ",
+ " [forceload=listOfElementsToForceLoad] [rec] [noex] ",
" [4DLoc= ][dict= privateDirectory] ",
- " [ { [noshadowseq] | [noshadow][noseq] } ] ",
+ " [ { [noshadowseq] | [noshadow][noseq] } ] [load] ",
" [debug] [warning] ",
" level = 0,1,2 : depending on the amount of details user wants to see",
+ " rec : user wants to parse recursively the directory ",
+ " load : user wants to load the pixels, as well (to see warning info) ",
+ " noex : user doesn't want extra 'user friendly' info ",
" 4DLoc: group-elem(in hexa, no space) of the DataEntry holdind 4thDim",
" listOfElementsToForceLoad : group-elem,g2-e2,... (in hexa, no space)",
" of Elements to load whatever their length ",
FINISH_USAGE
// Initialize Arguments Manager
- gdcm::ArgMgr *am= new gdcm::ArgMgr(argc, argv);
+ GDCM_NAME_SPACE::ArgMgr *am= new GDCM_NAME_SPACE::ArgMgr(argc, argv);
if (argc == 1 || am->ArgMgrDefined("usage") )
{
am->ArgMgrUsage(usage); // Display 'usage'
delete am;
return 1;
- }
-
+ }
+
+ bool noex = ( 0 != am->ArgMgrDefined("noex") );
+ bool rec = ( 0 != am->ArgMgrDefined("rec") );
+
if (am->ArgMgrDefined("debug"))
- gdcm::Debug::DebugOn();
+ GDCM_NAME_SPACE::Debug::DebugOn();
if (am->ArgMgrDefined("warning"))
- gdcm::Debug::WarningOn();
+ GDCM_NAME_SPACE::Debug::WarningOn();
- int loadMode = gdcm::LD_ALL;
+ int loadMode = GDCM_NAME_SPACE::LD_ALL;
if ( am->ArgMgrDefined("noshadowseq") )
- loadMode |= gdcm::LD_NOSHADOWSEQ;
+ loadMode |= GDCM_NAME_SPACE::LD_NOSHADOWSEQ;
else
{
if ( am->ArgMgrDefined("noshadow") )
- loadMode |= gdcm::LD_NOSHADOW;
+ loadMode |= GDCM_NAME_SPACE::LD_NOSHADOW;
if ( am->ArgMgrDefined("noseq") )
- loadMode |= gdcm::LD_NOSEQ;
+ loadMode |= GDCM_NAME_SPACE::LD_NOSEQ;
}
int level = am->ArgMgrGetInt("level", 1);
int forceLoadNb;
uint16_t *elemsToForceLoad
= am->ArgMgrGetXInt16Enum("forceload", &forceLoadNb);
-
- int nbP;
+
+ int nbP =0;
uint16_t *FourthDimLoc;
if ( am->ArgMgrDefined("4DLoc") )
{
}
}
+ bool load = ( 0 != am->ArgMgrDefined("load") );
+
bool showlut = ( 0 != am->ArgMgrDefined("SHOWLUT") );
bool ddict = am->ArgMgrDefined("dict") ? true : false;
// ----------- End Arguments Manager ---------
-
+
if (ddict)
{
- gdcm::Global::GetDicts()->GetDefaultPubDict()->AddDict(dict);
+ GDCM_NAME_SPACE::Global::GetDicts()->GetDefaultPubDict()->AddDict(dict);
}
if ( fileName != 0 ) // ====== Deal with a single file ======
- {
- gdcm::File *f = gdcm::File::New();
+ {
+ GDCM_NAME_SPACE::File *f = GDCM_NAME_SPACE::File::New();
f->SetLoadMode(loadMode);
f->SetFileName( fileName );
+ f->SetMaxSizeLoadEntry(0xffff);
for (int ri=0; ri<forceLoadNb; ri++)
{
f->AddForceLoadElement((uint32_t)elemsToForceLoad[2*ri],
- (uint32_t)elemsToForceLoad[2*ri+1] );
+ (uint32_t)elemsToForceLoad[2*ri+1] );
}
+
// TODO : find why such a polution
-// To avoid polluting the output with messages
+// To avoid polluting the output with messages
// 'Last system error was : No such file or directory'
errno = 0;
- bool res = f->Load();
- // gdcm::File::IsReadable() is no usable here, because we deal with
- // any kind of gdcm-Parsable *document*
- // not only gdcm::File (as opposed to gdcm::DicomDir)
+ bool res = false;
+ try
+ {
+ res = f->Load();
+ }
+ catch(std::exception &ex)
+ {
+ std::cerr << "sorry an exception was thrown: " << ex.what() << std::endl;
+ }
+ // GDCM_NAME_SPACE::File::IsReadable() is no usable here, because we deal with
+ // any kind of gdcm-Parsable *document*
+ // not only GDCM_NAME_SPACE::File (as opposed to GDCM_NAME_SPACE::DicomDir)
if ( !res )
{
std::cout << "Cannot process file [" << fileName << "]" << std::endl;
- std::cout << "Either it doesn't exist, or it's read protected "
+ std::cout << "Either it doesn't exist, or it's read protected "
<< std::endl;
- std::cout << "or it's not a Dicom File, or its 'header' is bugged"
+ std::cout << "or it's not a Dicom File, or its 'header' is bugged"
<< std::endl;
std::cout << "use 'PrintFile filein=... debug' to try to guess the pb"
<< std::endl;
f->Delete();
return 0;
}
+
if (nbP == 1)
f->SetFourthDimensionLocation(FourthDimLoc[0],FourthDimLoc[1]);
- gdcm::FileHelper *fh = gdcm::FileHelper::New(f);
+
+ GDCM_NAME_SPACE::FileHelper *fh = GDCM_NAME_SPACE::FileHelper::New(f);
fh->SetPrintLevel( level );
fh->Print();
- std::cout << "\n\n" << std::endl;
+ std::cout << "\n\n" << std::endl;
std::cout <<std::endl;
std::cout <<" dataSize " << fh->GetImageDataSize() << std::endl;
std::cout <<" dataSizeRaw " << fh->GetImageDataRawSize() << std::endl;
-
+if (!noex)
+{
int nX,nY,nZ,nT,sPP,planarConfig;
std::string pixelType;
nX=f->GetXSize();
std::cout << " SwapCode= " << f->GetSwapCode() << std::endl;
std::cout << " ------" << std::endl;
- //std::cout << "\n\n" << std::endl;
- //std::cout << "X spacing " << f->GetXSpacing() << std::endl;
- //std::cout << "Y spacing " << f->GetYSpacing() << std::endl;
- //std::cout << "Z spacing " << f->GetZSpacing() << std::endl;
+ std::cout << "\n\n" << std::endl;
+ std::cout << "X spacing " << f->GetXSpacing() << std::endl;
+ std::cout << "Y spacing " << f->GetYSpacing() << std::endl;
+ std::cout << "Z spacing " << f->GetZSpacing() << std::endl;
+
//------------------------------
- // Lets's get and print some usefull fields about 'Orientation'
+
+ // Let's get and print some usefull fields about 'Orientation'
// ------------------------------------------------------------
std::string strPatientPosition =
f->GetEntryString(0x0018,0x5100);
- if ( strPatientPosition != gdcm::GDCM_UNFOUND
+ if ( strPatientPosition != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strPatientPosition != "" )
std::cout << "PatientPosition (0x0010,0x5100)= ["
<< strPatientPosition << "]" << std::endl;
std::string strViewPosition =
f->GetEntryString(0x0018,0x5101);
- if ( strViewPosition != gdcm::GDCM_UNFOUND
+ if ( strViewPosition != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strViewPosition != "" )
- std::cout << "strViewPosition (0x0010,0x5101)= ["
+ std::cout << "View Position (0x0018,0x5101)= ["
<< strViewPosition << "]" << std::endl;
std::string strPatientOrientation =
f->GetEntryString(0x0020,0x0020);
- if ( strPatientOrientation != gdcm::GDCM_UNFOUND
+ if ( strPatientOrientation != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strPatientOrientation != "")
std::cout << "PatientOrientation (0x0020,0x0020)= ["
<< strPatientOrientation << "]" << std::endl;
std::string strImageOrientationPatient =
f->GetEntryString(0x0020,0x0037);
- if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND
+ if ( strImageOrientationPatient != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strImageOrientationPatient != "" )
std::cout << "ImageOrientationPatient (0x0020,0x0037)= ["
<< strImageOrientationPatient << "]" << std::endl;
std::string strImageOrientationRET =
f->GetEntryString(0x0020,0x0035);
- if ( strImageOrientationRET != gdcm::GDCM_UNFOUND
+ if ( strImageOrientationRET != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strImageOrientationRET != "" )
std::cout << "ImageOrientationRET (0x0020,0x0035)= ["
<< strImageOrientationRET << "]" << std::endl;
+ std::string strImagePositionPatient =
+ f->GetEntryString(0x0020,0x0032);
+ if ( strImagePositionPatient != GDCM_NAME_SPACE::GDCM_UNFOUND
+ && strImagePositionPatient != "" )
+ std::cout << "ImagePositionPatient (0x0020,0x0032)= ["
+ << strImagePositionPatient << "]" << std::endl;
+
+ std::string strImagePositionPatientRET =
+ f->GetEntryString(0x0020,0x0030);
+ if ( strImagePositionPatientRET != GDCM_NAME_SPACE::GDCM_UNFOUND
+ && strImagePositionPatientRET != "" )
+ std::cout << "ImagePositionPatientRET (0x0020,0x0030)= ["
+ << strImagePositionPatientRET << "]" << std::endl;
+
+ float iop[6];
+ //bool riop =
+ f->GetImageOrientationPatient(iop);
+ float ipp[3];
+ //bool ripp =
+ f->GetImagePositionPatient(ipp);
+
+ std::cout << "Image Position (0x0020,0x0032|0x0030) : "
+ << ipp[0] << " , " << ipp[1] << " , "<< ipp[2]
+ << std::endl;
+ std::cout << "Image Orientation (0x0020,0x0037|0x0035) : "
+ << iop[0] << " , " << iop[1] << " , "<< iop[2] << " , "
+ << iop[3] << " , " << iop[4] << " , "<< iop[5]
+ << std::endl;
+
+
// Let's compute 'user friendly' results about 'Orientation'
// ---------------------------------------------------------
- gdcm::Orientation *o = gdcm::Orientation::New();
+ GDCM_NAME_SPACE::Orientation *o = GDCM_NAME_SPACE::Orientation::New();
- if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND ||
- strImageOrientationRET != gdcm::GDCM_UNFOUND )
+ if ( strImageOrientationPatient != GDCM_NAME_SPACE::GDCM_UNFOUND ||
+ strImageOrientationRET != GDCM_NAME_SPACE::GDCM_UNFOUND )
{
- gdcm::OrientationType orient = o->GetOrientationType( f );
+ GDCM_NAME_SPACE::OrientationType orient = o->GetOrientationType( f );
std::cout << "TypeOrientation = " << orient << " (-> "
<< o->GetOrientationTypeString(orient) << " )" << std::endl;
std::string ori = o->GetOrientation ( f );
if (ori != "\\" )
std::cout << "Orientation [" << ori << "]" << std::endl;
-
- o->Delete();
+ o->Delete();
+
+
+/*
+std::vector <double> valueVector;
+GDCM_NAME_SPACE::DataEntry *e_0018_5212 = f->GetDataEntry(0x0018, 0x5212);
+bool resJP = e_0018_5212->GetDSValue(valueVector);
+if (resJP) {
+ double test;
+ for ( int i=0; i < 3; i++ ) {
+ test = valueVector[i];
+ std::cout << " test " << test << std::endl;
+ }
+}
+//e_0018_5212->Delete();
+*/
+
+
+/* -----------------------------
+
+// Try :
+std::cout << std::endl << std::endl << "===========Try Get Numerical ======="
+ << std::endl;
+GDCM_NAME_SPACE::DataEntry *e;
+bool res;
+std::vector<double> vd;
+
+// Transfert Syntax
+e=f->GetDataEntry(0x0002,0x0010);
+if (e){
+ res=e->GetNumerical(vd);
+ if (!res){
+ std::cout << "0x0002,0x0010 not numerical, size =" << vd.size() << std::endl;
+ }
+}
+// Columns
+e=f->GetDataEntry(0x0028,0x0011);
+if (e){
+ res=e->GetNumerical(vd);
+ if (!res){
+ std::cout << "0x0028,0x0011 not numerical, size =" << vd.size() << std::endl;
+ } else {
+ std::cout << "0x0028,0x0011 numerical, size =" << vd.size() << std::endl;
+ std::cout << vd[0]<< std::endl;
+ }
+}
+// Im Orient (Pat)
+e=f->GetDataEntry(0x0020,0x0032);
+if (e){
+ res=e->GetNumerical(vd);
+ if (!res){
+ std::cout << "0x0020,0x0032 not numerical, size =" << vd.size() << std::endl;
+ } else {
+ std::cout << "0x0020,0x0032 numerical, size =" << vd.size() << std::endl;
+ for(int l=0; l<vd.size(); l++)
+ std::cout << "vd[" << l << "]=" << vd[l]<< std::endl;
+ }
+}
+
+// Pixel Spacing
+
+e=f->GetDataEntry(0x0028,0x0030);
+if (e){
+ res=e->GetNumerical(vd);
+ if (!res){
+ std::cout << "0x0028,0x0030 not numerical, size =" << vd.size() << std::endl;
+ } else {
+ std::cout << "0x0028,0x0030 numerical, size =" << vd.size() << std::endl;
+ for(int l=0; l<vd.size(); l++)
+ std::cout << "vd[" << l << "]=" << vd[l]<< std::endl;
+ }
+}
+
+----------------------------------------------*/
+
+}
//------------------------------
// Nothing is written yet to get LUT Data user friendly
// The following is to be moved into a PixelRedaConvert method
- gdcm::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000);
+ GDCM_NAME_SPACE::SeqEntry *modLutSeq = f->GetSeqEntry(0x0028,0x3000);
if ( modLutSeq !=0 )
{
- gdcm::SQItem *sqi= modLutSeq->GetFirstSQItem();
+ GDCM_NAME_SPACE::SQItem *sqi= modLutSeq->GetFirstSQItem();
if ( !sqi )
{
std::string lutDescriptor = sqi->GetEntryString(0x0028,0x3002);
{
std::cout << "Wrong LUT descriptor" << std::endl;
}
- gdcm::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006);
+ GDCM_NAME_SPACE::DataEntry *b = sqi->GetDataEntry(0x0028,0x3006);
if ( b != 0 )
{
if ( b->GetLength() != 0 )
else
std::cout << "No LUT Data (0x0028,0x3000) found " << std::endl;
}
+ /*
else
{
if ( fh->GetLutItemSize() == 8 )
<< (int)(lutrgba16[i*4+2]) << std::endl;
}
}
+ */
}
else if (showlut)
{
ShowLutData(f);
}
- // Parsability of the gdcm::Document already checked, after Load() !
+ // Parsability of the GDCM_NAME_SPACE::Document already checked, after Load() !
if ( f->IsReadable() )
{
f->Delete();
fh->Delete();
}
- else // ====== Deal with a Directory ======
- {
+ // ===========================================================================
+ else // =============================== Deal with a Directory =====================
+ { // ===========================================================================
std::cout << "dirName [" << dirName << "]" << std::endl;
- gdcm::DirList dirList(dirName,1); // gets recursively the file list
- gdcm::DirListType fileList = dirList.GetFilenames();
- gdcm::File *f;
+
+ GDCM_NAME_SPACE::DirList dirList(dirName,rec); // gets recursively (or not) the file list
+ GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames();
+ GDCM_NAME_SPACE::File *f;
bool res;
- for( gdcm::DirListType::iterator it = fileList.begin();
+ if (fileList.size() == 0)
+ {
+ std::cout << "No file found in : [" << dirName << "]" << std::endl;
+ }
+
+ for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin();
it != fileList.end();
++it )
{
std::cout << std::endl<<" Start processing :[" << it->c_str() << "]"
<< std::endl;
- f = gdcm::File::New();
+ f = GDCM_NAME_SPACE::File::New();
f->SetLoadMode(loadMode);
f->SetFileName( it->c_str() );
continue;
}
- gdcm::FileHelper *fh = gdcm::FileHelper::New(f);
+ GDCM_NAME_SPACE::FileHelper *fh = GDCM_NAME_SPACE::FileHelper::New(f);
fh->SetPrintLevel( level );
fh->Print();
//------------------------------
-
+if (!noex)
+{
// Lets's get and print some usefull fields about 'Orientation'
// ------------------------------------------------------------
std::string strPatientPosition =
f->GetEntryString(0x0018,0x5100);
- if ( strPatientPosition != gdcm::GDCM_UNFOUND
+ if ( strPatientPosition != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strPatientPosition != "" )
std::cout << "PatientPosition (0x0010,0x5100)= ["
<< strPatientPosition << "]" << std::endl;
std::string strViewPosition =
f->GetEntryString(0x0018,0x5101);
- if ( strViewPosition != gdcm::GDCM_UNFOUND
+ if ( strViewPosition != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strViewPosition != "" )
std::cout << "strViewPosition (0x0010,0x5101)= ["
<< strViewPosition << "]" << std::endl;
std::string strPatientOrientation =
f->GetEntryString(0x0020,0x0020);
- if ( strPatientOrientation != gdcm::GDCM_UNFOUND
+ if ( strPatientOrientation != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strPatientOrientation != "")
std::cout << "PatientOrientation (0x0020,0x0020)= ["
<< strPatientOrientation << "]" << std::endl;
std::string strImageOrientationPatient =
f->GetEntryString(0x0020,0x0037);
- if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND
+ if ( strImageOrientationPatient != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strImageOrientationPatient != "" )
std::cout << "ImageOrientationPatient (0x0020,0x0037)= ["
<< strImageOrientationPatient << "]" << std::endl;
std::string strImageOrientationRET =
f->GetEntryString(0x0020,0x0035);
- if ( strImageOrientationRET != gdcm::GDCM_UNFOUND
+ if ( strImageOrientationRET != GDCM_NAME_SPACE::GDCM_UNFOUND
&& strImageOrientationRET != "" )
{
std::cout << "ImageOrientationRET (0x0020,0x0035)= ["
// Let's compute 'user friendly' results about 'Orientation'
// ---------------------------------------------------------
- gdcm::Orientation *o = gdcm::Orientation::New();
+ GDCM_NAME_SPACE::Orientation *o = GDCM_NAME_SPACE::Orientation::New();
- if ( strImageOrientationPatient != gdcm::GDCM_UNFOUND ||
- strImageOrientationRET != gdcm::GDCM_UNFOUND )
+ if ( strImageOrientationPatient != GDCM_NAME_SPACE::GDCM_UNFOUND ||
+ strImageOrientationRET != GDCM_NAME_SPACE::GDCM_UNFOUND )
{
- gdcm::OrientationType orient = o->GetOrientationType( f );
+ GDCM_NAME_SPACE::OrientationType orient = o->GetOrientationType( f );
std::cout << "TypeOrientation = " << orient << " (-> "
<< o->GetOrientationTypeString(orient) << " )" << std::endl;
std::string ori = o->GetOrientation ( f );
if (ori != "\\" )
std::cout << "Orientation [" << ori << "]" << std::endl;
- o->Delete();
-
+ o->Delete();
+}
//-------------------------------
if (f->IsReadable())
+ {
+ if (load) // just to see warning messages at load time !
+ {
+ uint8_t *pixels = fh->GetImageData(); (void)pixels;
+ uint32_t lgth = fh->GetImageDataSize(); (void)lgth;
+ }
+
std::cout <<std::endl<<it->c_str()<<" is Readable"<<std::endl;
+ }
else
std::cout <<std::endl<<it->c_str()<<" is NOT Readable"<<std::endl;
std::cout << "\n\n" << std::endl;
+
+
+
f->Delete();
fh->Delete();
}
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff