--- /dev/null
+/*=========================================================================
+
+ Program: gdcm
+ Module: $RCSfile: SingleFrames2Multiframe.cxx,v $
+ Language: C++
+ Date: $Date: 2010/09/01 14:40:00 $
+ Version: $Revision: 1.1 $
+
+ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
+ l'Image). All rights reserved. See Doc/License.txt or
+ http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the above copyright notices for more information.
+
+=========================================================================*/
+#include "gdcmFile.h"
+#include "gdcmDocument.h"
+#include "gdcmSeqEntry.h"
+#include "gdcmSQItem.h"
+#include "gdcmDataEntry.h"
+#include "gdcmUtil.h"
+
+#include "gdcmFileHelper.h"
+#include "gdcmDebug.h"
+#include "gdcmDirList.h"
+#include "gdcmGlobal.h"
+#include "gdcmDictSet.h"
+#include "gdcmArgMgr.h"
+#include "gdcmOrientation.h"
+#include <iostream>
+
+#include <algorithm>
+
+int main(int argc, char *argv[])
+{
+
+ START_USAGE(usage)
+ " \n SingleFrames2Multiframe : \n ",
+ " Converts a directory holding a set of SingleFrames to a Multiframe file",
+ " usage: SingleFrames2Multiframe {dirin=inputDirectoryName} ",
+ " fileout=nomDuFichierMultiframe ",
+
+ " [debug] [warning] ",
+ " studyUID : *aware* user wants to add the serie ",
+ " to an already existing study ",
+ " serieUID : *aware* user wants to give his own serie UID ",
+ " debug : user wants to run the program in 'debug mode' ",
+ " warning : user wants to be warned about any oddity in the File ",
+ FINISH_USAGE
+
+ // Initialize Arguments Manager
+ GDCM_NAME_SPACE::ArgMgr *am= new GDCM_NAME_SPACE::ArgMgr(argc, argv);
+
+ if (argc == 1 || am->ArgMgrDefined("usage") )
+ {
+ am->ArgMgrUsage(usage); // Display 'usage'
+ delete am;
+ return 1;
+ }
+
+ const char *dirName = am->ArgMgrGetString("dirin");
+
+ if (dirName == 0 )
+ {
+ std::cerr << std::endl
+ << "'dirin=' must be present;";
+ am->ArgMgrUsage(usage); // Display 'usage'
+ delete am;
+ return 1;
+ }
+
+ const char *outputFileName = am->ArgMgrGetString("fileout");
+ if (outputFileName == 0 )
+ {
+ std::cerr << std::endl
+ << "'fileout=' must be present;" ;
+ am->ArgMgrUsage(usage); // Display 'usage'
+ delete am;
+ return 1;
+ }
+
+ if (am->ArgMgrDefined("debug"))
+ GDCM_NAME_SPACE::Debug::DebugOn();
+
+ if (am->ArgMgrDefined("warning"))
+ GDCM_NAME_SPACE::Debug::WarningOn();
+
+ bool userDefinedStudy = ( 0 != am->ArgMgrDefined("studyUID") );
+ const char *studyUID;
+ if (userDefinedStudy)
+ studyUID = am->ArgMgrGetString("studyUID");
+
+ // not described *on purpose* in the Usage !
+ bool userDefinedSerie = ( 0 != am->ArgMgrDefined("serieUID") );
+ const char *serieUID;
+ if(userDefinedSerie)
+ serieUID = am->ArgMgrGetString("serieUID");
+
+ /* if unused Param we give up */
+ if ( am->ArgMgrPrintUnusedLabels() )
+ {
+ am->ArgMgrUsage(usage);
+ delete am;
+ return 1;
+ }
+
+ delete am; // we don't need Argument Manager any longer
+
+ // ----------- End Arguments Manager ---------
+
+
+ GDCM_NAME_SPACE::DirList dirList(dirName,false); // gets recursively (or not) the file list
+ GDCM_NAME_SPACE::DirListType fileList = dirList.GetFilenames();
+ GDCM_NAME_SPACE::File *f;
+
+ bool res;
+
+ if (fileList.size() == 0)
+ {
+ std::cout << "No file found in : [" << dirName << "]" << std::endl;
+ exit(0);
+ }
+
+ // Order on file name (no pertinent info within header for 'secondary capture storage' images
+ //fileList.sort();
+ std::sort( fileList.begin(), fileList.end() );
+
+ f = GDCM_NAME_SPACE::File::New();
+ f->SetFileName( fileList[0].c_str() );
+ res = f->Load();
+
+ // if first file is not gdcm-readable, we give up.
+ // (maybe we should check *all* the files ...)
+
+ if (!res)
+ {
+ std::cout << "Cannot process file [" << fileList[0].c_str() << "]"
+ << std::endl;
+ std::cout << "Either it doesn't exist, or it's read protected "
+ << std::endl;
+ std::cout << "or it's not a Dicom File, or its 'header' is bugged"
+ << std::endl;
+ std::cout << "use 'PrintFile filein=... debug' "
+ << "to try to guess the pb"
+ << std::endl;
+ f->Delete();
+ exit(0);
+ }
+
+ int nX = f->GetXSize();
+ int nY = f->GetYSize();
+ int nZ = fileList.size();
+ int pxSz = f->GetPixelSize();
+ int sPP = f->GetSamplesPerPixel();
+
+ std::string stud= f->GetEntryString(0x0020,0x000d );
+ std::cout << "------------------------------------------------ Study UID " << stud << std::endl;
+
+
+ std::cout << "First file nX " << nX << " nY " << nY << " nZ " << nZ << " pxSz " << pxSz << " sPP " << sPP << std::endl;
+ std::cout << "Image size " << nX*nY*pxSz*sPP << std::endl;
+
+ char *imageBuffer; // = new char[nX*nY*pxSz];
+ char *globalBuffer = new char[nX*nY*nZ*pxSz*sPP];
+
+ int i = 0; // image counter
+ for( GDCM_NAME_SPACE::DirListType::iterator it = fileList.begin();
+ it != fileList.end();
+ ++it )
+ {
+ std::cout << std::endl<<" Start processing :[" << it->c_str() << "]"
+ << std::endl;
+ f = GDCM_NAME_SPACE::File::New();
+ f->SetFileName( it->c_str() );
+ res = f->Load();
+
+ if ( !res )
+ {
+ std::cout << "Cannot process file [" << it->c_str() << "]"
+ << std::endl;
+ std::cout << "Either it doesn't exist, or it's read protected "
+ << std::endl;
+ std::cout << "or it's not a Dicom File, or its 'header' is bugged"
+ << std::endl;
+ std::cout << "use 'PrintFile filein=... debug' "
+ << "to try to guess the pb"
+ << std::endl;
+ f->Delete();
+ continue;
+ }
+
+ GDCM_NAME_SPACE::FileHelper *fh = GDCM_NAME_SPACE::FileHelper::New(f);
+ imageBuffer = (char *)fh->GetImageData();
+ int lgr = fh->GetImageDataSize();
+
+ // we check all the files are consistent with the first one
+ if ( lgr != nX*nY*pxSz*sPP)
+ {
+ std::cout << "File : [" << it->c_str() << "] inconsistent with first one (lgr " << lgr << " vs " << nX*nY*pxSz*sPP<< "); ignored!" << std::endl;
+ continue;
+ }
+ else
+
+ {
+ memcpy(globalBuffer+i*nX*nY*pxSz*sPP, imageBuffer, lgr );
+ i++;
+ }
+ fh->Delete();
+ }
+
+ GDCM_NAME_SPACE::FileHelper *fh2 = GDCM_NAME_SPACE::FileHelper::New();
+
+ std::string strStudyUID;
+ std::string strSerieUID;
+
+ if (userDefinedStudy)
+ strSerieUID = studyUID;
+ else
+ {
+ //strStudyUID = GDCM_NAME_SPACE::Util::CreateUniqueUID();
+
+ strStudyUID = stud;
+ }
+
+ if (userDefinedSerie)
+ strSerieUID = serieUID;
+ else
+ strSerieUID = GDCM_NAME_SPACE::Util::CreateUniqueUID();
+
+ char temp[64];
+
+ sprintf(temp, "%d", sPP);
+ fh2->InsertEntryString(temp,0x0028,0x0002, "US"); // Samples per Pixel
+
+ sprintf(temp, "%d", nY);
+ fh2->InsertEntryString(temp,0x0028,0x0010, "US"); // Number of Rows
+
+ sprintf(temp, "%d", nX);
+ fh2->InsertEntryString(temp,0x0028,0x0011, "US"); // Number of Columns
+
+ sprintf(temp, "%d", nZ);
+ fh2->InsertEntryString(temp,0x0028,0x0008, "IS"); // Number of Frames
+
+ sprintf(temp, "%d", pxSz*8);
+ fh2->InsertEntryString(temp,0x0028,0x0100, "US"); // Bits Allocated
+
+
+
+ // 'Study Instance UID'
+ // The user is allowed to create his own Study,
+ // keeping the same 'Study Instance UID' for various images
+ // The user may add images to a 'Manufacturer Study',
+ // adding new Series to an already existing Study
+
+ fh2->InsertEntryString(strStudyUID,0x0020,0x000d,"UI"); // Study UID
+
+ // 'Serie Instance UID'
+ // The user is allowed to create his own Series,
+ // keeping the same 'Serie Instance UID' for various images
+ // The user shouldn't add any image to a 'Manufacturer Serie'
+ // but there is no way no to prevent him for doing that
+
+ fh2->InsertEntryString(strSerieUID,0x0020,0x000e,"UI"); // Serie UID
+
+ // Set the image Pixel Data
+ fh2->SetUserData((uint8_t *)globalBuffer, nX*nY*pxSz*sPP*nZ);
+
+ res = fh2->Write(outputFileName);
+
+ if(!res)
+ std::cout <<"Fail to write [" << outputFileName << "]" <<std::endl;
+
+ f->Delete();
+ fh2->Delete();
+
+ return 0;
+}
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff