Program: gdcm
Module: $RCSfile: exReadWriteFile.cxx,v $
Language: C++
- Date: $Date: 2005/02/03 15:44:20 $
- Version: $Revision: 1.1 $
+ Date: $Date: 2010/09/01 14:41:48 $
+ Version: $Revision: 1.11 $
Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
l'Image). All rights reserved. See Doc/License.txt or
#include "gdcmFile.h"
#include "gdcmFileHelper.h"
#include "gdcmDocument.h"
-#include "gdcmValEntry.h"
-#include "gdcmBinEntry.h"
+#include "gdcmDataEntry.h"
#include "gdcmSeqEntry.h"
-// ----- WARNING ----- WARNING ----- WARNING ----- WARNING ----- WARNING ---
-//
-// This program is NOT intendend to be run as is.
-//
-// It just shows a set of possible uses.
-// User MUST read it,
-// comment out the useless parts
-// invoke it with an ad hoc image(*)
-// check the resulting image
-//
-// (*) For samples, user can refer to gdcmData
-// and read README.txt file
-//
-// ----- WARNING ----- WARNING ----- WARNING ----- WARNING ----- WARNING ---
-
+#include <stdlib.h> // for exit
int main(int argc, char *argv[])
{
+std::cout << " --- WARNING --- WARNING --- WARNING --- WARNING ---" <<std::endl;
+std::cout << " " <<std::endl;
+std::cout << " This source program is NOT intendend to be run as is"<<std::endl;
+std::cout << " " <<std::endl;
+std::cout << " It just shows a set of possible uses." <<std::endl;
+std::cout << "User MUST read it, " <<std::endl;
+std::cout << " comment out the useless parts " <<std::endl;
+std::cout << " invoke it with an ad hoc image(*) " <<std::endl;
+std::cout << " check the resulting image " <<std::endl;
+std::cout << " " <<std::endl;
+std::cout << " (*) For samples, user can refer to gdcmData" <<std::endl;
+std::cout << " and read README.txt file " <<std::endl;
+std::cout << " " <<std::endl;
+std::cout << "This source program will be splitted into smaller elementary"
+ << " programs" <<std::endl;
+std::cout << " " <<std::endl;
+std::cout << " --- WARNING --- WARNING --- WARNING --- WARNING ---" <<std::endl;
+
if (argc < 3)
{
std::cerr << "Usage :" << std::endl <<
std::string filename = argv[1];
std::string output = argv[2];
- // First, let's create a gdcm::File
- // that will contain all the Dicom Field but the Pixels Element
+ // First, let's create a GDCM_NAME_SPACE::File
+ // that will contain all the Dicom fields but the Pixels Element
- gdcm::File *e1= new gdcm::File( filename );
+ GDCM_NAME_SPACE::File *f1= GDCM_NAME_SPACE::File::New( );
+ f1->SetFileName( filename );
+ f1->Load();
// Ask content to be printed
std::cout << std::endl
<< "--- Standard Print -------------------------------------------"
<< std::endl;
- e1->SetPrintLevel(2); // to have a nice output
- //e1->SetPrintLevel(1);
- e1->Print(); // user may comment out if too much verbose
+ f1->SetPrintLevel(2); // to have a nice output
+ //f1->SetPrintLevel(1);
+ f1->Print(); // user may comment out if too much verbose
- // Field by field Printing
+ // User asks for field by field Printing
std::cout << std::endl
<< "--- Display only human readable values -----------------------"
<< std::endl;
- gdcm::ValEntry *valEntry;
- uint16_t group;
- uint16_t elem;
- int offset;
+ GDCM_NAME_SPACE::DataEntry *dataEntry;
std::string value;
- std::string vr; // value representation
+ GDCM_NAME_SPACE::VRKey vr; // value representation
std::string vm; // value multiplicity
std::string name; // held in the Dicom Dictionary
- gdcm::DocEntry *d = e1->GetFirstEntry();
+ GDCM_NAME_SPACE::DocEntry *d = f1->GetFirstEntry();
while( d )
{
// We skip SeqEntries, since user cannot do much with them
- if ( !(dynamic_cast<gdcm::SeqEntry*>(d))
+ if ( !(dynamic_cast<GDCM_NAME_SPACE::SeqEntry*>(d))
// We skip Shadow Groups, since nobody knows what they mean
- && !( d->GetGroup()%2 )
- // we skip BinEntries, since their content is not human-readable
- && !dynamic_cast<gdcm::BinEntry*>(d) )
+ && !( d->GetGroup()%2 ) )
{
// If user just 'wants to see'
//d->Print();
//std::cout << std::endl;
// If user wants to get info about the entry
- // (he is sure, here that DocEntry is a ValEntry)
- valEntry = dynamic_cast<gdcm::ValEntry*>(d);
+ // (he is sure, here that DocEntry is a DataEntry)
+ dataEntry = dynamic_cast<GDCM_NAME_SPACE::DataEntry *>(d);
// Let's be carefull -maybe he commented out some previous line-
- if (!valEntry)
+ if (!dataEntry)
continue;
- value = valEntry->GetValue();
- group = valEntry->GetGroup();
- elem = valEntry->GetElement();
- vr = valEntry->GetVR();
+ value = dataEntry->GetString();
+ vr = dataEntry->GetVR();
// user wants really to know everything about entry!
- vm = valEntry->GetVM();
- name = valEntry->GetName();
- offset = valEntry->GetOffset();
+ vm = dataEntry->GetVM();
+ name = dataEntry->GetName();
std::cout //<< std::hex << group << "," << elem
- << valEntry->GetKey()
- << " VR :[" << vr << "] VM : [" << vm
+ << dataEntry->GetKey()
+ << " VR :[" << vr << "] VM : [" << vm
<< "] name : [" << name << "]"
<< " value : [" << value << "]"
-
- << std::endl;
+ << std::endl;
}
- d = e1->GetNextEntry();
+ d = f1->GetNextEntry();
}
std::cout << std::endl
// ------ some pre-defined acessors may supply usefull informations ----
// about Image
- int linesNumber = e1->GetYSize();
- int rawsNumber = e1->GetXSize();
- int framesNumber = e1->GetYSize();// defaulted to 1 if not found
+ int linesNumber = f1->GetYSize();
+ int rawsNumber = f1->GetXSize();
+ int framesNumber = f1->GetYSize();// defaulted to 1 if not found
std::cout << "lines : " << linesNumber << " columns : " << rawsNumber
<< " frames : " << framesNumber << std::endl;
// about Pixels
- int pixelSize = e1->GetPixelSize();
- std::string pixelType = e1->GetPixelType();
- bool isSigned = e1->IsSignedPixelData();
+ int pixelSize = f1->GetPixelSize();
+ std::string pixelType = f1->GetPixelType();
+ bool isSigned = f1->IsSignedPixelData();
std::cout << "pixelSize : " << pixelSize << " pixelType : " << pixelType
<< " signed : " << isSigned << std::endl;
// about pixels, too.
// Better you forget these ones
- std::cout << "GetBitsStored()" << e1->GetBitsStored() << std::endl;
- std::cout << "GetBitsAllocated()" << e1->GetBitsAllocated() << std::endl;
- std::cout << "GetHighBitPosition()" << e1->GetHighBitPosition() << std::endl;
+ std::cout << "GetBitsStored()" << f1->GetBitsStored() << std::endl;
+ std::cout << "GetBitsAllocated()" << f1->GetBitsAllocated() << std::endl;
+ std::cout << "GetHighBitPosition()" << f1->GetHighBitPosition() << std::endl;
std::cout << "GetSamplesPerPixel()"
- << e1->GetSamplesPerPixel() << std::endl;
+ << f1->GetSamplesPerPixel() << std::endl;
std::cout << "GetPlanarConfiguration()"
- << e1->GetPlanarConfiguration() << std::endl;
+ << f1->GetPlanarConfiguration() << std::endl;
// about 'image geography'
- float xs = e1->GetXSpacing();
- float ys = e1->GetYSpacing();
- float zs = e1->GetZSpacing(); // defaulted to 1.0 if not found
+ float xs = f1->GetXSpacing();
+ float ys = f1->GetYSpacing();
+ float zs = f1->GetZSpacing(); // defaulted to 1.0 if not found
- float xo = e1->GetXOrigin();
- float yo = e1->GetYOrigin();
- float zo = e1->GetZOrigin();
+ float xo = f1->GetXOrigin();
+ float yo = f1->GetYOrigin();
+ float zo = f1->GetZOrigin();
std::cout << "GetXSpacing()" << xs << std::endl;
std::cout << "GetYSpacing()" << ys << std::endl;
// about its way to store colors (if user is aware)
// checks Photometric Interpretation
- std::cout << "IsMonochrome()" << e1->IsMonochrome() << std::endl;
- std::cout << "IsYBRFull()" << e1->IsYBRFull() << std::endl;
- std::cout << "IsPaletteColor()" << e1->IsPaletteColor() << std::endl;
+ std::cout << "IsMonochrome()" << f1->IsMonochrome() << std::endl;
+ std::cout << "IsYBRFull()" << f1->IsYBRFull() << std::endl;
+ std::cout << "IsPaletteColor()" << f1->IsPaletteColor() << std::endl;
// checks if LUT are found
- std::cout << "HasLUT()" << e1->HasLUT() << std::endl;
+ std::cout << "HasLUT()" << f1->HasLUT() << std::endl;
std::cout << "GetNumberOfScalarComponents()"
- << e1->GetNumberOfScalarComponents()<< std::endl;
+ << f1->GetNumberOfScalarComponents()<< std::endl;
std::cout << "GetNumberOfScalarComponentsRaw()"
- << e1->GetNumberOfScalarComponentsRaw()<< std::endl;
+ << f1->GetNumberOfScalarComponentsRaw()<< std::endl;
std::cout << std::endl
<< std::endl;
// ------ User is aware, and wants to get fields with no accesor --------
- std::cout << "Manufacturer :[" << e1->GetEntryValue(0x0008,0x0070)
+ std::cout << "Manufacturer :[" << f1->GetEntryString(0x0008,0x0070)
<< "]" << std::endl;
- std::cout << "Institution :[" << e1->GetEntryValue(0x0008,0x0080)
+ std::cout << "Institution :[" << f1->GetEntryString(0x0008,0x0080)
<< "]" << std::endl;
- std::cout << "Patient's name :[" << e1->GetEntryValue(0x0010,0x0010)
+ std::cout << "Patient's name :[" << f1->GetEntryString(0x0010,0x0010)
<< "]" << std::endl;
- std::cout << "Physician's name :[" << e1->GetEntryValue(0x0008,0x0090)
+ std::cout << "Physician's name :[" << f1->GetEntryString(0x0008,0x0090)
<< "]" << std::endl;
- std::cout << "Study Date :[" << e1->GetEntryValue(0x0008,0x0020)
+ std::cout << "Study Date :[" << f1->GetEntryString(0x0008,0x0020)
<< "]" << std::endl;
- std::cout << "Study inst UID :[" << e1->GetEntryValue(0x0020,0x000d)
+ std::cout << "Study inst UID :[" << f1->GetEntryString(0x0020,0x000d)
<< "]" << std::endl;
- std::cout << "Serie inst UID :[" << e1->GetEntryValue(0x0020,0x000e)
+ std::cout << "Serie inst UID :[" << f1->GetEntryString(0x0020,0x000e)
<< "]" << std::endl;
- std::cout << "Frame ref UID :[" << e1->GetEntryValue(0x0020,0x0052)
+ std::cout << "Frame ref UID :[" << f1->GetEntryString(0x0020,0x0052)
<< "]" << std::endl;
+
+ // User wants to get info about the 'real world' vs image
+
// ------ User wants to load the pixels---------------------------------
// Hope now he knows enought about the image ;-)
- // First, create a gdcm::FileHelper
- gdcm::FileHelper *fh1 = new gdcm::FileHelper(e1);
+ // First, create a GDCM_NAME_SPACE::FileHelper
+ GDCM_NAME_SPACE::FileHelper *fh1 = GDCM_NAME_SPACE::FileHelper::New(f1);
// Load the pixels, transforms LUT (if any) into RGB Pixels
uint8_t *imageData = fh1->GetImageData();
// Get the image data size
size_t dataRawSize = fh1->GetImageDataRawSize();
- // TODO : Newbee user would appreciate any comment !
+ /// \TODO : Newbee user would appreciate any comment !
std::cout << "GetImageDataSize()"
<< fh1->GetImageDataSize() << std::endl;
// ------ User wants write a new image without shadow groups -------------
- gdcm::FileHelper *copy = new gdcm::FileHelper( output );
+ GDCM_NAME_SPACE::FileHelper *copy = GDCM_NAME_SPACE::FileHelper::New( );
+ copy->SetFileName( output );
+ copy->Load();
- d = e1->GetFirstEntry();
+ d = f1->GetFirstEntry();
while(d)
{
// We skip SeqEntries, since user cannot do much with them
- if ( !(dynamic_cast<gdcm::SeqEntry*>(d))
+ if ( !(dynamic_cast<GDCM_NAME_SPACE::SeqEntry*>(d))
// We skip Shadow Groups, since nobody knows what they mean
&& !( d->GetGroup()%2 ) )
{
- if ( gdcm::BinEntry *b = dynamic_cast<gdcm::BinEntry*>(d) )
+ if ( GDCM_NAME_SPACE::DataEntry *de = dynamic_cast<GDCM_NAME_SPACE::DataEntry *>(d) )
{
- copy->GetFile()->InsertBinEntry( b->GetBinArea(),b->GetLength(),
- b->GetGroup(),b->GetElement(),
- b->GetVR() );
- }
- else if ( gdcm::ValEntry *v = dynamic_cast<gdcm::ValEntry*>(d) )
- {
- copy->GetFile()->InsertValEntry( v->GetValue(),
- v->GetGroup(),v->GetElement(),
- v->GetVR() );
+ copy->GetFile()->InsertEntryBinArea( de->GetBinArea(),de->GetLength(),
+ de->GetGroup(),de->GetElement(),
+ de->GetVR() );
}
else
{
- // We skip gdcm::SeqEntries
+ // We skip GDCM_NAME_SPACE::SeqEntries
}
}
- d = e1->GetNextEntry();
+ d = f1->GetNextEntry();
}
std::cout << std::endl
// User wants to keep the Palette Color -if any-
// and write the image as it was
copy->SetImageData(imageDataRaw, dataRawSize);
- copy->SetWriteModeToRGB();
+ copy->SetWriteModeToRaw();
copy->WriteDcmExplVR( output );
std::cout << std::endl
<< "------------------------------------------------------------"
<< std::endl;
- // User is in a fancy mood and wants to forge a bonm image
+ // User is in a fancy mood and wants to forge a bomb image
// just to see how other Dicom viewers act
std::cout << std::endl
<< "------------------------------------------------------------"
<< std::endl;
- delete e1;
- delete fh1;
- delete copy;
+ f1->Delete();
+ fh1->Delete();
+ copy->Delete();
exit (0);
}
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff