* vtk/vtkGdcmReader.[h|cxx] : bug fix. Plane order isn't inverted

[gdcm.git] / Testing / CMakeLists.txt

diff --git a/Testing/CMakeLists.txt b/Testing/CMakeLists.txt
index c20bc31eb433c769de54f77b8677e66aa5ba00fb..1dedc01fccefbf1720d8bcb39969f0b86f6278c0 100644 (file)
--- a/Testing/CMakeLists.txt
+++ b/Testing/CMakeLists.txt
@@ -9,32 +9,40 @@ SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
 # They usally return if no argument is given
 SET(TEST_SOURCES
   TestBug.cxx
-  TestDcm2Acr.cxx
   TestHash.cxx
-  TestWrite.cxx
-  TestReadWriteReadCompare.cxx
-  TestWriteSimple.cxx
+  TestTS.cxx
+  TestVR.cxx
+  TestUtil.cxx
+  TestDicomString.cxx
 )
 
 # add tests that require data
 IF (GDCM_DATA_ROOT)
   SET(TEST_SOURCES ${TEST_SOURCES}     
-    #PrintHeader.cxx       #require test.acr
-    PrintAllDocument.cxx     #require test.acr
+    TestReadWriteReadCompare.cxx     # includes generated gdcmDataImages.h 
+    PrintAllDocument.cxx             # includes generated gdcmDataImages.h
+    TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
+    TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
     PrintDicomDir.cxx
-    TestFindTags.cxx
-    TestChangeHeader.cxx
-    TestDicomDir.cxx      #require DICOMDIR
-    BuildUpDicomDir.cxx
-    makeDicomDir.cxx
+    #TestChangeHeader.cxx
+    TestDicomDir.cxx                 # require DICOMDIR
+    BuildUpDicomDir.cxx              # writes a file named "NewDICOMDIR"
+    makeDicomDir.cxx                 # writes a file named "NewDICOMDIR"
+    TestCopyDicom.cxx
+    TestCopyRescaleDicom.cxx
   )
   # add test that require VTK:
   IF(GDCM_VTK)
+    # Include the VTK library
+    INCLUDE(${VTK_USE_FILE})
+
     INCLUDE_DIRECTORIES(
       ${GDCM_SOURCE_DIR}/vtk/
       )
     SET(TEST_SOURCES ${TEST_SOURCES}
-      ShowDicom.cxx    
+      ShowDicom.cxx
+      ShowDicomSeq.cxx
+      TestWriteWithVTK.cxx
       )
   ENDIF(GDCM_VTK)
 ENDIF (GDCM_DATA_ROOT)
@@ -80,9 +88,15 @@ IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
   FILE(GLOB GDCM_DATA_IMAGES_GLOB
     "${GDCM_DATA_ROOT}/*.acr"
     "${GDCM_DATA_ROOT}/*.dcm"
-#    "${GDCM_DATA_ROOT}/*.nema"
+    "${GDCM_DATA_ROOT}/*.nema"
     "${GDCM_DATA_ROOT}/*.ima"
     )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
+    "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+    "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+    "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+    "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+    )
 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)   
   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
@@ -92,7 +106,7 @@ ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
     "${GDCM_DATA_ROOT}/*.dcm"
     )
   FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
-#    "${GDCM_DATA_ROOT}/*.nema"
+    "${GDCM_DATA_ROOT}/*.nema"
     )
   FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
     "${GDCM_DATA_ROOT}/*.ima"
@@ -100,23 +114,41 @@ ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
   SET(GDCM_DATA_IMAGES_GLOB 
     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
-  #SET(GDCM_DATA_IMAGES_GLOB  ${GDCM_DATA_IMAGES_GLOB_ACR})
+
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
+    "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
+    "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
+    "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
+    "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+    )
+  SET(GDCM_DATA_SEQ_IMAGES_GLOB 
+    ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
+    ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)   
 
 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 SET(BLACK_LIST
-  "gdcm-JPEG-LossLessThoravision.dcm" # serial killer
-  "cr172241.dcm"           #temporarily remove as it kills my gnome session (but not kde)
-  "emptyImage.dcm"         #the png looks ugly...
-  "gdcm-MR-PHILIPS-16-Multi-Seq.fixed.dcm" #weird looks exactly the same as gdcm-MR-PHILIPS-16-Multi-Seq.dcm
-  "gdcm-MR-PHILIPS-16.dcm" #png looks ugly
-  "irmPhlipsNew1.dcm"      #png looks ugly
-  "mriThruVPRO.dcm"        #png looks ugly
-  "US.3405.1.dcm"          #looks exactly the same as US.1.2.dcm
+  # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
+  "gdcm-JPEG-LossLessThoravision.dcm"
+  
+  # Mathieu: temporarily remove as it kills my gnome session (but not kde)
+  # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
+  #      in memory)  
+  "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
   )
 
-#   gdcm-ACR-LibIDO seems to be cut
-#   test.acr is very bright
+IF(APPLE)
+  SET(BLACK_LIST ${BLACK_LIST}
+    "SIEMENS_GBS_III-16-ACR_NEMA_1.acr"  # This image contains a wrong length
+    # Which led us to read pass the end of the file. This seg fault on MacOSX
+    )
+ENDIF(APPLE)
 
 # This is a GLOB expression, change it into a list separated with a comma and \n
 SET(GDCM_DATA_IMAGES)
@@ -128,7 +160,23 @@ FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
   ENDIF(NOT bad_dicom)
 ENDFOREACH(filename)
 
+SET(GDCM_DATA_SEQ_IMAGES)
+FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
+  GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+  STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
+  IF(NOT bad_dicom)
+    STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
+
+    SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
+  ENDIF(NOT bad_dicom)
+ENDFOREACH(filename)
+
 # Populate GDCM_DATA_IMAGES:
 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n" 
   )
+
+# Populate GDCM_DATA_SEQ_IMAGES:
+FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
+  "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n" 
+  )