# add test that does not require data:
# They usally return if no argument is given
SET(TEST_SOURCES
+ TestUtil.cxx
TestBug.cxx
TestHash.cxx
TestTS.cxx
TestVR.cxx
- TestUtil.cxx
+ TestDict.cxx
+ TestWriteSimple.cxx
+ TestSequence.cxx
+ TestDicomDirElement.cxx
TestDicomString.cxx
)
# add tests that require data
IF (GDCM_DATA_ROOT)
- SET(TEST_SOURCES ${TEST_SOURCES}
- TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
- PrintAllDocument.cxx # includes generated gdcmDataImages.h
- TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ TestFileAccessors.cxx
+ TestMakeIcon.cxx
+ TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
- PrintDicomDir.cxx
+ TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
+ TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
+ #TestCopyDicom.cxx # includes generated gdcmDataImages.h
+ TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
#TestChangeHeader.cxx
+ TestAnonymize.cxx
+ TestDirList.cxx
TestDicomDir.cxx # require DICOMDIR
- BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
- makeDicomDir.cxx # writes a file named "NewDICOMDIR"
- TestCopyDicom.cxx
- TestCopyRescaleDicom.cxx
+ TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
+ TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
+ TestSerieHelper.cxx # uses gdcmData as a default root directory
)
# add test that require VTK:
IF(GDCM_VTK)
INCLUDE_DIRECTORIES(
${GDCM_SOURCE_DIR}/vtk/
- )
+ )
SET(TEST_SOURCES ${TEST_SOURCES}
- ShowDicom.cxx
- )
+ VTKTestRead.cxx
+ VTKTestReadSeq.cxx
+ VTKTestWrite.cxx
+ VTKTestWriteSeq.cxx
+ )
ENDIF(GDCM_VTK)
ENDIF (GDCM_DATA_ROOT)
# Loop over files and create executables
FOREACH(file ${TEST_SOURCES})
GET_FILENAME_COMPONENT(name ${file} NAME_WE)
-# IF (GDCM_DATA_ROOT)
-# ADD_TEST(${name} ${GDCM_TESTS} ${name}
-# -D ${GDCM_DATA_ROOT}
-# -T ${GDCM_BINARY_DIR}/Testing/Temporary
-# -V Baseline/gdcm/${name}.png)
-# ELSE (GDCM_DATA_ROOT)
- ADD_TEST(${name} ${GDCM_TESTS} ${name})
-# ENDIF (GDCM_DATA_ROOT)
+ ADD_TEST(${name} ${GDCM_TESTS} ${name})
ENDFOREACH(file ${TEST_SOURCES})
#-----------------------------------------------------------------------------
"${GDCM_DATA_ROOT}/*.nema"
"${GDCM_DATA_ROOT}/*.ima"
)
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
+ "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+ "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+ "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+ "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+ )
ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
# Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
SET(GDCM_DATA_IMAGES_GLOB
${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
- #SET(GDCM_DATA_IMAGES_GLOB ${GDCM_DATA_IMAGES_GLOB_ACR})
+
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
+ "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
+ "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
+ "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
+ "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+ )
+ SET(GDCM_DATA_SEQ_IMAGES_GLOB
+ ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
+ ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
# Black list of images known to break lots of readers (efilm, xmedcon ...):
SET(BLACK_LIST
- # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
- "gdcm-JPEG-LossLessThoravision.dcm"
- # Mathieu: temporarily remove as it kills my gnome session (but not kde)
- # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
- # in memory)
- "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
+ # Multiframe Papyrus format image
+ # Just to remember this format exists, and is gdcm::File compliant
+ # (NOT gdcm::FileHelper ...)
+ # any contribution is welcome
+ "PET-cardio-Multiframe-Papyrus.dcm"
+ # From David Clunie's Compresion Dataset
+ "D_CLUNIE_CT1_JLSN.dcm"
+ "D_CLUNIE_CT1_JLSL.dcm"
+ "D_CLUNIE_CT1_J2KR.dcm"
+ "D_CLUNIE_CT1_J2KI.dcm"
)
-IF(APPLE)
- SET(BLACK_LIST ${BLACK_LIST}
- "SIEMENS_GBS_III-16-ACR_NEMA_1.acr" # This image contains a wrong length
- # Which led us to read pass the end of the file. This seg fault on MacOSX
- )
-ENDIF(APPLE)
+# Add a special test that requires dciodvfy from dicom3tools
+INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
# This is a GLOB expression, change it into a list separated with a comma and \n
SET(GDCM_DATA_IMAGES)
FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+ IF(DCIODVFY_FOUND)
+ ADD_TEST("Clunie-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
+ ENDIF(DCIODVFY_FOUND)
STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
IF(NOT bad_dicom)
SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
ENDIF(NOT bad_dicom)
ENDFOREACH(filename)
+SET(GDCM_DATA_SEQ_IMAGES)
+FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
+ GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+ STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
+ IF(NOT bad_dicom)
+ STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
+
+ SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
+ ENDIF(NOT bad_dicom)
+ENDFOREACH(filename)
+
# Populate GDCM_DATA_IMAGES:
FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
"const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
- )
+)
+
+# Populate GDCM_DATA_SEQ_IMAGES:
+FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
+ "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
+)