-#For later : rewrite this things for more consistencies, such as a 'FOREACH'
+# CMakeLists for Testing purpose
+# Cxx file that need a file to run should be place aproprietly
-#TODO:
-#http://www.cmake.org/pipermail/cmake/2001-November/002491.html
-#So that dll is copied to each subdir where needed
+SET(CXX_TEST_PATH ${EXECUTABLE_OUTPUT_PATH})
-LINK_LIBRARIES(gdcm)
+SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
+
+# add test that does not require data:
+# They usally return if no argument is given
+SET(TEST_SOURCES
+ TestBug.cxx
+ TestHash.cxx
+)
+
+# add tests that require data
+IF (GDCM_DATA_ROOT)
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
+ PrintAllDocument.cxx # includes generated gdcmDataImages.h
+ TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
+ TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
+ PrintDicomDir.cxx
+ TestChangeHeader.cxx
+ TestDicomDir.cxx # require DICOMDIR
+ # BuildUpDicomDir.cxx
+ # makeDicomDir.cxx
+ )
+ # add test that require VTK:
+ IF(GDCM_VTK)
+ INCLUDE_DIRECTORIES(
+ ${GDCM_SOURCE_DIR}/vtk/
+ )
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ ShowDicom.cxx
+ )
+ ENDIF(GDCM_VTK)
+ENDIF (GDCM_DATA_ROOT)
+
+
+
+# include stuff
INCLUDE_DIRECTORIES(
${GDCM_SOURCE_DIR}/src/
+ ${GDCM_BINARY_DIR}/
)
-SET(PrintHeader_SOURCES
- PrintHeader.cxx
-)
-ADD_EXECUTABLE(PrintHeader ${PrintHeader_SOURCES})
+CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
+ADD_EXECUTABLE(gdcmTests ${Tests})
+IF(GDCM_VTK)
+ TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
+ELSE(GDCM_VTK)
+ TARGET_LINK_LIBRARIES(gdcmTests gdcm)
+ENDIF(GDCM_VTK)
-SET(testWrite_SOURCES
- testWrite.cxx
-)
-ADD_EXECUTABLE(testWrite ${testWrite_SOURCES})
+SET (TestsToRun ${Tests})
+REMOVE (TestsToRun gdcmTests.cxx)
-SET(testChangeEntete_SOURCES
- testChangeEntete.cxx
-)
-ADD_EXECUTABLE(testChangeEntete ${testChangeEntete_SOURCES})
+# Loop over files and create executables
+FOREACH(file ${TEST_SOURCES})
+ GET_FILENAME_COMPONENT(name ${file} NAME_WE)
+# IF (GDCM_DATA_ROOT)
+# ADD_TEST(${name} ${GDCM_TESTS} ${name}
+# -D ${GDCM_DATA_ROOT}
+# -T ${GDCM_BINARY_DIR}/Testing/Temporary
+# -V Baseline/gdcm/${name}.png)
+# ELSE (GDCM_DATA_ROOT)
+ ADD_TEST(${name} ${GDCM_TESTS} ${name})
+# ENDIF (GDCM_DATA_ROOT)
+ENDFOREACH(file ${TEST_SOURCES})
-SET(hashtest_SOURCES
- hashtest.cxx
-)
-ADD_EXECUTABLE(hashtest ${hashtest_SOURCES})
+#-----------------------------------------------------------------------------
-SET(bug1_SOURCES
- bug1.cxx
-)
-ADD_EXECUTABLE(bug1 ${bug1_SOURCES})
+# We need to test the reading of all dicom images in the gdcmData directory
+# First parse this directory and extract all images
-SET(pourFindTaggs_SOURCES
- pourFindTaggs.cxx
-)
-ADD_EXECUTABLE(pourFindTaggs ${pourFindTaggs_SOURCES})
+IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB
+ "${GDCM_DATA_ROOT}/*.acr"
+ "${GDCM_DATA_ROOT}/*.dcm"
+ "${GDCM_DATA_ROOT}/*.nema"
+ "${GDCM_DATA_ROOT}/*.ima"
+ )
+ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
+ # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
+ "${GDCM_DATA_ROOT}/*.acr"
+ )
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
+ "${GDCM_DATA_ROOT}/*.dcm"
+ )
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
+ "${GDCM_DATA_ROOT}/*.nema"
+ )
+ FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
+ "${GDCM_DATA_ROOT}/*.ima"
+ )
+ SET(GDCM_DATA_IMAGES_GLOB
+ ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
+ ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
+ #SET(GDCM_DATA_IMAGES_GLOB ${GDCM_DATA_IMAGES_GLOB_ACR})
+ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
-SET(dcm2acr_SOURCES
- dcm2acr.cxx
-)
-ADD_EXECUTABLE(dcm2acr ${dcm2acr_SOURCES})
+# Black list of images known to break lots of readers (efilm, xmedcon ...):
+SET(BLACK_LIST
+ # serial killer
+ "gdcm-JPEG-LossLessThoravision.dcm"
+ #temporarily remove as it kills my gnome session (but not kde)
+ "cr172241.dcm"
+ #png looks ugly
+ "emptyImage.dcm"
+ #png looks ugly
+ "irmPhlipsNew1.dcm"
+ #png looks ugly
+ "mriThruVPRO.dcm"
+ #segfaults TestReadWriteReadCompare (same pb as below)
+ "gdcm-MR-SIEMENS-16-1.acr"
+ # see comments in gdcmData ref file TestAllEntryVerifyReference.txt
+ "SIEMENS_GBS_III-16-ACR_NEMA_1.acr"
+ #segfaults TestReadWriteReadCompare (pixels not parsed properly):
+ "I9000001.dcm"
+ "icone.dcm"
+ "sonataMonaco.dcm"
+ # Fails on TestAllReadCompareDicom at the RE-reading stage with message:
+ # Big trouble : Pixel Element (7fe0,10) NOT found
+ # The temporary file GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm
+ # stops after the first binEntry (binary entry) as can be seen with
+ # " gdcmbin/bin/PrintHeader
+ # GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm "
+ # and effectively the pixels are missing (as well as all the entries
+ # after tag 0029|1010)
+ # Note: this file was previously known as E00001S03I0015.dcm
+ "SIEMENS_Sonata-12-MONO2-SQ.dcm"
+ )
+
+# gdcm-ACR-LibIDO seems to be cut
+# test.acr is very bright
+
+# This is a GLOB expression, change it into a list separated with a comma and \n
+SET(GDCM_DATA_IMAGES)
+FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
+ GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+ STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
+ IF(NOT bad_dicom)
+ SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
+ ENDIF(NOT bad_dicom)
+ENDFOREACH(filename)
+
+# Populate GDCM_DATA_IMAGES:
+FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
+ "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
+ )
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff