# add test that does not require data:
# They usally return if no argument is given
SET(TEST_SOURCES
+ TestUtil.cxx
TestBug.cxx
TestHash.cxx
+ TestTS.cxx
+ TestVR.cxx
+ TestDictGroupName.cxx
+ TestDict.cxx
+ TestWriteSimple.cxx
+ TestImageSet.cxx
+ TestDicomDirElement.cxx
+ TestDicomString.cxx
)
# add tests that require data
IF (GDCM_DATA_ROOT)
- SET(TEST_SOURCES ${TEST_SOURCES}
- TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
- PrintAllDocument.cxx # includes generated gdcmDataImages.h
- TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ TestFileAccessors.cxx
+ TestMakeIcon.cxx
+ TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
- PrintDicomDir.cxx
+ TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
+ TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
+ #TestCopyDicom.cxx # includes generated gdcmDataImages.h
+ TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
#TestChangeHeader.cxx
+ TestAnonymize.cxx
+ TestDirList.cxx
TestDicomDir.cxx # require DICOMDIR
- BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
- makeDicomDir.cxx # writes a file named "NewDICOMDIR"
- TestCopyDicom.cxx
+ TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
+ TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
+ TestSerieHelper.cxx # uses gdcmData as a default root directory
)
# add test that require VTK:
IF(GDCM_VTK)
+ # Include the VTK library
+ INCLUDE(${VTK_USE_FILE})
+
INCLUDE_DIRECTORIES(
${GDCM_SOURCE_DIR}/vtk/
- )
+ )
SET(TEST_SOURCES ${TEST_SOURCES}
- ShowDicom.cxx
- )
+ VTKTestRead.cxx
+ VTKTestReadSeq.cxx
+ VTKTestWrite.cxx
+ VTKTestWriteSeq.cxx
+ )
ENDIF(GDCM_VTK)
ENDIF (GDCM_DATA_ROOT)
# Loop over files and create executables
FOREACH(file ${TEST_SOURCES})
GET_FILENAME_COMPONENT(name ${file} NAME_WE)
-# IF (GDCM_DATA_ROOT)
-# ADD_TEST(${name} ${GDCM_TESTS} ${name}
-# -D ${GDCM_DATA_ROOT}
-# -T ${GDCM_BINARY_DIR}/Testing/Temporary
-# -V Baseline/gdcm/${name}.png)
-# ELSE (GDCM_DATA_ROOT)
- ADD_TEST(${name} ${GDCM_TESTS} ${name})
-# ENDIF (GDCM_DATA_ROOT)
+ ADD_TEST(${name} ${GDCM_TESTS} ${name})
ENDFOREACH(file ${TEST_SOURCES})
#-----------------------------------------------------------------------------
"${GDCM_DATA_ROOT}/*.nema"
"${GDCM_DATA_ROOT}/*.ima"
)
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
+ "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+ "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+ "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+ "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+ )
ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
# Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
SET(GDCM_DATA_IMAGES_GLOB
${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
- #SET(GDCM_DATA_IMAGES_GLOB ${GDCM_DATA_IMAGES_GLOB_ACR})
+
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
+ "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
+ "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
+ "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+ )
+ FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
+ "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+ )
+ SET(GDCM_DATA_SEQ_IMAGES_GLOB
+ ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
+ ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
# Black list of images known to break lots of readers (efilm, xmedcon ...):
SET(BLACK_LIST
- # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
- "gdcm-JPEG-LossLessThoravision.dcm"
-
- # Mathieu: temporarily remove as it kills my gnome session (but not kde)
- # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
- # in memory)
- "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
-
- #segfaults TestReadWriteReadCompare (same pb as below) --> Fixed
- #segfaults ShowDicom
- "gdcm-MR-SIEMENS-16-1.acr"
-
- #Break ShowDicom
- "TestReadWriteReadCompare.dcm"
-
- # see comments in gdcmData ref file TestAllEntryVerifyReference.txt
- # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
- #"SIEMENS_GBS_III-16-ACR_NEMA_1.acr"
-
- # Frog 2004/07/29: segfaults TestReadWriteReadCompare (pixels not
- # parsed properly):
- # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
- # "GE_DLX-8-MONO2-Multiframe-Jpeg_Lossless.dcm"
-
- # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
- #"PICKER-16-MONO2-Nested_icon.dcm"
-
- # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
- #"SIEMENS_Sonata-16-MONO2-Value_Multiplicity.dcm"
-
- # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
- # Fails on TestAllReadCompareDicom at the RE-reading stage with message:
- # Big trouble : Pixel Element (7fe0,10) NOT found
- # The temporary file GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm
- # stops after the first binEntry (binary entry) as can be seen with
- # " gdcmbin/bin/PrintHeader
- # GDCMDATAHOME/BaselineDicom/SIEMENS_Sonata-12-MONO2-SQ.dcm "
- # and effectively the pixels are missing (as well as all the entries
- # after tag 0029|1010)
- # Note: this file was previously known as E00001S03I0015.dcm
- #"SIEMENS_Sonata-12-MONO2-SQ.dcm"
-
- # JPR 2004/20/09: doesn't break TestReadWriteReadCompare anymore
- # As of 14/09 this image creates a crash:
- # Program received signal SIGSEGV, Segmentation fault.
- # 0x4032bc4b in gdcmHeader::GetLUTRGBA (this=0x8149228)
- # at /home/malaterre/Creatis/gdcm/src/gdcmHeader.cxx:1170
- # 1170 *a = lutR[i*mult+1];
- "OT-PAL-8-face.dcm"
-
- # Files which won't break the test suite but whose png dump looks ugly.
- # JPR: png looks ugly. so What ? ctest compliant --> un-black listed
- # "THERALYS-12-MONO2-Uncompressed-E_Film_Template.dcm"
- # "PHILIPS_Gyroscan-8-MONO2-Odd_Sequence.dcm"
- # "PHILIPS_Gyroscan-12-MONO2-Jpeg_Lossless.dcm"
+ # Multiframe Papyrus format image
+ # Just to remember this format exists, and is gdcm::File compliant
+ # (NOT gdcm::FileHelper ...)
+ # any contribution is welcome
+ "PET-cardio-Multiframe-Papyrus.dcm"
+ # From David Clunie's Compresion Dataset
+ "D_CLUNIE_CT1_JLSN.dcm"
+ "D_CLUNIE_CT1_JLSL.dcm"
+ "D_CLUNIE_CT1_J2KR.dcm"
+ "D_CLUNIE_CT1_J2KI.dcm"
+ #Not a Dicom Image, but a RT Object
+ "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
+ #Temporary black list LibIDO rectangular images
+ "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
+ "gdcm-ACR-LibIDO.acr"
)
+# Add a special test that requires dciodvfy from dicom3tools
+INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
# This is a GLOB expression, change it into a list separated with a comma and \n
SET(GDCM_DATA_IMAGES)
FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+ IF(DCIODVFY_FOUND)
+ ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
+ ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
+ ENDIF(DCIODVFY_FOUND)
STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
IF(NOT bad_dicom)
SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
ENDIF(NOT bad_dicom)
ENDFOREACH(filename)
+SET(GDCM_DATA_SEQ_IMAGES)
+FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
+ GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+ STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
+ IF(NOT bad_dicom)
+ STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
+
+ SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
+ ENDIF(NOT bad_dicom)
+ENDFOREACH(filename)
+
# Populate GDCM_DATA_IMAGES:
FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
"const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
- )
+)
+
+# Populate GDCM_DATA_SEQ_IMAGES:
+FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
+ "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
+)
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff