Unblacklist KODAK-12-MONO1-Odd_Terminated_Sequence.dcm

[gdcm.git] / Testing / CMakeLists.txt

diff --git a/Testing/CMakeLists.txt b/Testing/CMakeLists.txt
index 011b9a3be5644fecac95404338d24cd9691d156a..60b1e913443f399a90eb768f085f8be48ebbc363 100644 (file)
--- a/Testing/CMakeLists.txt
+++ b/Testing/CMakeLists.txt
@@ -14,6 +14,7 @@ SET(TEST_SOURCES
   TestVR.cxx
   TestUtil.cxx
   TestDicomString.cxx
+  TestDict.cxx
 )
 
 # add tests that require data
@@ -23,13 +24,14 @@ IF (GDCM_DATA_ROOT)
     PrintAllDocument.cxx             # includes generated gdcmDataImages.h
     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
-    PrintDicomDir.cxx
     #TestChangeHeader.cxx
+    TestCopyDicom.cxx
+    TestCopyRescaleDicom.cxx
+    TestWriteSimple.cxx
     TestDicomDir.cxx                 # require DICOMDIR
     BuildUpDicomDir.cxx              # writes a file named "NewDICOMDIR"
     makeDicomDir.cxx                 # writes a file named "NewDICOMDIR"
-    TestCopyDicom.cxx
-    TestCopyRescaleDicom.cxx
+    TestDirList.cxx
   )
   # add test that require VTK:
   IF(GDCM_VTK)
@@ -41,6 +43,8 @@ IF (GDCM_DATA_ROOT)
       )
     SET(TEST_SOURCES ${TEST_SOURCES}
       ShowDicom.cxx
+      ShowDicomSeq.cxx
+      TestWriteWithVTK.cxx
       )
   ENDIF(GDCM_VTK)
 ENDIF (GDCM_DATA_ROOT)
@@ -89,6 +93,12 @@ IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
     "${GDCM_DATA_ROOT}/*.nema"
     "${GDCM_DATA_ROOT}/*.ima"
     )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
+    "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+    "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+    "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+    "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+    )
 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)   
   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
@@ -106,27 +116,41 @@ ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
   SET(GDCM_DATA_IMAGES_GLOB 
     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
-  #SET(GDCM_DATA_IMAGES_GLOB  ${GDCM_DATA_IMAGES_GLOB_ACR})
+
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
+    "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
+    "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
+    "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
+    "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+    )
+  SET(GDCM_DATA_SEQ_IMAGES_GLOB 
+    ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
+    ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)   
 
 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 SET(BLACK_LIST
   # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
-  "gdcm-JPEG-LossLessThoravision.dcm"
-  
+  #"gdcm-JPEG-LossLessThoravision.dcm"
+
   # Mathieu: temporarily remove as it kills my gnome session (but not kde)
   # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
   #      in memory)  
-  "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
+  #"KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
+  
+  # Multiframe Papyrus format image
+  # Just to remember this format exist, and is gdcm::Header compliant
+  # (NOT gdcm::File ...)
+  # any contribution is welcome
+  "PET-cardio-Multiframe-Papyrus.dcm" 
   )
 
-IF(APPLE)
-  SET(BLACK_LIST ${BLACK_LIST}
-    "SIEMENS_GBS_III-16-ACR_NEMA_1.acr"  # This image contains a wrong length
-    # Which led us to read pass the end of the file. This seg fault on MacOSX
-    )
-ENDIF(APPLE)
-
 # This is a GLOB expression, change it into a list separated with a comma and \n
 SET(GDCM_DATA_IMAGES)
 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
@@ -137,7 +161,23 @@ FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
   ENDIF(NOT bad_dicom)
 ENDFOREACH(filename)
 
+SET(GDCM_DATA_SEQ_IMAGES)
+FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
+  GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+  STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
+  IF(NOT bad_dicom)
+    STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
+
+    SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
+  ENDIF(NOT bad_dicom)
+ENDFOREACH(filename)
+
 # Populate GDCM_DATA_IMAGES:
 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n" 
   )
+
+# Populate GDCM_DATA_SEQ_IMAGES:
+FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
+  "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n" 
+  )