Unblacklist KODAK-12-MONO1-Odd_Terminated_Sequence.dcm

[gdcm.git] / Testing / CMakeLists.txt

diff --git a/Testing/CMakeLists.txt b/Testing/CMakeLists.txt
index 050d50c31a91af98b01d57d020f325b45089e36c..60b1e913443f399a90eb768f085f8be48ebbc363 100644 (file)
--- a/Testing/CMakeLists.txt
+++ b/Testing/CMakeLists.txt
@@ -10,6 +10,11 @@ SET(GDCM_TESTS ${CXX_TEST_PATH}/gdcmTests)
 SET(TEST_SOURCES
   TestBug.cxx
   TestHash.cxx
+  TestTS.cxx
+  TestVR.cxx
+  TestUtil.cxx
+  TestDicomString.cxx
+  TestDict.cxx
 )
 
 # add tests that require data
@@ -19,19 +24,27 @@ IF (GDCM_DATA_ROOT)
     PrintAllDocument.cxx             # includes generated gdcmDataImages.h
     TestAllReadCompareDicom.cxx      # includes generated gdcmDataImages.h
     TestAllEntryVerify.cxx           # includes generated gdcmDataImages.h
-    PrintDicomDir.cxx
-    TestChangeHeader.cxx
+    #TestChangeHeader.cxx
+    TestCopyDicom.cxx
+    TestCopyRescaleDicom.cxx
+    TestWriteSimple.cxx
     TestDicomDir.cxx                 # require DICOMDIR
-   # BuildUpDicomDir.cxx
-   # makeDicomDir.cxx
+    BuildUpDicomDir.cxx              # writes a file named "NewDICOMDIR"
+    makeDicomDir.cxx                 # writes a file named "NewDICOMDIR"
+    TestDirList.cxx
   )
   # add test that require VTK:
   IF(GDCM_VTK)
+    # Include the VTK library
+    INCLUDE(${VTK_USE_FILE})
+
     INCLUDE_DIRECTORIES(
       ${GDCM_SOURCE_DIR}/vtk/
       )
     SET(TEST_SOURCES ${TEST_SOURCES}
-      ShowDicom.cxx    
+      ShowDicom.cxx
+      ShowDicomSeq.cxx
+      TestWriteWithVTK.cxx
       )
   ENDIF(GDCM_VTK)
 ENDIF (GDCM_DATA_ROOT)
@@ -80,6 +93,12 @@ IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
     "${GDCM_DATA_ROOT}/*.nema"
     "${GDCM_DATA_ROOT}/*.ima"
     )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
+    "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+    "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+    "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+    "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+    )
 ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)   
   # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
   FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
@@ -97,36 +116,41 @@ ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
   SET(GDCM_DATA_IMAGES_GLOB 
     ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
     ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
-  #SET(GDCM_DATA_IMAGES_GLOB  ${GDCM_DATA_IMAGES_GLOB_ACR})
+
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
+    "${GDCM_DATA_ROOT}/*FileSeq0.acr"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
+    "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
+    "${GDCM_DATA_ROOT}/*FileSeq0.nema"
+    )
+  FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
+    "${GDCM_DATA_ROOT}/*FileSeq0.ima"
+    )
+  SET(GDCM_DATA_SEQ_IMAGES_GLOB 
+    ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
+    ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
 ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)   
 
 # Black list of images known to break lots of readers (efilm, xmedcon ...):
 SET(BLACK_LIST
-  # serial killer
-  "gdcm-JPEG-LossLessThoravision.dcm"
-  #temporarily remove as it kills my gnome session (but not kde)
-  "cr172241.dcm"
-  #png looks ugly
-  "emptyImage.dcm"
-  #png looks ugly
-  "irmPhlipsNew1.dcm"
-  #png looks ugly
-  "mriThruVPRO.dcm"
-  #segfaults TestReadWriteReadCompare (same pb as below) 
-  "gdcm-MR-SIEMENS-16-1.acr"
-  # see comments in gdcmData ref file TestAllEntryVerifyReference.txt
-  "SIEMENS_GBS_III-16-ACR_NEMA_1.acr"
-  #segfaults TestReadWriteReadCompare (pixels not parsed properly)
-  "I9000001.dcm"
-  # ditto
-  "icone.dcm"
-  # ditto
-  "sonataMonaco.dcm"
+  # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
+  #"gdcm-JPEG-LossLessThoravision.dcm"
+
+  # Mathieu: temporarily remove as it kills my gnome session (but not kde)
+  # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
+  #      in memory)  
+  #"KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
+  
+  # Multiframe Papyrus format image
+  # Just to remember this format exist, and is gdcm::Header compliant
+  # (NOT gdcm::File ...)
+  # any contribution is welcome
+  "PET-cardio-Multiframe-Papyrus.dcm" 
   )
 
-#   gdcm-ACR-LibIDO seems to be cut
-#   test.acr is very bright
-
 # This is a GLOB expression, change it into a list separated with a comma and \n
 SET(GDCM_DATA_IMAGES)
 FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
@@ -137,7 +161,23 @@ FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
   ENDIF(NOT bad_dicom)
 ENDFOREACH(filename)
 
+SET(GDCM_DATA_SEQ_IMAGES)
+FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
+  GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+  STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
+  IF(NOT bad_dicom)
+    STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
+
+    SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
+  ENDIF(NOT bad_dicom)
+ENDFOREACH(filename)
+
 # Populate GDCM_DATA_IMAGES:
 FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
   "const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n" 
   )
+
+# Populate GDCM_DATA_SEQ_IMAGES:
+FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
+  "const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n" 
+  )