# add test that does not require data:
# They usally return if no argument is given
SET(TEST_SOURCES
+ TestEmpty.cxx
+ TestUtil.cxx
TestBug.cxx
TestHash.cxx
+ TestCommand.cxx
TestTS.cxx
TestVR.cxx
- TestUtil.cxx
+ TestDictGroupName.cxx
+ TestDict.cxx
+ TestDataEntry.cxx
+ TestWriteSimple.cxx
+ TestImageSet.cxx
+ TestDicomDirElement.cxx
TestDicomString.cxx
+ TestEnumVR.cxx
+ TestBuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
)
+IF(UNIX OR WIN32)
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ TestInline.cxx
+ )
+ENDIF(UNIX OR WIN32)
# add tests that require data
IF (GDCM_DATA_ROOT)
- SET(TEST_SOURCES ${TEST_SOURCES}
- TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
- PrintAllDocument.cxx # includes generated gdcmDataImages.h
- TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
- TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ TestFileAccessors.cxx
+ TestMakeIcon.cxx
+ TestLoadAllDocumentsNoPrivNoSeq.cxx # includes generated gdcmDataImages.h
+ #TestLoadAllDocumentsNoShadow.cxx # includes generated gdcmDataImages.h
+ TestPrintAllDocument.cxx # includes generated gdcmDataImages.h
+ #TestAllEntryVerify.cxx # includes generated gdcmDataImages.h
+ #TestAllReadCompareDicom.cxx # includes generated gdcmDataImages.h
+ TestReadWriteReadCompare.cxx # includes generated gdcmDataImages.h
+ TestReadWriteJPEGReadCompare.cxx # includes generated gdcmDataImages.h
+ #TestReadWriteJPEG2000ReadCompare.cxx # includes generated gdcmDataImages.h
+
+ #TestCopyDicom.cxx # includes generated gdcmDataImages.h
+ # TestCopyRescaleDicom.cxx # includes generated gdcmDataImages.h
#TestChangeHeader.cxx
+ # TestAnonymize.cxx
+ TestDirList.cxx
TestDicomDir.cxx # require DICOMDIR
- BuildUpDicomDir.cxx # writes a file named "NewDICOMDIR"
- makeDicomDir.cxx # writes a file named "NewDICOMDIR"
- TestCopyDicom.cxx
- TestCopyRescaleDicom.cxx
- TestWriteSimple.cxx
+
+ TestMakeDicomDir.cxx # writes a file named "NewDICOMDIR"
+ TestSerieHelper.cxx # uses gdcmData as a default root directory
+ TestAllVM.cxx
+ TestValidate.cxx #Just to have on overviews of oddities ...
)
# add test that require VTK:
IF(GDCM_VTK)
- # Include the VTK library
- INCLUDE(${VTK_USE_FILE})
+
+ IF("${VTK_MAJOR_VERSION}" LESS 4)
+ MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !")
+ ELSE("${VTK_MAJOR_VERSION}" LESS 4)
+
+ IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
+ MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
+ "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
+ ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 2)
+ IF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
+ MESSAGE(FATAL_ERROR "This VTK version is not supported, you are on your own !"
+ "Although gdcm should compile fine. You just need to turn BUILD_TESTING:=OFF")
+ ENDIF("${VTK_MAJOR_VERSION}" EQUAL 4 AND "${VTK_MINOR_VERSION}" EQUAL 4 AND "${VTK_BUILD_VERSION}" LESS 3)
+
+ # Include the VTK library since we know this is going to work
+ INCLUDE(${VTK_USE_FILE})
- INCLUDE_DIRECTORIES(
- ${GDCM_SOURCE_DIR}/vtk/
+ INCLUDE_DIRECTORIES(
+ ${GDCM_SOURCE_DIR}/vtk
)
- SET(TEST_SOURCES ${TEST_SOURCES}
- ShowDicom.cxx
- ShowDicomSeq.cxx
- TestWriteWithVTK.cxx
+ SET(TEST_SOURCES ${TEST_SOURCES}
+ VTKTestRead.cxx
+ VTKTestReadSeq.cxx
+ VTKTestWrite.cxx
+ VTKTestWriteSeq.cxx
)
+ ENDIF("${VTK_MAJOR_VERSION}" LESS 4)
ENDIF(GDCM_VTK)
ENDIF (GDCM_DATA_ROOT)
# include stuff
INCLUDE_DIRECTORIES(
- ${GDCM_SOURCE_DIR}/src/
- ${GDCM_BINARY_DIR}/
+ ${GDCM_SOURCE_DIR}/src
+ ${GDCM_BINARY_DIR}
)
CREATE_TEST_SOURCELIST(Tests gdcmTests.cxx ${TEST_SOURCES})
ADD_EXECUTABLE(gdcmTests ${Tests})
IF(GDCM_VTK)
- TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
+ IF(GDCM_DATA_ROOT)
+ TARGET_LINK_LIBRARIES(gdcmTests vtkgdcm vtkRendering)
+ ELSE(GDCM_DATA_ROOT)
+ TARGET_LINK_LIBRARIES(gdcmTests gdcm)
+ ENDIF(GDCM_DATA_ROOT)
ELSE(GDCM_VTK)
TARGET_LINK_LIBRARIES(gdcmTests gdcm)
ENDIF(GDCM_VTK)
# Loop over files and create executables
FOREACH(file ${TEST_SOURCES})
GET_FILENAME_COMPONENT(name ${file} NAME_WE)
-# IF (GDCM_DATA_ROOT)
-# ADD_TEST(${name} ${GDCM_TESTS} ${name}
-# -D ${GDCM_DATA_ROOT}
-# -T ${GDCM_BINARY_DIR}/Testing/Temporary
-# -V Baseline/gdcm/${name}.png)
-# ELSE (GDCM_DATA_ROOT)
- ADD_TEST(${name} ${GDCM_TESTS} ${name})
-# ENDIF (GDCM_DATA_ROOT)
+ ADD_TEST(${name} ${GDCM_TESTS} ${name})
ENDFOREACH(file ${TEST_SOURCES})
#-----------------------------------------------------------------------------
# We need to test the reading of all dicom images in the gdcmData directory
# First parse this directory and extract all images
-IF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
- FILE(GLOB GDCM_DATA_IMAGES_GLOB
- "${GDCM_DATA_ROOT}/*.acr"
- "${GDCM_DATA_ROOT}/*.dcm"
- "${GDCM_DATA_ROOT}/*.nema"
- "${GDCM_DATA_ROOT}/*.ima"
- )
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB
- "${GDCM_DATA_ROOT}/*FileSeq0.acr"
- "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
- "${GDCM_DATA_ROOT}/*FileSeq0.nema"
- "${GDCM_DATA_ROOT}/*FileSeq0.ima"
- )
-ELSE(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
- # Since there is a bug in cmake 1.8.3, I'll have to do two separate globs
- FILE(GLOB GDCM_DATA_IMAGES_GLOB_ACR
- "${GDCM_DATA_ROOT}/*.acr"
- )
- FILE(GLOB GDCM_DATA_IMAGES_GLOB_DCM
- "${GDCM_DATA_ROOT}/*.dcm"
- )
- FILE(GLOB GDCM_DATA_IMAGES_GLOB_NEMA
- "${GDCM_DATA_ROOT}/*.nema"
- )
- FILE(GLOB GDCM_DATA_IMAGES_GLOB_IMA
- "${GDCM_DATA_ROOT}/*.ima"
- )
- SET(GDCM_DATA_IMAGES_GLOB
- ${GDCM_DATA_IMAGES_GLOB_DCM} ${GDCM_DATA_IMAGES_GLOB_ACR}
- ${GDCM_DATA_IMAGES_GLOB_NEMA} ${GDCM_DATA_IMAGES_GLOB_IMA})
-
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_ACR
- "${GDCM_DATA_ROOT}/*FileSeq0.acr"
- )
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_DCM
- "${GDCM_DATA_ROOT}/*FileSeq0.dcm"
- )
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_NEMA
- "${GDCM_DATA_ROOT}/*FileSeq0.nema"
- )
- FILE(GLOB GDCM_DATA_SEQ_IMAGES_GLOB_IMA
- "${GDCM_DATA_ROOT}/*FileSeq0.ima"
- )
- SET(GDCM_DATA_SEQ_IMAGES_GLOB
- ${GDCM_DATA_SEQ_IMAGES_GLOB_DCM} ${GDCM_DATA_SEQ_IMAGES_GLOB_ACR}
- ${GDCM_DATA_SEQ_IMAGES_GLOB_NEMA} ${GDCM_DATA_SEQ_IMAGES_GLOB_IMA})
-ENDIF(${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION} GREATER 1.9)
+FILE(GLOB GDCM_DATA_IMAGES_GLOB
+ "${GDCM_DATA_ROOT}/*.acr"
+ "${GDCM_DATA_ROOT}/*.dcm"
+ "${GDCM_DATA_ROOT}/*.nema"
+ "${GDCM_DATA_ROOT}/*.ima"
+ )
+
+FILE(GLOB GDCM_DATA_EXTRA_IMAGES_GLOB
+ "${GDCM_DATA_EXTRA_ROOT}/gdcmSampleData/images_of_interest/*.dcm"
+ )
+#MESSAGE(${GDCM_DATA_EXTRA_IMAGES_GLOB})
# Black list of images known to break lots of readers (efilm, xmedcon ...):
SET(BLACK_LIST
- # serial killer (also segfaults vtkgdcmViewer, but NOT PrintFile)
- "gdcm-JPEG-LossLessThoravision.dcm"
+ # Multiframe Papyrus format image
+ # Just to remember this format exists, and is gdcm::File compliant
+ # (NOT gdcm::FileHelper ...)
+ # any contribution is welcome
+ "PET-cardio-Multiframe-Papyrus.dcm"
+ # From David Clunie's Compresion Dataset
+ "D_CLUNIE_CT1_JLSN.dcm"
+ "D_CLUNIE_CT1_JLSL.dcm"
+ #Not a Dicom Image, but a RT Object
+ "RS2.16.124.113534.2.3.5.0.120040728.21342.353.12747_anonimized.dcm"
+ #Dicom MPEG image
+ "ETIAM_video_002.dcm"
+ #Something stupid occured in the code for LibIDO images.
+ #I Black list them for a while. JP
+ #"gdcm-ACR-LibIDO.acr"
+ "LIBIDO-24-ACR_NEMA-Rectangle.dcm"
+ #16 Bits per pixel images with LUT 16 Bits.
+ #I wait to be 100% sure before releasing them. JP
+ "rle16sti.dcm"
+ "rle16loo.dcm"
+ # Jasper cannot handle this image, only kakadu so far, unless you patch jasper
+ # but then it breaks other images...
+ "CT_Phillips_JPEG2K_Decompr_Problem.dcm"
+
+ #RTDOSE, 32 bits image : cannot be compressed
+ #"RTDOSE.dcm"
+
+ #
+ # ------------
+ #
+ #Still cause troubles (see the .README.txt file for more details)
+ "MR_Philips_Intera_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
+ "MR_Philips_Intera_PrivateSequenceExplicitVR.dcm"
+ #The 2 previous images are identical !
+ #--> Replaced by more significant name
+ "MR_Philips_Intera_PrivateSequenceExplicitVR_in_SQ_2001_e05f_item_wrong_lgt_use_NOSHADOWSEQ.dcm"
- # Mathieu: temporarily remove as it kills my gnome session (but not kde)
- # JPR: also breaks TestReadWriteReadCompare : Pixel differ (as expanded
- # in memory)
- "KODAK-12-MONO1-Odd_Terminated_Sequence.dcm"
+ #hexedit shows something *very* strange around offset 0x76e !
+ #the images looks *over*corrupted (on disc, not from the manufacturer!)
+ "MR_Philips_Intera_PrivateSequenceImplicitVR.dcm"
+
+ # Seems this one hangs on 64 bits processors ?!?
+ # I blacklist it until the pb is solved.
+ # (to get some more green on the Dasboards)
+ "MR_Philips-Intera_BreaksNOSHADOW.dcm"
+
+ # No way we'll ever be able to read that...
+ "ELSCINT1_LOSSLESS_RICE.dcm"
+
+ # Are we even be able to support our own bugs ?
+ "SIEMENS_MAGNETOM-12-MONO2-GDCM12-VRUN.dcm"
+ )
+
+# Create a specific list of dicom files that we know are part of a sequence
+SET(SEQ_LIST
+ "SIEMENS_MAGNETOM-12-MONO2-FileSeq[0-9].dcm"
)
+# Add a special test that requires dciodvfy from dicom3tools
+INCLUDE(${GDCM_SOURCE_DIR}/CMake/FindDicom3Tools.cmake)
+
# This is a GLOB expression, change it into a list separated with a comma and \n
SET(GDCM_DATA_IMAGES)
+SET(GDCM_DATA_SEQ_IMAGES)
FOREACH(filename ${GDCM_DATA_IMAGES_GLOB})
GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
+ IF(DCIODVFY_FOUND)
+ #ADD_TEST("DCIODVFY-INPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${filename}")
+ #ADD_TEST("DCIODVFY-OUTPUT-${filename_temp}" "${DCIODVFY_EXECUTABLE}" "${GDCM_DATA_ROOT}/BaselineDicom/${filename_temp}")
+ ENDIF(DCIODVFY_FOUND)
STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
IF(NOT bad_dicom)
SET(GDCM_DATA_IMAGES "${GDCM_DATA_IMAGES}\n\"${filename_temp}\",")
+ # SEQ_LIST is a regular expression:
+ STRING(REGEX MATCH ${SEQ_LIST} is_seq ${filename_temp})
+ IF(is_seq)
+ SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp}\",")
+ ENDIF(is_seq)
ENDIF(NOT bad_dicom)
ENDFOREACH(filename)
-SET(GDCM_DATA_SEQ_IMAGES)
-FOREACH(filename ${GDCM_DATA_SEQ_IMAGES_GLOB})
+# Paranoid / dcmdump
+IF(GDCM_DCMTK_CHECK)
+FOREACH(filename ${GDCM_DATA_IMAGES_GLOB} ${GDCM_DATA_EXTRA_IMAGES_GLOB})
GET_FILENAME_COMPONENT(filename_temp ${filename} NAME)
STRING(REGEX MATCH ${filename_temp} bad_dicom ${BLACK_LIST})
IF(NOT bad_dicom)
- STRING(REGEX REPLACE "(.*)FileSeq0(.*)" "\\1FileSeq%d\\2" filename_temp2 ${filename_temp})
-
- SET(GDCM_DATA_SEQ_IMAGES "${GDCM_DATA_SEQ_IMAGES}\n\"${filename_temp2}\",")
+ IF(BUILD_EXAMPLES)
+ FOREACH(mode a d x) #r
+ FOREACH(opt "" monochrome1 noshadowseq noshadow noseq rgb)
+ ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp} ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${filename} fileout=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} mode=${mode} ${opt})
+ ADD_TEST(dcmdump-${mode}-${opt}-${filename_temp} /usr/bin/dcmdump -E -dc +ae ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp})
+ #ADD_TEST(ReWrite-${mode}-${opt}-${filename_temp}-bis ${EXECUTABLE_OUTPUT_PATH}/ReWrite filein=${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} fileout=${GDCM_BINARY_DIR}/reference.dcm mode=${mode} ${opt})
+ #ADD_TEST(diff-${mode}-${opt}-${filename_temp} /usr/bin/diff ${GDCM_BINARY_DIR}/${mode}-${opt}-${filename_temp} ${GDCM_BINARY_DIR}/reference.dcm)
+ ENDFOREACH(opt)
+ ENDFOREACH(mode)
+ ENDIF(BUILD_EXAMPLES)
ENDIF(NOT bad_dicom)
ENDFOREACH(filename)
+ENDIF(GDCM_DCMTK_CHECK)
# Populate GDCM_DATA_IMAGES:
FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataImages.h"
"const char * const gdcmDataImages[] = { ${GDCM_DATA_IMAGES}\n0 };\n"
- )
+)
# Populate GDCM_DATA_SEQ_IMAGES:
FILE(WRITE "${GDCM_BINARY_DIR}/gdcmDataSeqImages.h"
"const char * const gdcmDataSeqImages[] = { ${GDCM_DATA_SEQ_IMAGES}\n0 };\n"
- )
+)
+
+#-----------------------------------------------------------------------------
+# Trying to solve a bizarre problem when loading shared lib if gdcm is static
+# Therefore I disable the test when building SHAREDLIBS
+IF(UNIX AND NOT BUILD_SHARED_LIBS)
+ ADD_LIBRARY(dynmodule MODULE dynmodule.cxx)
+ TARGET_LINK_LIBRARIES(dynmodule gdcm)
+ ADD_EXECUTABLE(loadmodule loadmodule.cxx )
+ TARGET_LINK_LIBRARIES(loadmodule gdcm -ldl)
+ ADD_TEST(loadmodule ${CXX_TEST_PATH}/loadmodule)
+ENDIF(UNIX AND NOT BUILD_SHARED_LIBS)
+
+
+#-----------------------------------------------------------------------------
+# Do the build against an installed gdcm
+SET(GDCM_TEST_INSTALL_LEFT "${CMAKE_INSTALL_PREFIX}")
+SET(GDCM_TEST_INSTALL_RIGHT "${GDCM_BINARY_DIR}/InstallTest/Root")
+STRING(COMPARE EQUAL "${GDCM_TEST_INSTALL_LEFT}" "${GDCM_TEST_INSTALL_RIGHT}"
+ GDCM_TEST_INSTALL)
+IF(GDCM_TEST_INSTALL)
+ ADD_TEST(Install
+ ${CMAKE_CTEST_COMMAND}
+ # ${GDCM_INSTALL_TEST_CONFIG_TYPE}
+ --build-and-test ${CMAKE_SOURCE_DIR} ${CMAKE_BINARY_DIR}
+ --build-generator ${CMAKE_GENERATOR}
+ --build-project GDCM
+ --build-makeprogram ${CMAKE_MAKE_PROGRAM}
+ --build-noclean
+ --build-target install)
+ENDIF(GDCM_TEST_INSTALL)
+