+/*=========================================================================
+
+ Program: gdcm
+ Module: $RCSfile: TestCopyDicom.cxx,v $
+ Language: C++
+ Date: $Date: 2005/01/20 16:16:59 $
+ Version: $Revision: 1.32 $
+
+ Copyright (c) CREATIS (Centre de Recherche et d'Applications en Traitement de
+ l'Image). All rights reserved. See Doc/License.txt or
+ http://www.creatis.insa-lyon.fr/Public/Gdcm/License.html for details.
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the above copyright notices for more information.
+
+=========================================================================*/
#include "gdcmHeader.h"
-#include "gdcmFile.h"
-#include "gdcmDocument.h"
+#include "gdcmFileHelper.h"
#include "gdcmValEntry.h"
#include "gdcmBinEntry.h"
#ifndef _WIN32
#include <unistd.h> //for access, unlink
+#else
+#include <io.h> //for _access on Win32
#endif
// return true if the file exists
return unlink(source) != 0 ? false : true;
}
-// Here we load a gdcmFile and then try to create from scratch a copy of it,
-// copying field by field the dicom image
-
-int TestCopyDicom(int , char* [])
+int CopyDicom(std::string const & filename,
+ std::string const & output )
{
- int i =0;
- int retVal = 0; //by default this is an error
- while( gdcmDataImages[i] != 0 )
- {
- std::string filename = GDCM_DATA_ROOT;
- filename += "/"; //doh!
- filename += gdcmDataImages[i];
- std::cerr << "Filename: " << filename << std::endl;
-
- std::string output = "../Testing/Temporary/output.dcm";
-
+ std::cout << " Testing: " << filename << std::endl;
if( FileExists( output.c_str() ) )
{
- // std::cerr << "Don't try to cheat, I am removing the file anyway" << std::endl;
if( !RemoveFile( output.c_str() ) )
{
- std::cerr << "Ouch, the file exist, but I cannot remove it" << std::endl;
+ std::cout << "Ouch, the file exist, but I cannot remove it" << std::endl;
return 1;
}
}
- gdcmFile *original = new gdcmFile( filename );
- gdcmFile *copy = new gdcmFile( output );
-
- TagDocEntryHT & Ht = original->GetHeader()->GetEntry();
-
- size_t dataSize = original->GetImageDataSize();
- void *imageData = original->GetImageData();
+ //////////////// Step 1:
+ std::cout << " 1...";
+ gdcm::Header *originalH = new gdcm::Header( filename );
+ gdcm::Header *copyH = new gdcm::Header( );
//First of all copy the header field by field
// Warning :Accessor gdcmElementSet::GetEntry() should not exist
// It was commented out by Mathieu, that was a *good* idea
- // (the user does NOT have to know the way we implemented the Header !)
- // Waiting for a 'clean' solution, I keep the method ...JPRx
- gdcmDocEntry* d;
-
- for (TagDocEntryHT::iterator tag = Ht.begin(); tag != Ht.end(); ++tag)
+ //////////////// Step 2:
+ std::cout << "2...";
+ gdcm::DocEntry* d=originalH->GetFirstEntry();
+ while(d)
{
- d = tag->second;
- if ( gdcmBinEntry* b = dynamic_cast<gdcmBinEntry*>(d) )
- {
- copy->GetHeader()->ReplaceOrCreateByNumber(
- b->GetVoidArea(),
+ if ( gdcm::BinEntry* b = dynamic_cast<gdcm::BinEntry*>(d) )
+ {
+ copyH->ReplaceOrCreate(
+ b->GetBinArea(),
b->GetLength(),
b->GetGroup(),
b->GetElement(),
b->GetVR() );
}
- else if ( gdcmValEntry* v = dynamic_cast<gdcmValEntry*>(d) )
+ else if ( gdcm::ValEntry* v = dynamic_cast<gdcm::ValEntry*>(d) )
{
- copy->GetHeader()->ReplaceOrCreateByNumber(
+ copyH->ReplaceOrCreate(
v->GetValue(),
v->GetGroup(),
v->GetElement(),
else
{
// We skip pb of SQ recursive exploration
- //std::cout << "Skipped Sequence "
- // << "------------- " << d->GetVR() << " "<< std::hex
- // << d->GetGroup() << " " << d->GetElement()
- // << std::endl;
}
+
+ d=originalH->GetNextEntry();
}
+ gdcm::FileHelper *original = new gdcm::FileHelper( originalH );
+ gdcm::FileHelper *copy = new gdcm::FileHelper( copyH );
+
+ size_t dataSize = original->GetImageDataSize();
+ uint8_t* imageData = original->GetImageData();
+
+ // Useless to set the image datas, because it's already made when
+ // copying the corresponding BinEntry that contains the pixel datas
copy->SetImageData(imageData, dataSize);
- original->GetHeader()->SetImageDataSize(dataSize);
- copy->WriteDcmExplVR( output );
+ //////////////// Step 3:
+ std::cout << "3...";
+ copy->SetWriteModeToRGB();
+ if( !copy->WriteDcmExplVR(output) )
+ {
+ std::cout << " Failed" << std::endl
+ << " " << output << " not written" << std::endl;
+
+ delete original;
+ delete copy;
+ delete originalH;
+ delete copyH;
+
+ return 1;
+ }
- delete original;
delete copy;
+ delete copyH;
- copy = new gdcmFile( output );
+ //////////////// Step 4:
+ std::cout << "4...";
+ copy = new gdcm::FileHelper( output );
//Is the file written still gdcm parsable ?
if ( !copy->GetHeader()->IsReadable() )
{
- retVal +=1;
- std::cout << output << " Failed" << std::endl;
+ std::cout << " Failed" << std::endl
+ << " " << output << " not readable" << std::endl;
+
+ delete original;
+ delete originalH;
+
+ return 1;
+ }
+
+ //////////////// Step 5:
+ std::cout << "5...";
+ size_t dataSizeWritten = copy->GetImageDataSize();
+ uint8_t* imageDataWritten = copy->GetImageData();
+
+ if (dataSize != dataSizeWritten)
+ {
+ std::cout << " Failed" << std::endl
+ << " Pixel areas lengths differ: "
+ << dataSize << " # " << dataSizeWritten << std::endl;
+
+ delete original;
+ delete copy;
+ delete originalH;
+
+ return 1;
}
+
+ if (int res = memcmp(imageData, imageDataWritten, dataSize) !=0)
+ {
+ (void)res;
+ std::cout << " Failed" << std::endl
+ << " Pixel differ (as expanded in memory)." << std::endl;
+
+ delete original;
+ delete copy;
+ delete originalH;
+
+ return 1;
+ }
+ std::cout << "OK." << std::endl ;
+
+ delete original;
+ delete copy;
+ delete originalH;
+
+ return 0;
+}
+
+// Here we load a gdcmFile and then try to create from scratch a copy of it,
+// copying field by field the dicom image
+
+int TestCopyDicom(int argc, char* argv[])
+{
+ if ( argc == 3 )
+ {
+ // The test is specified a specific filename, use it instead of looping
+ // over all images
+ const std::string input = argv[1];
+ const std::string reference = argv[2];
+ return CopyDicom( input, reference );
+ }
+ else if ( argc > 3 || argc == 2 )
+ {
+ std::cout << " Usage: " << argv[0]
+ << " (no arguments needed)." << std::endl;
+ std::cout << "or Usage: " << argv[0]
+ << " filename.dcm reference.dcm" << std::endl;
+ return 1;
+ }
+ // else other cases:
+
+ std::cout << " Description (Test::TestCopyDicom): "
+ << std::endl;
+ std::cout << " For all images in gdcmData (and not blacklisted in "
+ "Test/CMakeLists.txt)"
+ << std::endl;
+ std::cout << " apply the following to each filename.xxx: "
+ << std::endl;
+ std::cout << " step 1: parse the image (as gdcmHeader) and call"
+ << " IsReadable(). After that, call GetImageData() and "
+ << "GetImageDataSize() "
+ << std::endl;
+ std::cout << " step 2: create a copy of the readed file and the new"
+ << " pixel datas are set to the copy"
+ << std::endl;
+ std::cout << " step 3: write the copy of the image"
+ << std::endl;
+ std::cout << " step 4: read the copy and call IsReadable()"
+ << std::endl;
+ std::cout << " step 5: compare (in memory with memcmp) that the two "
+ << "images " << std::endl
+ << " match (as expanded by gdcm)." << std::endl;
+ std::cout << std::endl;
+
+ int i =0;
+ int retVal = 0; //by default this is an error
+ while( gdcmDataImages[i] != 0 )
+ {
+ std::string filename = GDCM_DATA_ROOT;
+ filename += "/"; //doh!
+ filename += gdcmDataImages[i];
+
+ std::string output = "output.dcm";
+
+ if( CopyDicom( filename, output ) != 0 )
+ {
+ retVal++;
+ }
+
i++;
}
return retVal;
git://git.creatis.insa-lyon.fr / gdcm.git / blobdiff