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[FrontAlgorithms.git] / appli / CTBronchi / Mori.h

diff --git a/appli/CTBronchi/Mori.h b/appli/CTBronchi/Mori.h
new file mode 100644 (file)
index 0000000..a228fa5
--- /dev/null
+++ b/appli/CTBronchi/Mori.h
@@ -0,0 +1,85 @@
+// =========================================================================
+// @author Leonardo Florez Valencia
+// @email florez-l@javeriana.edu.co
+// =========================================================================
+#ifndef __CTBronchi__Mori__h__
+#define __CTBronchi__Mori__h__
+
+#include <map>
+#include <CTBronchi/Functions.h>
+#include <fpa/Filters/Image/Mori.h>
+
+namespace CTBronchi
+{
+  // -----------------------------------------------------------------------
+  template< class _TInputPtr, class _TOutputPtr >
+  void Mori(
+    _TOutputPtr& output, const _TInputPtr& input,
+    const std::map< std::string, std::string >& args
+    )
+  {
+    typedef typename _TInputPtr::ObjectType  _TInput;
+    typedef typename _TOutputPtr::ObjectType _TOutput;
+    typedef fpa::Filters::Image::Mori< _TInput, _TOutput > _TMori;
+    typedef typename _TInput::PixelType _TInputPixel;
+
+    typename _TMori::Pointer mori = _TMori::New( );
+    mori->SetInput( input );
+    mori->SetSeed( global_seed );
+    mori->SetInsideValue( inside_value );
+    mori->SetOutsideValue( outside_value );
+    mori->SetMinimumThreshold(
+      _TInputPixel( std::atof( args[ "mori_minimum_threshold" ].c_str( ) ) )
+      );
+    mori->SetSignalKernelSize(
+      std::atoi( args[ "mori_signal_kernel_size" ].c_str( ) )
+      );
+    mori->SetSignalThreshold(
+      std::atof( args[ "mori_signal_threshold" ].c_str( ) )
+      );
+    mori->SetSignalInfluence(
+      std::atof( args[ "mori_signal_influence" ].c_str( ) )
+      );
+    mori->SetThresholds(
+      _TInputPixel( std::atof( args[ "mori_lower_threshold" ].c_str( ) ) ),
+      _TInputPixel( std::atof( args[ "mori_upper_threshold" ].c_str( ) ) ),
+      _TInputPixel( std::atof( args[ "mori_delta_threshold" ].c_str( ) ) )
+      );
+    double t = CTBronchi::MeasureTime( mori );
+    std::cout << "Mori executed in " << t << " s" << std::endl;
+    output = mori->GetOutput( );
+
+    std::map< std::string, std::string >::const_iterator i =
+      args.find( "out_mori" );
+    if( i != args.end( ) )
+      CTBronchi::WriteImage( output, i->second );
+
+    i = args.find( "out_signal" );
+    if( i != args.end( ) )
+    {
+      std::stringstream signal;
+      unsigned long nthr = mori->GetNumberOfEvaluatedThresholds( );
+      signal << "# nThr = " << nthr << std::endl;
+      signal << "# Opt  = " << mori->GetOptimumThreshold( ) << std::endl;
+      for( unsigned long j = 0; j < nthr; ++j )
+      {
+        typename _TMori::TPeak p;
+        double x, y;
+        mori->GetSignalValues( j, x, y, p );
+        signal << x << " " << y << std::endl;
+
+      } // rof
+
+      std::ofstream signals_str( i->second.c_str( ) );
+      signals_str << signal.str( );
+      signals_str.close( );
+
+    } // fi
+    output->DisconnectPipeline( );
+  }
+
+} // ecapseman
+
+#endif // __CTBronchi__Functions__h__
+
+// eof - $RCSfile$