// @author Leonardo Florez Valencia
// @email florez-l@javeriana.edu.co
// =========================================================================
-
#ifndef __CTBronchi__MoriLabelling__h__
#define __CTBronchi__MoriLabelling__h__
-/* TODO
- #include <fpa/Base/RegionGrow.h>
- #include <fpa/Base/MarksInterface.h>
- #include <fpa/Base/Functors/RegionGrow/BinaryThreshold.h>
- #include <fpa/Image/Algorithm.h>
- #include <fpa/Image/DefaultTraits.h>
- #include <fpa/Image/LabelledSeedsInterface.h>
-*/
+#include <fpa/Filters/BaseMarksInterface.h>
+#include <fpa/Filters/Image/SeedsFromLabelsInterface.h>
+#include <fpa/Filters/Image/DefaultTraits.h>
+#include <fpa/Filters/Image/RegionGrow.h>
+#include <fpa/Functors/RegionGrow/BinaryThreshold.h>
namespace CTBronchi
{
/**
*/
- /* TODO
- template< class _TInputImage, class _TLabelImage, class _TTraits = fpa::Image::DefaultTraits< _TInputImage, _TLabelImage, typename _TLabelImage::PixelType > >
- class MoriLabelling
- : public fpa::Base::RegionGrow< fpa::Image::Algorithm< _TTraits, fpa::Base::MarksInterface< _TTraits >, fpa::Image::LabelledSeedsInterface< _TTraits > > >
- {
- public:
- typedef _TInputImage TInputImage;
- typedef _TLabelImage TLabelImage;
- typedef _TTraits TTraits;
- fpa_Base_TraitTypes( typename TTraits );
-
- typedef fpa::Base::MarksInterface< TTraits > TMarksInterface;
- typedef fpa::Image::LabelledSeedsInterface< TTraits > TSeedsInterface;
- typedef fpa::Image::Algorithm< TTraits, TMarksInterface, TSeedsInterface > TAlgorithm;
-
- typedef MoriLabelling Self;
- typedef fpa::Base::RegionGrow< TAlgorithm > Superclass;
- typedef itk::SmartPointer< Self > Pointer;
- typedef itk::SmartPointer< const Self > ConstPointer;
-
- typedef fpa::Base::Functors::RegionGrow::BinaryThreshold< TInputValue > TThresholdFunction;
-
- public:
- itkNewMacro( Self );
- itkTypeMacro( MoriLabelling, fpa::Base::RegionGrow );
-
- itkGetConstMacro( InsideLabel, TOutputValue );
- itkSetMacro( InsideLabel, TOutputValue );
-
- public:
- const TLabelImage* GetInputLabelImage( ) const;
- void SetInputLabelImage( TLabelImage* image );
-
- const TInputImage* GetInputRawImage( ) const;
- void SetInputRawImage( TInputImage* image );
+ template< class _TImage, class _TLabels >
+ class MoriLabellingTraits
+ : public fpa::Filters::Image::DefaultTraits< _TImage, _TLabels, typename _TLabels::PixelType >
+ {
+ public:
+ typedef fpa::Filters::Image::DefaultTraits< _TImage, _TLabels, typename _TLabels::PixelType > Superclass;
+ typedef typename Superclass::TInternalTraits TInternalTraits;
+ typedef typename Superclass::TMarksImage TMarksImage;
+ typedef typename Superclass::TFilterInterface TFilterInterface;
+
+ typedef fpa::Filters::BaseMarksInterface< TInternalTraits > TMarksInterface;
+ typedef fpa::Filters::Image::SeedsFromLabelsInterface< TInternalTraits > TSeedsInterface;
+ };
- TInputValue GetUpperThreshold( ) const;
- void SetUpperThreshold( TInputValue t );
-
- TOutputValue GetOutsideValue( ) const;
- void SetOutsideLabel( TOutputValue o );
-
- protected:
- MoriLabelling( );
- virtual ~MoriLabelling( );
-
- virtual TNodes _UnifySeeds( ) override;
- virtual void _UpdateOutputValue( TNode& n ) override;
-
- private:
- // Purposely not implemented.
- MoriLabelling( const Self& other );
- Self& operator=( const Self& other );
-
- protected:
- TOutputValue m_InsideLabel;
- };
- */
+ /**
+ */
+ template< class _TImage, class _TLabels, class _TScalarImage >
+ class MoriLabelling
+ : public fpa::Filters::Image::RegionGrow< _TImage, _TLabels, typename _TLabels::PixelType, CTBronchi::MoriLabellingTraits< _TImage, _TLabels > >
+ {
+ public:
+ typedef CTBronchi::MoriLabellingTraits< _TImage, _TLabels > TTraits;
+ fpaTraitsMacro( typename TTraits );
+
+ typedef fpa::Filters::Image::RegionGrow< _TImage, _TLabels, TMark, TTraits > Superclass;
+ typedef MoriLabelling Self;
+ typedef itk::SmartPointer< Self > Pointer;
+ typedef itk::SmartPointer< const Self > ConstPointer;
+
+ typedef fpa::Functors::RegionGrow::BinaryThreshold< TInputValue > TFunctor;
+
+ public:
+ itkNewMacro( Self );
+ itkTypeMacro( MoriLabelling, fpa::Filters::Image::RegionGrow );
+
+ itkGetConstMacro( VesselnessThreshold, double );
+ itkSetMacro( VesselnessThreshold, double );
+
+ itkGetConstMacro( UpperThreshold, TInputValue );
+ itkSetMacro( UpperThreshold, TInputValue );
+
+ ivqITKInputMacro( InputLabels, _TLabels );
+ ivqITKInputMacro( InputVesselness, _TScalarImage );
+
+ protected:
+ MoriLabelling( )
+ : Superclass( ),
+ m_VesselnessThreshold( 0.05 ),
+ m_UpperThreshold( -650 )
+ {
+ ivqITKInputConfigureMacro( InputLabels, _TLabels );
+ ivqITKInputConfigureMacro( InputVesselness, _TScalarImage );
+ this->m_Functor = TFunctor::New( );
+ this->SetPredicate( this->m_Functor );
+ }
+
+ virtual ~MoriLabelling( )
+ {
+ }
+
+ private:
+ // Purposely not implemented.
+ MoriLabelling( const Self& other );
+ Self& operator=( const Self& other );
+
+ protected:
+ typename TFunctor::Pointer m_Functor;
+ double m_VesselnessThreshold;
+ TInputValue m_UpperThreshold;
+ };
} // ecapseman
-#ifndef ITK_MANUAL_INSTANTIATION
-# include <CTBronchi/MoriLabelling.hxx>
-#endif // ITK_MANUAL_INSTANTIATION
-
-#endif // __CTBronchi__MoriLabelling__h__
+#endif // __CTBronchi__Functions__h__
// eof - $RCSfile$