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[FrontAlgorithms.git] / appli / CTBronchi / Process.sh

diff --git a/appli/CTBronchi/Process.sh b/appli/CTBronchi/Process.sh
index 5f4220241880dff433df891707f02219dc832a80..aa98891486317c2f2876e580030999846f69c7d5 100755 (executable)
--- a/appli/CTBronchi/Process.sh
+++ b/appli/CTBronchi/Process.sh
@@ -2,7 +2,7 @@
 
 ## -- Command line options
 curr_dir=`dirname $0`
-ext="mhd"
+ext="mha"
 vesselness_sigma="0.5"
 vesselness_alpha1="0.5"
 vesselness_alpha2="2"
@@ -122,7 +122,8 @@ fastrw=$base_name"_fastrw.$ext"
 slicerw=$base_name"_slicerw.$ext"
 skeleton_fastrw=$base_name"_fastrw_skeleton.txt"
 skeleton_slicerw=$base_name"_slicerw_skeleton.txt"
-points=$base_name"_points.txt"
+fastrw_points=$base_name"_fastrw_points.txt"
+slicerw_points=$base_name"_slicerw_points.txt"
 
 echo "************************************************"
 (>&2 echo "Processing $input... ")
@@ -182,9 +183,17 @@ if [ ! -f $skeleton_slicerw ] || [ -n "$force" ] ; then
     $curr_dir/fpa_CTBronchi_Skeleton \
         -i $slicerw \
         -o $skeleton_slicerw \
-        -e $points \
+        -e $slicerw_points \
         -p "$seed"
 fi
+
+# if [ ! -f $skeleton_fastrw ] || [ -n "$force" ] ; then
+#     $curr_dir/fpa_CTBronchi_Skeleton \
+#         -i $fastrw \
+#         -o $skeleton_fastrw \
+#         -e $fastrw_points \
+#         -p "$seed"
+# fi
 (>&2 echo "done.")
 echo "done."
 echo "************************************************"