+/*# ---------------------------------------------------------------------
+#
+# Copyright (c) CREATIS (Centre de Recherche en Acquisition et Traitement de l'Image
+# pour la Sant�)
+# Authors : Eduardo Davila, Frederic Cervenansky, Claire Mouton
+# Previous Authors : Laurent Guigues, Jean-Pierre Roux
+# CreaTools website : www.creatis.insa-lyon.fr/site/fr/creatools_accueil
+#
+# This software is governed by the CeCILL-B license under French law and
+# abiding by the rules of distribution of free software. You can use,
+# modify and/ or redistribute the software under the terms of the CeCILL-B
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+# or in the file LICENSE.txt.
+#
+# As a counterpart to the access to the source code and rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty and the software's author, the holder of the
+# economic rights, and the successive licensors have only limited
+# liability.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL-B license and that you accept its terms.
+# ------------------------------------------------------------------------ */
+
#include "bbmaracasvisuAxeVolume.h"
#include "bbcreaMaracasVisuPackage.h"
+
+#include "creaVtk_MACROS.h"
+
namespace bbcreaMaracasVisu
{
+
BBTK_ADD_BLACK_BOX_TO_PACKAGE(creaMaracasVisu,AxeVolume)
BBTK_BLACK_BOX_IMPLEMENTATION(AxeVolume,bbtk::AtomicBlackBox);
-void AxeVolume::Process()
+
+int AxeVolume::GetTypeFormat( std::string formatStr , vtkImageData* image )
{
- if ( mimage!=NULL )
- {
- mimage->Delete();
+ int outputformat = VTK_UNSIGNED_CHAR;
+ if (formatStr=="SAME")
+ {
+ if (image!=NULL) outputformat = image->GetScalarType();
}
+ else if (formatStr=="VTK_BIT") outputformat = VTK_BIT; // 1
+ else if (formatStr=="VTK_CHAR") outputformat = VTK_CHAR; // 2
+ else if (formatStr=="VTK_SIGNED_CHAR") outputformat = VTK_SIGNED_CHAR; // 15
+ else if (formatStr=="VTK_UNSIGNED_CHAR") outputformat = VTK_UNSIGNED_CHAR; // 3
+ else if (formatStr=="VTK_SHORT") outputformat = VTK_SHORT; // 4
+ else if (formatStr=="VTK_UNSIGNED_SHORT") outputformat = VTK_UNSIGNED_SHORT; // 5
+ else if (formatStr=="VTK_INT") outputformat = VTK_INT; // 6
+ else if (formatStr=="VTK_UNSIGNED_INT") outputformat = VTK_UNSIGNED_INT; // 7
+ else if (formatStr=="VTK_LONG") outputformat = VTK_LONG; // 8
+ else if (formatStr=="VTK_UNSIGNED_LONG") outputformat = VTK_UNSIGNED_LONG; // 9
+ else if (formatStr=="VTK_FLOAT") outputformat = VTK_FLOAT; // 10
+ else if (formatStr=="VTK_DOUBLE") outputformat = VTK_DOUBLE; // 11
+ else if (formatStr=="MET_CHAR") outputformat = VTK_CHAR; // 2
+ else if (formatStr=="MET_UCHAR") outputformat = VTK_UNSIGNED_CHAR; // 3
+ else if (formatStr=="MET_SHORT") outputformat = VTK_SHORT; // 4
+ else if (formatStr=="MET_USHORT") outputformat = VTK_UNSIGNED_SHORT; // 5
+ else if (formatStr=="MET_SHORT") outputformat = VTK_SHORT; // 4
+ else if (formatStr=="MET_FLOAT") outputformat = VTK_FLOAT; // 10
+ else if (formatStr=="MET_DOUBLE") outputformat = VTK_DOUBLE; // 11
+
+ return outputformat;
+}
- int ext[6];
- bbGetInputIn()->GetExtent(ext);
- int sizeX=ext[1]-ext[0];
- int sizeY=ext[3]-ext[2];
- int sizeZ=ext[5]-ext[4];
-
- mimage = vtkImageData::New();
- mimage->SetDimensions(sizeX,sizeY,sizeZ);
- mimage->SetOrigin(0,0,0);
- mimage->SetExtent( 0 , sizeX-1 , 0 , sizeY-1 , 0, sizeZ-1 );
- mimage->SetWholeExtent( 0 , sizeX-1 , 0 , sizeY-1 , 0, sizeZ-1 );
- mimage->SetScalarTypeToUnsignedShort();
- mimage->AllocateScalars();
-
-
- int i,j,k;
- int sizeLstPointR = bbGetInputlstPointR().size();
- int iAxe,sizeAxe=bbGetInputlstPointX().size();
- double rx,ry,rz;
- double r,rr;
- unsigned short *p;
- int sizeImage = sizeX*sizeY*sizeZ;
- double px,py,pz,px1,py1,pz1,px2,py2,pz2;
-
- // Clean image
- p = (unsigned short*)mimage->GetScalarPointer (0, 0, 0);
- for ( i=0 ; i<sizeImage ; i++)
- {
- *p = 0;
- p++;
- }
- for (iAxe=0 ; iAxe<sizeAxe; iAxe++)
- {
- if (sizeLstPointR<iAxe)
+void AxeVolume::Process()
+{
+ if (bbGetInputIn()!=NULL)
+ {
+ if ( mimage!=NULL )
{
- r = bbGetInputlstPointR()[ bbGetInputlstPointR().size() ];
- } else {
- r = bbGetInputlstPointR()[ iAxe ];
+ mimage->Delete();
}
- px = bbGetInputlstPointX()[iAxe];
- py = bbGetInputlstPointY()[iAxe];
- pz = bbGetInputlstPointZ()[iAxe];
- px1 = px - r;
- py1 = py - r;
- pz1 = pz - r;
- px2 = px + r;
- py2 = py + r;
- pz2 = pz + r;
-
- for ( i=px1 ; i<=px2 ; i++ )
- {
- for ( j=py1 ; j<py2 ; j++ )
+
+ int ext[6];
+ bbGetInputIn()->GetExtent(ext);
+ int sizeX=ext[1]-ext[0]+1;
+ int sizeY=ext[3]-ext[2]+1;
+ int sizeZ=ext[5]-ext[4]+1;
+
+ double spc[3];
+ bbGetInputIn()->GetSpacing(spc);
+ double invSpc[3];
+ invSpc[0] = 1/spc[0];
+ invSpc[1] = 1/spc[1];
+ invSpc[2] = 1/spc[2];
+
+ int outputformat = GetTypeFormat( bbGetInputOutputFormat() , bbGetInputIn() );
+
+ mimage = vtkImageData::New();
+ mimage->SetSpacing(bbGetInputIn()->GetSpacing());
+ mimage->SetDimensions(bbGetInputIn()->GetDimensions());
+ mimage->SetExtent(bbGetInputIn()->GetExtent());
+ mimage->SetOrigin(bbGetInputIn()->GetOrigin());
+ //EED 2017-01-01 Migration VTK7
+ #if VTK_MAJOR_VERSION <= 5
+ mimage->SetScalarType( outputformat );
+ mimage->AllocateScalars();
+ #else
+ mimage->AllocateScalars( outputformat , 1);
+ #endif
+
+ int sizeLstPointR = bbGetInputlstPointR().size();
+ int iAxe,sizeAxe = bbGetInputlstPointX().size();
+ int ii;
+ int sizeImage = sizeX*sizeY*sizeZ;
+ // unsigned short *p;
+
+ // Clean image
+ memset( (char*)mimage->GetScalarPointer(0,0,0) , 0, sizeImage*(mimage->GetScalarSize()) );
+
+ // p = (unsigned short*)mimage->GetScalarPointer (0, 0, 0);
+ // for ( ii=0 ; ii<sizeImage ; ii++)
+ // {
+ // *p = 0;
+ // p++;
+ // }
+
+
+ DEF_POINTER_IMAGE_VTK_CREA(vI,ssI,pI,stI,mimage)
+
+
+ int k1omp=(double)(sizeAxe-1)*0.0;
+ int k2omp=(double)(sizeAxe-1)*0.2;
+ int k3omp=(double)(sizeAxe-1)*0.4;
+ int k4omp=(double)(sizeAxe-1)*0.6;
+ int k5omp=(double)(sizeAxe-1)*0.8;
+ int k6omp=(double)(sizeAxe-1)*1.0;
+
+ printf("EED AxeVolume::Process (with openmp)\n");
+
+ #pragma omp parallel for
+ for (iAxe=0 ; iAxe<sizeAxe; iAxe++)
+ {
+ if ( (k1omp==iAxe) || (k2omp==iAxe) || (k3omp==iAxe) ||
+ (k4omp==iAxe) || (k5omp==iAxe) || (k6omp==iAxe) ) { printf(" %d%\n", (int)(((double)iAxe/(double)(sizeAxe-1))*100 )); }
+ int i,j,k;
+ double rx,ry,rz;
+ double r,rr;
+ double px,py,pz;
+ double px1,py1,pz1;
+ double px2,py2,pz2;
+ double vItmpOMP;
+
+ if (iAxe<sizeLstPointR)
{
- for ( k=pz1 ; k<pz2 ; k++ )
+ r = bbGetInputlstPointR()[ iAxe ]* invSpc[0];
+ } else {
+ if (bbGetInputlstPointR().size()>=1)
{
- if ( (i>=0) && (i<sizeX) && (j>=0) && (j<sizeY) &&(k>=0) && (k<sizeZ) ){
- rx = i - px;
- ry = j - py;
- rz = k - pz;
- rr = rx*rx + ry*ry + rz*rz;
- if ( rx*rx + ry*ry + rz*rz <= r*r )
+ r = bbGetInputlstPointR()[ bbGetInputlstPointR().size()-1 ] * invSpc[0];
+ } else {
+ r = 1;
+ }
+ } // if iAxe sizeLstPointR
+ px = bbGetInputlstPointX()[iAxe] * invSpc[0];
+ py = bbGetInputlstPointY()[iAxe] * invSpc[1];
+ pz = bbGetInputlstPointZ()[iAxe] * invSpc[2];
+ px1 = px - r;
+ py1 = py - r;
+ pz1 = pz - r;
+ px2 = px + r;
+ py2 = py + r;
+ pz2 = pz + r;
+ rr=r*r;
+
+ long int index;
+ for ( i=px1 ; i<=px2 ; i++ )
+ {
+ rx = i - px;
+ rx = rx*rx;
+ for ( j=py1 ; j<py2 ; j++ )
+ {
+ ry = j - py;
+ ry = ry*ry;
+ for ( k=pz1 ; k<pz2 ; k++ )
+ {
+ if ( (i>=0) && (i<sizeX) && (j>=0) && (j<sizeY) &&(k>=0) && (k<sizeZ) )
{
- p = (unsigned short*)mimage->GetScalarPointer (i, j, k);
- *p=255;
- }
- } // inside point
- } //for k
- } //for j
- } //for i
- } // for iAxe
- bbSetOutputOut( mimage );
+ // p = (unsigned short*)mimage->GetScalarPointer (i, j, k);
+ // if (*p==0)
+ index=i+j*sizeX+k*sizeX*sizeY;
+ GETVALUE2_VTK_CREA(vItmpOMP,pI,stI,index)
+ // EED2020-04-25 if ( mimage->GetScalarComponentAsDouble(i,j,k,0)==0 )
+ if ( vI==0 )
+ {
+ rz = k - pz;
+ rz = rz*rz;
+ if ( rx + ry + rz <= rr )
+ {
+ // *p=255;
+ vItmpOMP=bbGetInputValue();
+ SETVALUE2_VTK_CREA(vItmpOMP,pI,stI,index)
+ // EED2020-04-25 mimage->SetScalarComponentFromDouble (i,j,k,0, bbGetInputValue() );
+ }
+ } // *p==0
+ } // if inside point
+ } //for k
+ } //for j
+ } //for i
+ } // for iAxe
+ bbSetOutputOut( mimage );
+ } else {
+ printf("\n");
+ printf("EED Warnning!! AxeVolume::Process The Input In is not set.\n");
+ printf("\n");
+ }// if bbGetInputIn()
}
+ //-----------------------------------------------------------------
+ void AxeVolume::bbUserSetDefaultValues()
+ {
+ mimage=NULL;
+ bbSetInputOutputFormat("SAME");
+ bbSetInputValue(255);
+ }
+ //-----------------------------------------------------------------
+ void AxeVolume::bbUserInitializeProcessing()
+ {
+ }
-void AxeVolume::bbUserConstructor()
-{
- mimage = NULL;
-}
-void AxeVolume::bbUserCopyConstructor(bbtk::BlackBox::Pointer)
-{
+ //-----------------------------------------------------------------
+ void AxeVolume::bbUserFinalizeProcessing()
+ {
+ }
-}
-void AxeVolume::bbUserDestructor()
-{
+ //-----------------------------------------------------------------
-}
}
// EO namespace bbcreaMaracasVisu
git://git.creatis.insa-lyon.fr / creaMaracasVisu.git / blobdiff