]> Creatis software - creaVtk.git/blobdiff - bbtk_creaVtk_PKG/src/bbcreaVtkCreateMeshFromPoints.cxx
#3502 Bug close surface in CreateMeshFromPoints
[creaVtk.git] / bbtk_creaVtk_PKG / src / bbcreaVtkCreateMeshFromPoints.cxx
index 3d6227fc45d9202a66d34c711c216e932bcd2969..c794d404e66043e165af0fd6449a069061ad4448 100644 (file)
@@ -5,6 +5,7 @@
 #include "bbcreaVtkPackage.h"
 
 #include "vtkTriangleStrip.h"
+#include <vtkMath.h>
 
 namespace bbcreaVtk
 {
@@ -31,13 +32,14 @@ void CreateMeshFromPoints::Process()
 
 //    bbSetOutputOut( bbGetInputIn() );
 //    std::cout << "Output value = " <<bbGetOutputOut() << std::endl;
+
                std::vector<double> lstX                = bbGetInputLstX();
                std::vector<double> lstY                = bbGetInputLstY();
                std::vector<double> lstZ                = bbGetInputLstZ();
                std::vector<int> lstIndexs              = bbGetInputLstIndexs();
-               if ( (lstIndexs.size()<=1) || (lstX.size()==0) || (lstX.size()!=lstY.size()) || (lstY.size()!=lstZ.size()) )
+               if ( (lstIndexs.size()<1) || (lstX.size()==0) || (lstX.size()!=lstY.size()) || (lstY.size()!=lstZ.size()) )
                {
-                       printf("Warnning! CreateMeshFromPoints::Process: List of points X Y Z  and LstIndexes is not correct\n");
+                       printf("Warning! CreateMeshFromPoints::Process: List of points X Y Z  and LstIndexes is not correct\n");
                        bbSetOutputOut(NULL);
                } else  {
                        int ii,sizeSegment1,sizeSegment2;
@@ -58,7 +60,7 @@ void CreateMeshFromPoints::Process()
                        int iSeg1,iSeg2;
                        int iGeneral    =       0;
                        int     sizeLstIdexes=lstIndexs.size();
-                       for (i=0; i<sizeLstIdexes-1;i++)
+                       for (i=0; i<sizeLstIdexes-1; i++ )
                        {
                                sizeSegment1 = lstIndexs[i];
                                sizeSegment2 = lstIndexs[i+1];
@@ -76,12 +78,42 @@ void CreateMeshFromPoints::Process()
                                        triangleStrip->GetPointIds()->SetId(ii*2+1,iSeg2);
                                        iSeg1++;
                                        iSeg2++;
-                                       if (iSeg1>=maxSegment1) iSeg1=maxSegment1-1;
-                                       if (iSeg2>=maxSegment2) iSeg2=maxSegment2-1;
+                       if (iSeg1>=maxSegment1) { iSeg1=maxSegment1-1; }
+                       if (iSeg2>=maxSegment2) { iSeg2=maxSegment2-1; }
                                } // for ii 
                                iGeneral=iGeneral+sizeSegment1;
                                cells->InsertNextCell(triangleStrip);
                        } //for  LstIndexs
+
+                       if(bbGetInputCloseSurface())
+                       {                       
+                               int lastId1 = lstIndexs[0]-1;
+                               int lastId2 = sizeLstX - 1;
+                               int firstId2 = sizeLstX - lstIndexs[sizeLstIdexes - 1];
+                               bool face1open = lstX[0] != lstX[lastId1] && lstY[0] != lstY[lastId1] && lstZ[0] != lstZ[lastId1];
+                               bool face2open = lstX[firstId2] != lstX[lastId2] && lstY[firstId2] != lstY[lastId2] && lstZ[firstId2] != lstZ[lastId2];
+                               
+                               bool altFace1open = lstX[0] != lstX[firstId2] && lstY[0] != lstY[firstId2] && lstZ[0] != lstZ[firstId2];
+                               bool altFace2open = lstX[lastId1] != lstX[lastId2] && lstY[lastId1] != lstY[lastId2] && lstZ[lastId1] != lstZ[lastId2];
+                               
+                               isClosedCont = false;
+                               //false = Open Contour
+                               //true = Closed Contour
+                               if(!face1open && !face2open)
+                               {
+                                       isClosedCont = true;
+                                       CloseContourSides(lstIndexs, true);
+                               }
+                               else if(!altFace1open && !altFace2open)
+                               {
+                                       isClosedCont = true;
+                                       CloseContourSides(lstIndexs, false);
+                               }
+                               else{
+                                       CloseOpenContourSurface(lstIndexs);
+                               }
+                       }
+                    
 //                     vtkPolyData *polydata = vtkPolyData::New();
                        if (polydata!=NULL) polydata->Delete();
                        polydata = vtkPolyData::New();
@@ -97,9 +129,219 @@ void CreateMeshFromPoints::Process()
                        triangle = vtkTriangleFilter::New();
                        triangle->SetInputData( clean->GetOutput() );
                        triangle->Update();
-                       bbSetOutputOut( clean->GetOutput() );
+            bbSetOutputOut( triangle->GetOutput() );
+            //            bbSetOutputOut( clean->GetOutput() );
                }// if listXYZ size
+               //printf("PG CreateMeshFromPoints::Process: End\n");
+}
+/**
+* Closes the sides of the contour
+* iterates in one way or the other, depending on the order of the points and calculated vectors.
+* uPointOrder: Points are order in a U shape
+* lstIndexs: number of points on each spline
+*/
+void CreateMeshFromPoints::CloseContourSides(std::vector<int> lstIndexs, bool uPointOrder){
+       int     sizeLstIdexes = lstIndexs.size();
+       int sizePoints = bbGetInputLstX().size();
+
+       int firstIndex, end, centroidId, numPointsFace, contraryId;
+       int increment = uPointOrder?1:sizeLstIdexes;
+       double centroid[3];
+       int numProcessFaces = sizeLstIdexes > 1?2:1;
+       for(int facesIdx = 0; facesIdx < numProcessFaces; facesIdx++){
+               std::fill(std::begin(centroid), std::end(centroid), 0);
+               if(facesIdx == 0)
+               {
+                       firstIndex = 0;
+                       numPointsFace = uPointOrder?lstIndexs[0]: sizeLstIdexes;
+                       end = uPointOrder?firstIndex + numPointsFace:sizePoints - lstIndexs[sizeLstIdexes - 1] + 1;
+                       contraryId = sizePoints-1;
+               }else{
+                       firstIndex = uPointOrder?sizePoints - lstIndexs[sizeLstIdexes-1]:lstIndexs[0]-1;
+                       numPointsFace = uPointOrder?lstIndexs[sizeLstIdexes-1]:sizeLstIdexes;
+                       end = uPointOrder?firstIndex + numPointsFace:sizePoints;
+                       contraryId = 0;
+               }
+               if(numPointsFace > 1)
+               {
+                       bool validCentroid = CalcValidCentroid(centroid, firstIndex, end, increment, numPointsFace);
+                       if(validCentroid)
+                       {
+                               bool normalOrder    = isPointingCorrectly(firstIndex, firstIndex+increment, centroid, contraryId);
+                               centroidId          = points->InsertNextPoint(centroid[0], centroid[1], centroid[2]);
+                               vtkSmartPointer<vtkTriangleStrip> triangleStrip1 = vtkSmartPointer<vtkTriangleStrip>::New();
+                               triangleStrip1->GetPointIds()->SetNumberOfIds(numPointsFace*2 + (!isClosedCont?2:0));
+                               if( normalOrder )
+                {
+                                       int initial = firstIndex;
+                                       int triangleIndex = 0;
+                                       for(int index = initial; index < end; index+=increment){
+                                               triangleStrip1->GetPointIds()->SetId(triangleIndex,index);
+                                               triangleStrip1->GetPointIds()->SetId(triangleIndex+1,centroidId);//1
+                                               if(index+increment >= end && !isClosedCont){
+                                                       triangleStrip1->GetPointIds()->SetId(triangleIndex+2,initial);//2
+                                                       triangleStrip1->GetPointIds()->SetId(triangleIndex+3,centroidId);//3
+                                               }
+                                               triangleIndex+=2;
+                                       }
+                                       cells->InsertNextCell(triangleStrip1);
+                               } else {
+                                       int initial = firstIndex-1;
+                                       int triangleIndex = 0;
+                                       int triangleStripStart = end-1;
+                                       for(int index = triangleStripStart; index > initial; index-=increment){
+                                               triangleStrip1->GetPointIds()->SetId(triangleIndex,index);
+                                               triangleStrip1->GetPointIds()->SetId(triangleIndex+1,centroidId);
+                                               if(index-increment <= initial && !isClosedCont){
+                                                       triangleStrip1->GetPointIds()->SetId(triangleIndex+2,triangleStripStart);
+                                                       triangleStrip1->GetPointIds()->SetId(triangleIndex+3,centroidId);
+                                               }
+                                               triangleIndex+=2;
+                                       }
+                                       cells->InsertNextCell(triangleStrip1);
+                               }
+                       }//if validCentroid
+               }//if numPointsFace
+       }//for facesIdx
+
+}
+
+/**
+* Checks if the normal from firstPointId, secPointId and centroid points away 
+* from the vector centroid to contrPointId.
+* Used to check that the order used to create the new polygons is correct.
+*/
+bool CreateMeshFromPoints::isPointingCorrectly( int firstPointId, int secPointId, double(&centroid)[3], int contrPointId) {
+
+       double firstPoint[3], secPoint[3], contrPoint[3];
+       points->GetPoint(firstPointId, firstPoint);
+       points->GetPoint(secPointId, secPoint);
+       
+       double firstVect[3], secVect[3], normal[3], contrVect[3];
+       
+       vtkMath::Subtract(firstPoint, centroid, firstVect);
+       vtkMath::Subtract(secPoint, centroid, secVect);
+       
+       points->GetPoint(contrPointId, contrPoint);
+       vtkMath::Subtract(contrPoint, centroid, contrVect);
+       
+       vtkMath::Cross(firstVect, secVect, normal);
+       double dotCalc;
+       dotCalc = vtkMath::Dot(normal, contrVect);
+       
+       return dotCalc<0;
 }
+
+/**
+* Checks if points on each side of the shapes represent a curve.
+*/
+bool CreateMeshFromPoints::CheckLinePointOrder(){
+       int sizePoints = bbGetInputLstX().size();
+       std::vector<int> lstIndexs = bbGetInputLstIndexs();
+       double point1[3], point2[3], point3[3];
+       double center[3];
+       double firstRadiusSum = 0;
+       double secondRadiusSum = 0;
+       for(int i = 0; i < lstIndexs[0] && lstIndexs[0] > 9; i+=5){
+               if(i+10 < lstIndexs[0]){
+                       points->GetPoint(i, point1);
+                       points->GetPoint(i+5, point2);
+                       points->GetPoint(i+10, point3);
+                       firstRadiusSum += vtkMath::Solve3PointCircle(point1, point2, point3, center);
+               }
+       }
+       
+       for(int i = 0; i < sizePoints && lstIndexs.size() > 9; i+=(lstIndexs.size()*5)){
+               if(i+(10*lstIndexs.size()) < sizePoints){
+                       points->GetPoint(i, point1);
+                       points->GetPoint(i+(5*lstIndexs.size()), point2);
+                       points->GetPoint(i+(10*lstIndexs.size()), point3);
+                       secondRadiusSum += vtkMath::Solve3PointCircle(point1, point2, point3, center);
+               }
+       }
+
+       return firstRadiusSum > secondRadiusSum;
+}
+
+/**
+* Closes an open contour
+* lstIndexs: number of points on each spline
+*/
+void CreateMeshFromPoints::CloseOpenContourSurface(std::vector<int> lstIndexs){
+       bool linePointOrder = CheckLinePointOrder();
+       CloseContourSides(lstIndexs, !linePointOrder);
+       CloseContourBottom(!linePointOrder);
+}
+
+/**
+* Calculates centroid and checks if points are collinear.
+* centroid: array to store calculation
+* start: start index of points to use
+* end: end index of points to use
+* increment: increment to be used in point iteration
+* numPoints: number of points used to calculate the centroid.
+* Returns a bool indicating the validity of the centroid calculated.
+* False = invalid centroid = all points are the same.
+*/
+bool CreateMeshFromPoints::CalcValidCentroid(double(&centroid)[3], int start, int end, int increment, int numPoints){
+       double currPoint[3] = {}, prevPoint[3] = {}, middlePoint[3] = {}, firstPoint[3] = {};
+       double vector1[3], vector2[3];
+       bool samePoint = true;
+       int splineMidPoint = numPoints/2;
+       bool collinear = true;
+
+       points->GetPoint(start, firstPoint);
+       points->GetPoint(splineMidPoint, middlePoint);
+       vtkMath::Subtract(middlePoint, firstPoint, vector1);
+
+       for(int i = start; i < end; i+=increment){
+               points->GetPoint(i, currPoint);
+               if(samePoint && i > start && (currPoint[0] != prevPoint[0] || currPoint[1] != prevPoint[1] || currPoint[2] != prevPoint[2])){
+                       samePoint = false;
+               }
+
+               vtkMath::Subtract(currPoint, firstPoint, vector2);
+               double angle = vtkMath::AngleBetweenVectors(vector1, vector2);
+               if(angle > 0.0001 && collinear){
+                       collinear = false;
+               }
+               
+               centroid[0] += currPoint[0];
+               centroid[1] += currPoint[1];
+               centroid[2] += currPoint[2];
+               std::copy(std::begin(currPoint), std::end(currPoint), prevPoint);
+       }
+       
+       centroid[0] /= numPoints;
+       centroid[1] /= numPoints;
+       centroid[2] /= numPoints;
+       
+       return !samePoint && !collinear;
+}
+
+/**
+* Closes the bottom of the given countour.
+* Should only be used when its an open contour.
+* uPointOrder: points are ordered in U shape
+*/
+void CreateMeshFromPoints::CloseContourBottom(bool uPointOrder){
+       std::vector<int> lstIndexs = bbGetInputLstIndexs();
+       int sizeLstIdexes = lstIndexs.size();
+       int sizeLstX = bbGetInputLstX().size();
+       
+       vtkSmartPointer<vtkTriangleStrip> triangleStripBottom = vtkSmartPointer<vtkTriangleStrip>::New();
+       triangleStripBottom->GetPointIds()->SetNumberOfIds(sizeLstIdexes*2);
+       int triangleIndex = 0, currentId = 0, nextId = 0;
+       for(int splineIndex = 0; splineIndex < sizeLstIdexes;splineIndex++){
+               triangleStripBottom->GetPointIds()->SetId(triangleIndex, currentId);
+               nextId = uPointOrder?currentId + lstIndexs[splineIndex] - 1:sizeLstX - sizeLstIdexes + splineIndex;
+               triangleStripBottom->GetPointIds()->SetId(triangleIndex+1, nextId);
+               triangleIndex+=2;
+               currentId = uPointOrder?nextId + 1: splineIndex+1;
+       }
+       cells->InsertNextCell(triangleStripBottom);
+}
+
 //===== 
 // Before editing this file, make sure it's a file of your own (i.e.: it wasn't generated from xml description; if so : your modifications will be lost)
 //===== 
@@ -109,6 +351,8 @@ void CreateMeshFromPoints::bbUserSetDefaultValues()
 //  SET HERE THE DEFAULT INPUT/OUTPUT VALUES OF YOUR BOX 
 //    Here we initialize the input 'In' to 0
 //   bbSetInputIn(0);
+       bbSetInputCloseSurface(false);
+       isClosedCont = NULL;
        points          = NULL;
        cells           = NULL;
        polydata        = NULL;