sizeZ = 1;
vtkImageData *newImage = vtkImageData::New();
newImage->Initialize();
- newImage->SetScalarTypeToUnsignedChar();
newImage->SetSpacing( 1,1,1 );
newImage->SetDimensions( sizeX,sizeY,sizeZ );
- newImage->SetWholeExtent(0, sizeX-1,0,sizeY-1,0,sizeZ-1 );
newImage->SetExtent(0, sizeX-1,0,sizeY-1,0,sizeZ-1 );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ newImage->SetWholeExtent(0, sizeX-1,0,sizeY-1,0,sizeZ-1 );
+ newImage->SetScalarTypeToUnsignedChar();
newImage->SetNumberOfScalarComponents(1);
newImage->AllocateScalars();
newImage->Update();
+#else
+ newImage->AllocateScalars(VTK_UNSIGNED_CHAR,1);
+#endif
+
memset ( (void*)newImage->GetScalarPointer(), 0, sizeX*sizeY*1 );
for (i=0; i<sizeX; i++)
{
std::string inputfilename;
int slice;
int width;
+ long long dataSize;
+
if (bbGetInputDirectionPlane()=="XY")
{
if ((bbGetInputDirectionPlane()=="YZ") || (bbGetInputDirectionPlane()=="ZX"))
{
-
//-- Split FileName
std::size_t found = bbGetInputFileName().find_last_of("/\\");
std::string path = bbGetInputFileName().substr(0,found+1);
#else
path=path+"YZ_ZX/";
#endif
-
-
if (bbGetInputDirectionPlane()=="YZ")
{
inputfilename = path+filename+"_YZ.mhd";
slice = bbGetInputSlice();
if (slice<0 ) { slice=0; }
-
vtkImageData *newImage;
- long long int newHeaderSize;
+ long long newHeaderSize;
std::string newFileName=inputfilename+"-OneSlice";
int sx,sy,sz;
{
strcpy(mystring,"\n");
fgets(mystring,250,ffIn);
- if (strncmp("NDims",mystring,5)==0) {
+ if (strncmp("NDims",mystring,5)==0)
+ {
if (width==1)
{
strcpy(mystring,"NDims = 2\n");
newHeaderSize = (long long int)sx*(long long int)sy*(long long int)slice;
if (bbGetInputSlice()>=sz) {ok=false;}
} // if
- if (strncmp("ElementType = MET_CHAR",mystring,22)==0) { newHeaderSize=newHeaderSize*1; }
- if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) { newHeaderSize=newHeaderSize*1; }
- if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { newHeaderSize=newHeaderSize*2; }
- if (strncmp("ElementType = MET_SHORT",mystring,23)==0) { newHeaderSize=newHeaderSize*2; }
- if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) { newHeaderSize=newHeaderSize*4; }
- if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) { newHeaderSize=newHeaderSize*4; }
+ if (strncmp("ElementType = MET_CHAR",mystring,22)==0) { dataSize=sizeof(char); }
+ if (strncmp("ElementType = VTK_CHAR",mystring,22)==0) { dataSize=sizeof(char); }
+ if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) { dataSize=sizeof(unsigned char); }
+ if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0) { dataSize=sizeof(unsigned char); }
+ if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { dataSize=sizeof(unsigned short); }
+ if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { dataSize=sizeof(unsigned short); }
+ if (strncmp("ElementType = MET_SHORT",mystring,23)==0) { dataSize=sizeof(short); }
+ if (strncmp("ElementType = VTK_SHORT",mystring,23)==0) { dataSize=sizeof(short); }
+ if (strncmp("ElementType = MET_UINT",mystring,22)==0) { dataSize=sizeof(unsigned int); }
+ if (strncmp("ElementType = VTK_UNSIGNED_INT",mystring,30)==0) { dataSize=sizeof(unsigned int); }
+ if (strncmp("ElementType = MET_INT",mystring,21)==0) { dataSize=sizeof(int); }
+ if (strncmp("ElementType = VTK_INT",mystring,21)==0) { dataSize=sizeof(int); }
+ if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) { dataSize=sizeof(float); }
+ if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) { dataSize=sizeof(float); }
+ if (strncmp("ElementType = MET_LONG",mystring,22)==0) { dataSize=sizeof(long); }
+ if (strncmp("ElementType = VTK_LONG",mystring,22)==0) { dataSize=sizeof(long); }
+ if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0) { dataSize=sizeof(double); }
+ if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0) { dataSize=sizeof(double); }
+ newHeaderSize=newHeaderSize*dataSize;
+
if (strncmp("Offset",mystring,6)==0) {strcpy(mystring,"Offset = 0 0 0\n");}
if (strncmp("HeaderSize",mystring,10)==0) {strcpy(mystring,"");}
if (strncmp("ElementDataFile",mystring,15)==0)
long int headersize=0;
vtkImageData *newImage=NULL;
+ int imageType;
char mystring[250];
char strTmp[30];
if (strncmp("NDims",mystring,5)==0) { sscanf(mystring,"%s %s %d" ,strTmp, strTmp, &dim); }
if (strncmp("DimSize",mystring,6)==0) { sscanf(mystring,"%s %s %d %d %d" ,strTmp, strTmp, &dimX, &dimY,&dimZ); }
if (strncmp("ElementType",mystring,11)==0) { sscanf(mystring,"%s %s %s" ,strTmp, strTmp, strTmp2); formattype=strTmp2; }
- if (strncmp("ElementSpacing",mystring,11)==0) { sscanf(mystring,"%s %s %f %f %f" ,strTmp, strTmp, &spcX,&spcY,&spcZ); }
+ if (strncmp("ElementSpacing",mystring,14)==0) { sscanf(mystring,"%s %s %f %f %f" ,strTmp, strTmp, &spcX,&spcY,&spcZ); }
+ if (strncmp("ElementSize",mystring,11)==0) { sscanf(mystring,"%s %s %f %f %f" ,strTmp, strTmp, &spcX,&spcY,&spcZ); }
if (strncmp("Offset",mystring,6)==0) { sscanf(mystring,"%s %s %f %f %f" ,strTmp, strTmp, &ox, &oy, &oz); }
if (strncmp("HeaderSize",mystring,10)==0) { sscanf(mystring,"%s %s %ld" ,strTmp, strTmp, &headersize); }
if (strncmp("ElementDataFile",mystring,15)==0) { sscanf(mystring,"%s %s %s" ,strTmp, strTmp, strTmp2); elementdatafile=strTmp2; }
- if (strncmp("ElementType = MET_CHAR",mystring,22)==0) { newImage->SetScalarTypeToChar(); dataSize=sizeof(char); }
- if (strncmp("ElementType = VTK_CHAR",mystring,22)==0) { newImage->SetScalarTypeToChar(); dataSize=sizeof(char); }
- if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) { newImage->SetScalarTypeToUnsignedChar(); dataSize=sizeof(unsigned char); }
- if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0) { newImage->SetScalarTypeToUnsignedChar(); dataSize=sizeof(unsigned char); }
- if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { newImage->SetScalarTypeToUnsignedShort(); dataSize=sizeof(unsigned short);}
- if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { newImage->SetScalarTypeToUnsignedShort(); dataSize=sizeof(unsigned short);}
- if (strncmp("ElementType = MET_SHORT",mystring,23)==0) { newImage->SetScalarTypeToShort(); dataSize=sizeof(short); }
- if (strncmp("ElementType = VTK_SHORT",mystring,23)==0) { newImage->SetScalarTypeToShort(); dataSize=sizeof(short); }
- if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) { newImage->SetScalarTypeToFloat(); dataSize=sizeof(float); }
- if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) { newImage->SetScalarTypeToFloat(); dataSize=sizeof(float); }
- if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0) { newImage->SetScalarTypeToDouble(); dataSize=sizeof(double); }
- if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0) { newImage->SetScalarTypeToDouble(); dataSize=sizeof(double); }
+
+
+ if (strncmp("ElementType = MET_CHAR",mystring,22)==0) { imageType =VTK_CHAR; dataSize=sizeof(char); }
+ if (strncmp("ElementType = VTK_CHAR",mystring,22)==0) { imageType =VTK_CHAR; dataSize=sizeof(char); }
+ if (strncmp("ElementType = MET_UCHAR",mystring,23)==0) { imageType =VTK_UNSIGNED_CHAR; dataSize=sizeof(unsigned char); }
+ if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0) { imageType =VTK_UNSIGNED_CHAR; dataSize=sizeof(unsigned char); }
+ if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { imageType =VTK_UNSIGNED_SHORT; dataSize=sizeof(unsigned short);}
+ if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { imageType =VTK_UNSIGNED_SHORT; dataSize=sizeof(unsigned short);}
+ if (strncmp("ElementType = MET_SHORT",mystring,23)==0) { imageType =VTK_SHORT; dataSize=sizeof(short); }
+ if (strncmp("ElementType = VTK_SHORT",mystring,23)==0) { imageType =VTK_SHORT; dataSize=sizeof(short); }
+ if (strncmp("ElementType = MET_UINT",mystring,22)==0) { imageType =VTK_UNSIGNED_INT; dataSize=sizeof(unsigned int); }
+ if (strncmp("ElementType = VTK_UNSIGNED_INT",mystring,30)==0) { imageType =VTK_UNSIGNED_INT; dataSize=sizeof(unsigned int); }
+ if (strncmp("ElementType = MET_INT",mystring,21)==0) { imageType =VTK_INT; dataSize=sizeof(int); }
+ if (strncmp("ElementType = VTK_INT",mystring,21)==0) { imageType =VTK_INT; dataSize=sizeof(int); }
+ if (strncmp("ElementType = MET_FLOAT",mystring,23)==0) { imageType =VTK_FLOAT; dataSize=sizeof(float); }
+ if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0) { imageType =VTK_FLOAT; dataSize=sizeof(float); }
+ if (strncmp("ElementType = MET_LONG",mystring,22)==0) { imageType =VTK_LONG; dataSize=sizeof(long); }
+ if (strncmp("ElementType = VTK_LONG",mystring,22)==0) { imageType =VTK_LONG; dataSize=sizeof(long); }
+ if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0) { imageType =VTK_DOUBLE; dataSize=sizeof(double); }
+ if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0) { imageType =VTK_DOUBLE; dataSize=sizeof(double); }
} // while
fclose(ffIn);
#endif // defined(_WIN32)
-
if (fd < 0)
{
- printf("EED ReadMHDPlane::Read64lseek \n");
+ printf("EED ReadMHDPlane::Read64lseek WARNNING! raw file not exist\n");
fprintf(stderr, "%s\n", strerror(errno));
- exit(1);
- }
+ newImage=CreateDefaultImage();
+// exit(1);
+ }
+
- if (bbGetInputDirectionPlane()=="XY")
+ if ((bbGetInputDirectionPlane()=="XY") && (fd>=0))
{
newImage->SetSpacing( spcX,spcY,spcZ );
newImage->SetDimensions( dimX,dimY,width );
- newImage->SetWholeExtent(0, dimX-1,0,dimY-1,0,width-1 );
newImage->SetExtent(0, dimX-1,0,dimY-1,0,width-1 );
+
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ newImage->SetWholeExtent(0, dimX-1,0,dimY-1,0,width-1 );
newImage->SetNumberOfScalarComponents(1);
+ newImage->SetScalarType(imageType);
newImage->AllocateScalars();
newImage->Update();
+#else
+ newImage->AllocateScalars( imageType,1 );
+#endif
+
+
pos = dimX*dimY*(long long)slice*dataSize;
#if defined(_WIN32)
if (_lseeki64( fd, pos, SEEK_SET ) < 0)
}
} // if PLANE XY
- if (bbGetInputDirectionPlane()=="XZ")
+ if ((bbGetInputDirectionPlane()=="XZ") && (fd>=0))
{
newImage->SetSpacing( spcX,spcZ,spcY );
newImage->SetDimensions( dimX,dimZ,width );
- newImage->SetWholeExtent(0, dimX-1,0,dimZ-1,0,width-1 );
newImage->SetExtent(0, dimX-1,0,dimZ-1,0,width-1 );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ newImage->SetWholeExtent(0, dimX-1,0,dimZ-1,0,width-1 );
newImage->SetNumberOfScalarComponents(1);
+ newImage->SetScalarType(imageType);
newImage->AllocateScalars();
newImage->Update();
+#else
+ newImage->AllocateScalars( imageType, 1);
+#endif
+
int iWidth;
for (iWidth=0;iWidth<width;iWidth++)
{
}
} // if PLANE XZ
-
- if (bbGetInputDirectionPlane()=="YZ")
+ if ((bbGetInputDirectionPlane()=="YZ") && (fd>=0))
{
newImage->SetSpacing( spcY,spcZ,spcX );
newImage->SetDimensions( dimY,dimZ,width );
- newImage->SetWholeExtent(0, dimY-1,0,dimZ-1,0,width-1 );
newImage->SetExtent(0, dimY-1,0,dimZ-1,0,width-1 );
+//EED 2017-01-01 Migration VTK7
+#if VTK_MAJOR_VERSION <= 5
+ newImage->SetWholeExtent(0, dimY-1,0,dimZ-1,0,width-1 );
newImage->SetNumberOfScalarComponents(1);
+ newImage->SetScalarType(imageType);
newImage->AllocateScalars();
newImage->Update();
+#else
+ newImage->AllocateScalars( imageType ,1 );
+#endif
+
int iWidth;
for (iWidth=0;iWidth<width;iWidth++)
{
exit(1);
}
- pImage=(char*)(newImage->GetScalarPointer(i, j,iWidth ));
+ pImage=(char*)(newImage->GetScalarPointer(i, dimZ-1-j,iWidth ));
if ((ret = read(fd, pImage , dataSize)) < 0)
{
fprintf(stderr, "Failed reading: %s\n", strerror(errno));
pos = dimX*(long long int)slice*dataSize;
long long sizeBytesPlane = dimX*dimY*dataSize;
char *pImage = (char*)( newImage->GetScalarPointer(0,0,iWidth) );
- for (j=0;j<dimZ;j++)
+ for (j=dimZ-1;j>=0;j--)
{
#if defined(_WIN32)
if (_lseeki64( fd, pos + j*sizeBytesPlane , SEEK_SET ) < 0)
git://git.creatis.insa-lyon.fr / creaVtk.git / blobdiff