#3061 creaVtk Bug New Immediate - ReadMHDPlane box not reading MET_INT types files

[creaVtk.git] / bbtk_creaVtk_PKG / src / bbcreaVtkReadMHDPlane.cxx

diff --git a/bbtk_creaVtk_PKG/src/bbcreaVtkReadMHDPlane.cxx b/bbtk_creaVtk_PKG/src/bbcreaVtkReadMHDPlane.cxx
index 0c1833c49c57f72c1aae0040d75ad9199da2e834..223fe7e590c57219a95c349e9aca5c81ef77469e 100644 (file)
--- a/bbtk_creaVtk_PKG/src/bbcreaVtkReadMHDPlane.cxx
+++ b/bbtk_creaVtk_PKG/src/bbcreaVtkReadMHDPlane.cxx
@@ -80,6 +80,8 @@ void ReadMHDPlane::ReadNormalMHD()
        std::string inputfilename;
        int slice;
        int width;
+       long long dataSize;
+
 
        if (bbGetInputDirectionPlane()=="XY")
        {
@@ -89,7 +91,6 @@ void ReadMHDPlane::ReadNormalMHD()
 
        if ((bbGetInputDirectionPlane()=="YZ") || (bbGetInputDirectionPlane()=="ZX"))
        {
-
                //-- Split FileName
                std::size_t found               =       bbGetInputFileName().find_last_of("/\\");
                std::string path                =       bbGetInputFileName().substr(0,found+1);
@@ -99,8 +100,6 @@ void ReadMHDPlane::ReadNormalMHD()
 #else
                path=path+"YZ_ZX/";
 #endif
-       
-       
                if (bbGetInputDirectionPlane()=="YZ") 
                { 
                        inputfilename = path+filename+"_YZ.mhd";  
@@ -118,9 +117,8 @@ void ReadMHDPlane::ReadNormalMHD()
        slice = bbGetInputSlice();
        if (slice<0 ) { slice=0; }
 
-
        vtkImageData *newImage;
-       long long int newHeaderSize;
+       long long newHeaderSize;
     std::string newFileName=inputfilename+"-OneSlice";
 
     int sx,sy,sz;
@@ -136,7 +134,8 @@ void ReadMHDPlane::ReadNormalMHD()
        {
            strcpy(mystring,"\n");
                        fgets(mystring,250,ffIn);
-               if (strncmp("NDims",mystring,5)==0) {
+               if (strncmp("NDims",mystring,5)==0) 
+                       {
                                if (width==1) 
                                { 
                                        strcpy(mystring,"NDims = 2\n"); 
@@ -158,12 +157,26 @@ void ReadMHDPlane::ReadNormalMHD()
                        newHeaderSize = (long long int)sx*(long long int)sy*(long long int)slice;
                                if (bbGetInputSlice()>=sz) {ok=false;}
                        } // if
-               if (strncmp("ElementType = MET_CHAR",mystring,22)==0)   { newHeaderSize=newHeaderSize*1; }
-               if (strncmp("ElementType = MET_UCHAR",mystring,23)==0)  { newHeaderSize=newHeaderSize*1; }
-               if (strncmp("ElementType = MET_USHORT",mystring,24)==0) { newHeaderSize=newHeaderSize*2; }
-               if (strncmp("ElementType = MET_SHORT",mystring,23)==0)  { newHeaderSize=newHeaderSize*2; }
-               if (strncmp("ElementType = MET_FLOAT",mystring,23)==0)  { newHeaderSize=newHeaderSize*4; }
-               if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0)  { newHeaderSize=newHeaderSize*4; }
+               if (strncmp("ElementType = MET_CHAR",mystring,22)==0)                   { dataSize=sizeof(char);                        }
+               if (strncmp("ElementType = VTK_CHAR",mystring,22)==0)                   { dataSize=sizeof(char);                        }
+               if (strncmp("ElementType = MET_UCHAR",mystring,23)==0)                  { dataSize=sizeof(unsigned char);       }
+               if (strncmp("ElementType = VTK_UNSIGNED_CHAR",mystring,31)==0)  { dataSize=sizeof(unsigned char);       }
+               if (strncmp("ElementType = MET_USHORT",mystring,24)==0)                 { dataSize=sizeof(unsigned short);      }
+               if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { dataSize=sizeof(unsigned short);      }
+               if (strncmp("ElementType = MET_SHORT",mystring,23)==0)                  { dataSize=sizeof(short);                       }
+               if (strncmp("ElementType = VTK_SHORT",mystring,23)==0)                  { dataSize=sizeof(short);                       }
+               if (strncmp("ElementType = MET_UINT",mystring,22)==0)                   { dataSize=sizeof(unsigned int);        }
+               if (strncmp("ElementType = VTK_UNSIGNED_INT",mystring,30)==0)   { dataSize=sizeof(unsigned int);        }
+               if (strncmp("ElementType = MET_INT",mystring,21)==0)                    { dataSize=sizeof(int);                         }
+               if (strncmp("ElementType = VTK_INT",mystring,21)==0)                    { dataSize=sizeof(int);                         }
+               if (strncmp("ElementType = MET_FLOAT",mystring,23)==0)                  { dataSize=sizeof(float);                       }
+               if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0)                  { dataSize=sizeof(float);                       }
+               if (strncmp("ElementType = MET_LONG",mystring,22)==0)                   { dataSize=sizeof(long);                        }
+               if (strncmp("ElementType = VTK_LONG",mystring,22)==0)                   { dataSize=sizeof(long);                        }
+               if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0)                 { dataSize=sizeof(double);                      }
+               if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0)                 { dataSize=sizeof(double);                      }
+                       newHeaderSize=newHeaderSize*dataSize;
+
                if (strncmp("Offset",mystring,6)==0) {strcpy(mystring,"Offset = 0 0 0\n");}
                if (strncmp("HeaderSize",mystring,10)==0) {strcpy(mystring,"");}
                if (strncmp("ElementDataFile",mystring,15)==0) 
@@ -237,7 +250,8 @@ void ReadMHDPlane::Read64lseek()
                if (strncmp("NDims",mystring,5)==0)                     { sscanf(mystring,"%s %s %d"            ,strTmp, strTmp, &dim);                                 }
                if (strncmp("DimSize",mystring,6)==0)                   { sscanf(mystring,"%s %s %d %d %d"      ,strTmp, strTmp, &dimX, &dimY,&dimZ);   } 
                        if (strncmp("ElementType",mystring,11)==0)              { sscanf(mystring,"%s %s %s"            ,strTmp, strTmp, strTmp2); formattype=strTmp2;                  }
-                       if (strncmp("ElementSpacing",mystring,11)==0)   { sscanf(mystring,"%s %s %f %f %f"      ,strTmp, strTmp, &spcX,&spcY,&spcZ);    }
+                       if (strncmp("ElementSpacing",mystring,14)==0)   { sscanf(mystring,"%s %s %f %f %f"      ,strTmp, strTmp, &spcX,&spcY,&spcZ);    }
+                       if (strncmp("ElementSize",mystring,11)==0)              { sscanf(mystring,"%s %s %f %f %f"      ,strTmp, strTmp, &spcX,&spcY,&spcZ);    }
                if (strncmp("Offset",mystring,6)==0)                    { sscanf(mystring,"%s %s %f %f %f"      ,strTmp, strTmp, &ox, &oy, &oz);                }
                if (strncmp("HeaderSize",mystring,10)==0)               { sscanf(mystring,"%s %s %ld"           ,strTmp, strTmp, &headersize);                  }
                        if (strncmp("ElementDataFile",mystring,15)==0)  { sscanf(mystring,"%s %s %s"            ,strTmp, strTmp, strTmp2); elementdatafile=strTmp2;             }
@@ -250,8 +264,14 @@ void ReadMHDPlane::Read64lseek()
                if (strncmp("ElementType = VTK_UNSIGNED_SHORT",mystring,32)==0) { newImage->SetScalarTypeToUnsignedShort();     dataSize=sizeof(unsigned short);}
                if (strncmp("ElementType = MET_SHORT",mystring,23)==0)                  { newImage->SetScalarTypeToShort();                     dataSize=sizeof(short);                 }
                if (strncmp("ElementType = VTK_SHORT",mystring,23)==0)                  { newImage->SetScalarTypeToShort();                     dataSize=sizeof(short);                 }
+               if (strncmp("ElementType = MET_UINT",mystring,22)==0)                   { newImage->SetScalarTypeToUnsignedInt();       dataSize=sizeof(unsigned int);  }
+               if (strncmp("ElementType = VTK_UNSIGNED_INT",mystring,30)==0)   { newImage->SetScalarTypeToUnsignedInt();       dataSize=sizeof(unsigned int);  }
+               if (strncmp("ElementType = MET_INT",mystring,21)==0)                    { newImage->SetScalarTypeToInt();                       dataSize=sizeof(int);                   }
+               if (strncmp("ElementType = VTK_INT",mystring,21)==0)                    { newImage->SetScalarTypeToInt();                       dataSize=sizeof(int);                   }
                if (strncmp("ElementType = MET_FLOAT",mystring,23)==0)                  { newImage->SetScalarTypeToFloat();                     dataSize=sizeof(float);                 }
                if (strncmp("ElementType = VTK_FLOAT",mystring,23)==0)                  { newImage->SetScalarTypeToFloat();                     dataSize=sizeof(float);                 }
+               if (strncmp("ElementType = MET_LONG",mystring,22)==0)                   { newImage->SetScalarTypeToLong();                      dataSize=sizeof(long);                  }
+               if (strncmp("ElementType = VTK_LONG",mystring,22)==0)                   { newImage->SetScalarTypeToLong();                      dataSize=sizeof(long);                  }
                if (strncmp("ElementType = MET_DOUBLE",mystring,24)==0)                 { newImage->SetScalarTypeToDouble();            dataSize=sizeof(double);                }
                if (strncmp("ElementType = VTK_DOUBLE",mystring,24)==0)                 { newImage->SetScalarTypeToDouble();            dataSize=sizeof(double);                }
 
@@ -279,15 +299,16 @@ void ReadMHDPlane::Read64lseek()
 #endif // defined(_WIN32)
 
 
-
                if (fd < 0)
                {
-                       printf("EED ReadMHDPlane::Read64lseek \n");
+                       printf("EED ReadMHDPlane::Read64lseek   WARNNING! raw file not exist\n");
                        fprintf(stderr, "%s\n", strerror(errno));
-                       exit(1);
-               }
+                       newImage=CreateDefaultImage();
+//                     exit(1);
+               }       
+               
 
-               if (bbGetInputDirectionPlane()=="XY") 
+               if ((bbGetInputDirectionPlane()=="XY") && (fd>=0)) 
                { 
                        newImage->SetSpacing( spcX,spcY,spcZ );
                        newImage->SetDimensions(  dimX,dimY,width );
@@ -315,7 +336,7 @@ void ReadMHDPlane::Read64lseek()
                        }
                }  // if PLANE XY
 
-               if (bbGetInputDirectionPlane()=="XZ") 
+               if ((bbGetInputDirectionPlane()=="XZ") && (fd>=0))
                { 
                        newImage->SetSpacing( spcX,spcZ,spcY );
                        newImage->SetDimensions(  dimX,dimZ,width );
@@ -331,8 +352,7 @@ void ReadMHDPlane::Read64lseek()
                        }
                }  // if PLANE XZ
 
-
-               if (bbGetInputDirectionPlane()=="YZ") 
+               if ((bbGetInputDirectionPlane()=="YZ") && (fd>=0))
                { 
                        newImage->SetSpacing( spcY,spcZ,spcX );
                        newImage->SetDimensions(  dimY,dimZ,width );