# Check READ
-#-----------
+# ==========
#
-# We just write XDCM Files and AFFIM them
-# to be sure the writting was OK
+# This script :
+# - gdcmreads the images of gdcmData
+# - gdcmwrites the result, with Explicit Value Representation
+# into a '.XDCM' file
+# - tests the result
+# - using creatis' LibIDO/affimdcm (you may drop it)
+# - using mathieu malaterre's vtkgdcmViewer
+# - using Eric Nolf's xmedcon
+# - the full checking should be using e-film,
+# but it doesn't work on Windoz
+#
#
# Sebastien Barre's files have no interest here, since the header is
# a *very clean* ACR-NEMA
-# Our pb come from DICOM V3, with SQ, shadow groups, etc.
+# Our problems come from DICOM V3, with SQ, shadow groups, etc.
# --> EVERYWHERE, with XMEDCOM :
# --> warning: Incorrect OB value representation (fixed)
#No Swap Info
#------------
-testWrite mr176621.dcm x;
-PrintHeader mr176621.dcm.XDCM 2; .
-v mr176621.dcm.XDCM; # OK
-xmedcon mr176621.dcm.XDCM; #breaks because 'DICM" without group 0000
- # Write DCM needs 'CheckFileHeaderConsistency' method
+/home/jpr/JUNK/gdcmbin/bin/Write mr176621.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument mr176621.dcm.XDCM 2; .
+vtkgdcmViewer mr176621.dcm.XDCM; # OK
+xmedcon mr176621.dcm.XDCM; # warning: No transfer syntax found
+ # warning: Tag with uneven length
+ #
+ #breaks because 'DICM" without group 0000
+ # Write DCM needs 'CheckFileHeaderConsistency' method
# No Transfert Syntax
#--------------------
# ------------------------------------------- BIG SOUCY !!
affimdcm filein=cr172241.dcm zoom=-4;
xmedcon cr172241.dcm; # OK
-
-testWrite cr172241.dcm r;
+/home/jpr/JUNK/gdcmbin/bin/Write cr172241.dcm r;
affim filein=cr172241.dcm.RAW nbit=16 DIMX=1792 DIMY=2392;
-PrintHeader cr172241.dcm 2; #OK
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument cr172241.dcm 2; #OK
# But ... :
-v cr172241.dcm; # breaks (white image) WHITE IMAGE ?!?
+vtkgdcmViewer cr172241.dcm; # breaks (white image) WHITE IMAGE ?!?
# Doesn't break DaVaW ...
-testWrite cr172241.dcm x;
-PrintHeader cr172241.dcm.XDCM 2; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write cr172241.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument cr172241.dcm.XDCM 2; #OK
xmedcon cr172241.dcm.XDCM; # OK Incorrect OB value representation (fixed)
affimdcm filein=cr172241.dcm.XDCM; # OK
-v cr172241.dcm.XDCM; # breaks ?!? White image !
+vtkgdcmViewer cr172241.dcm.XDCM; # breaks ?!? White image !
+
+
+vtkgdcmViewer Wrist.pap; # PAPYRUS 3.0 single frame image
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument Wrist.pap 2;
+/home/jpr/JUNK/gdcmbin/bin/Write Wrist.pap x; # OK
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument Wrist.pap.XDCM
-testWrite cr_45031.dcm x;
-v cr_45031.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write cr_45031.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument cr_45031.dcm.XDCM 2;
+vtkgdcmViewer cr_45031.dcm.XDCM; #OK
xmedcon cr_45031.dcm.XDCM; #OK
-testWrite CR-MONO1-10-chest.dcm x;
-PrintHeader CR-MONO1-10-chest.dcm.XDCM 2; #OK
-v CR-MONO1-10-chest.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write CR-MONO1-10-chest.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument CR-MONO1-10-chest.dcm.XDCM 2; #OK
+vtkgdcmViewer CR-MONO1-10-chest.dcm.XDCM; #OK
xmedcon CR-MONO1-10-chest.dcm.XDCM; #OK Incorrect OB value representation (fixed)
-testWrite CT-MONO2-12-lomb-an2.acr2 x;
-PrintHeader CT-MONO2-12-lomb-an2.acr2.XDCM 2; # OK
-v CT-MONO2-12-lomb-an2.acr2.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-12-lomb-an2.acr2 x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument CT-MONO2-12-lomb-an2.acr2.XDCM 2; # OK
+vtkgdcmViewer CT-MONO2-12-lomb-an2.acr2.XDCM; #OK
xmedcon CT-MONO2-12-lomb-an2.acr2.XDCM; #OK Incorrect OB value representation (fixed)
xmedcon gdcm-MR-SIEMENS-16.acr1; # Original OK
-PrintHeader gdcm-MR-SIEMENS-16.acr1; #OK
-testWrite gdcm-MR-SIEMENS-16.acr1 x;
-PrintHeader gdcm-MR-SIEMENS-16.acr1.XDCM 2;
-v gdcm-MR-SIEMENS-16.acr1.XDCM;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument gdcm-MR-SIEMENS-16-1.acr; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-SIEMENS-16-1.acr x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument gdcm-MR-SIEMENS-16-1.acr.XDCM 2;
+vtkgdcmViewer gdcm-MR-SIEMENS-16-1.acr.XDCM;
xmedcon gdcm-MR-SIEMENS-16.acr1.XDCM; #breaks error: No images found
xmedcon gdcm-MR-SIEMENS-16.acr2 #original OK
-testWrite gdcm-MR-SIEMENS-16.acr2 x;
-PrintHeader gdcm-MR-SIEMENS-16.acr2.XDCM 2;
-v gdcm-MR-SIEMENS-16.acr2.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-SIEMENS-16-2.acr x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument gdcm-MR-SIEMENS-16-2.acr.XDCM 2;
+vtkgdcmViewer gdcm-MR-SIEMENS-16-2.acr.XDCM; #OK
xmedcon gdcm-MR-SIEMENS-16.acr2.XDCM; #breaks
- # --> TODO fix group length for odd groups
-#Feb 03 18:50:24 log[4419]: warning: No transfer syntax found
+ # --> TODO fix group length for odd groups#Feb 03 18:50:24 log[4419]: warning: No transfer syntax found
#Feb 03 18:50:24 log[4419]: warning: Tag with uneven length
#Feb 03 18:50:24 log[4419]: error: No images found
-testWrite MR-MONO2-12-an2.acr2 x;
-PrintHeader newACR1000.nema.XDCM 2;
-v MR-MONO2-12-an2.acr2.XDCM;
+/home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-12-an2.acr2 x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument newACR1000.nema.XDCM 2;
+vtkgdcmViewer MR-MONO2-12-an2.acr2.XDCM;
xmedcon MR-MONO2-12-an2.acr2.XDCM; # OK warning: Incorrect OB value representation
-testWrite newACR1000.nema x; # == gdcmMR-SIEMENS-16.acr2
-PrintHeader newACR1000.nema.XDCM; #OK
-v newACR1000.nema.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write newACR1000.nema x; # == gdcmMR-SIEMENS-16.acr2
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument newACR1000.nema.XDCM; #OK
+vtkgdcmViewer newACR1000.nema.XDCM; #OK
xmedcon newACR1000.nema.XDCM; # breaks : no image found
-testWrite oldACR00001.ima x; # == gdcm-MR-SIEMENS.16.acr1
-PrintHeader oldACR00001.ima.XDCM; # OK
-v oldACR00001.ima.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write oldACR00001.ima x; # == gdcm-MR-SIEMENS.16.acr1
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument oldACR00001.ima.XDCM; # OK
+vtkgdcmViewer oldACR00001.ima.XDCM; #OK
xmedcon oldACR00001.ima.XDCM; # breaks : no image found
-testWrite OT-MONO2-8-a7.dcm x;
-v OT-MONO2-8-a7.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write OT-MONO2-8-a7.dcm x;
+vtkgdcmViewer OT-MONO2-8-a7.dcm.XDCM; #OK
xmedcon OT-MONO2-8-a7.dcm.XDCM ; #OK
#No Samples Per Pixel
#--------------------
-testWrite gdcm-CR-DCMTK-16-NonSamplePerPix.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-CR-DCMTK-16-NonSamplePerPix.dcm x;
affim filein=gdcm-CR-DCMTK-16-NonSamplePerPix.dcm;
-PrintHeader gdcm-CR-DCMTK-16-NonSamplePerPix.dcm.XDCM 2; # OK
-v gdcm-CR-DCMTK-16-NonSamplePerPix.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument gdcm-CR-DCMTK-16-NonSamplePerPix.dcm.XDCM 2; # OK
+vtkgdcmViewer gdcm-CR-DCMTK-16-NonSamplePerPix.dcm.XDCM; #OK
xmedcon gdcm-CR-DCMTK-16-NonSamplePerPix.dcm.XDCM #OK
#Unnormalized Rectangular LibIDO format image
#--------------------------------------------
-testWrite gdcm-ACR-LibIDO.acr x;
-v gdcm-ACR-LibIDO.acr.XDCM; # OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-ACR-LibIDO.acr x;
+vtkgdcmViewer gdcm-ACR-LibIDO.acr.XDCM; # OK
xmedcon gdcm-ACR-LibIDO.acr.XDCM; #inverts x and y (of course)
#Bits Allocated =12, Bits Stored=12
#----------------------------------
#MR Philips (once upon a time in Lyon-Sud)
-testWrite MR-MONO2-12-angio-an1.acr1 x;
-v MR-MONO2-12-angio-an1.acr1.XDCM; # shitty image
+/home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-12-angio-an1.acr1 x;
+vtkgdcmViewer MR-MONO2-12-angio-an1.acr1.XDCM; # shitty image
xmedcon MR-MONO2-12-angio-an1.acr1.XDCM; # pas mieux : warning: Incorrect PixelData length
#RGB
#---
-testWrite US.3405.1.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write US.3405.1.dcm x;
echo "expected pixelType=8U SamplesPerPixel=1 PlanarConfiguration=0";
echo " PhotometricInterpretation=RGB";
-v US.3405.1.dcm.XDCM; #OK
+vtkgdcmViewer US.3405.1.dcm.XDCM; #OK
xmedcon US.3405.1.dcm.XDCM; #OK
# ------------------------------------------- KING SIZE SOUCY !!
-testWrite OT-PAL-8-face.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write OT-PAL-8-face.dcm x;
echo "expected pixelType=8U SamplesPerPixel=3 PlanarConfiguration=1";
echo " PhotometricInterpretation=PALETTE COLOR";
-PrintHeaderOT-PAL-8-face.dcm.XDCM; OK
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocumentOT-PAL-8-face.dcm.XDCM; OK
affimdcm filein=OT-PAL-8-face.dcm.XDCM; #OK
-v OT-PAL-8-face.dcm.XDCM; # seg fault .!?
+vtkgdcmViewer OT-PAL-8-face.dcm.XDCM; # seg fault .!?
xmedcon OT-PAL-8-face.dcm.XDCM; #OK
-testWrite 8BitsUncompressedColor.dcm x;
-v 8BitsUncompressedColor.dcm.XDCM; # seg fault .!?
+/home/jpr/JUNK/gdcmbin/bin/Write 8BitsUncompressedColor.dcm x;
+vtkgdcmViewer 8BitsUncompressedColor.dcm.XDCM; # seg fault .!?
xmedcon 8BitsUncompressedColor.dcm.XDCM ; #OK
# Implicit VR - Little Endian
#-----------------------------
-testWrite CT-MONO2-16-ankle.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-16-ankle.dcm x;
xmedcon CT-MONO2-16-ankle.dcm.XDCM; #ok
- v CT-MONO2-16-ankle.dcm.XDCM; #ok
- PrintHeader CT-MONO2-16-ankle.dcm 2; #ok
+ vtkgdcmViewer CT-MONO2-16-ankle.dcm.XDCM; #ok
+ /home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument CT-MONO2-16-ankle.dcm 2; #ok
-testWrite CT-MONO2-16-ort.dcm x;
-v CT-MONO2-16-ort.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-16-ort.dcm x;
+vtkgdcmViewer CT-MONO2-16-ort.dcm.XDCM; #OK
xmedcon CT-MONO2-16-ort.dcm.XDCM; #OK
-testWrite CT-MONO2-8-abdo.dcm x;
-v CT-MONO2-8-abdo.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-8-abdo.dcm x;
+vtkgdcmViewer CT-MONO2-8-abdo.dcm.XDCM; #OK
xmedcon CT-MONO2-8-abdo.dcm.XDCM; #OK
-testWrite gdcm-MR-PHILIPS-16.dcm x;
-PrintHeader gdcm-MR-PHILIPS-16.dcm.XDCM 2; #OK
-v gdcm-MR-PHILIPS-16.dcm.XDCM; # OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-PHILIPS-16.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument gdcm-MR-PHILIPS-16.dcm.XDCM 2; #OK
+vtkgdcmViewer gdcm-MR-PHILIPS-16.dcm.XDCM; # OK
xmedcon gdcm-MR-PHILIPS-16.dcm.XDCM; # error: No images found
xmedcon gdcm-MR-PHILIPS-16.dcm; # OK with original image
-testWrite MR-MONO2-16-head.dcm x;
-v MR-MONO2-16-head.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-16-head.dcm x;
+vtkgdcmViewer MR-MONO2-16-head.dcm.XDCM; #OK
xmedcon MR-MONO2-16-head.dcm.XDCM; #OK
-testWrite multiframe1Integris.dcm x;
-PrintHeader CT-MONO2-8-abdo.dcm.XDCM 2; #OK
-v multiframe1Integris.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write multiframe1Integris.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument CT-MONO2-8-abdo.dcm.XDCM 2; #OK
+vtkgdcmViewer multiframe1Integris.dcm.XDCM; #OK
xmedcon multiframe1Integris.dcm.XDCM; #breaks No images found
xmedcon multiframe1Integris.dcm;
-testWrite multiframe2GE.dcm x;
-v multiframe2GE.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write multiframe2GE.dcm x;
+vtkgdcmViewer multiframe2GE.dcm.XDCM; #OK
#breaks xmedcon
xmedcon multiframe2GE.dcm.XDCM; #breaks No images found
-v irmPhlipsNew1.dcm;
-testWrite irmPhlipsNew1.dcm x; # == gdcm-MR-PHILIPS-16.dcm
-v irmPhlipsNew1.dcm.XDCM; #OK
+vtkgdcmViewer irmPhlipsNew1.dcm;
+/home/jpr/JUNK/gdcmbin/bin/Write irmPhlipsNew1.dcm x; # == gdcm-MR-PHILIPS-16.dcm
+vtkgdcmViewer irmPhlipsNew1.dcm.XDCM; #OK
xmedcon irmPhlipsNew1.dcm.XDCM; #breaks : No images found
#avec imagette (icone)
-v icone.dcm; #OK
-PrintHeader icone.dcm 2 | grep fffe;
+vtkgdcmViewer icone.dcm; #OK
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument icone.dcm 2 | grep fffe;
echo "so many 0xfffe ! (274)"
-testWrite icone.dcm x;
-PrintHeader icone.dcm.XDCM 2;
-#PrintHeader OK; v OK; breaks xmedcom
-v icone.dcm.XDCM; # shitty image --> TODO : FIX (once again)icon pb
+/home/jpr/JUNK/gdcmbin/bin/Write icone.dcm x;
+xmedcon icone.dcm; #original image OK
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument icone.dcm.XDCM 2;
+#/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument OK; vtkgdcmViewer OK; breaks xmedcom
+vtkgdcmViewer icone.dcm.XDCM; # shitty image --> TODO : FIX (once again)icon pb
xmedcon icone.dcm.XDCM; #breaks
#Palette
#Explicit VR - Little Endian
#----------------------------
-testWrite CT-MONO2-16-brain.dcm x;
-v CT-MONO2-16-brain.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-16-brain.dcm x;
+vtkgdcmViewer CT-MONO2-16-brain.dcm.XDCM; #OK
xmedcon CT-MONO2-16-brain.dcm.XDCM; #OK
-PrintHeader gdcm-MR-PHILIPS-16-Multi-Seq.dcm 2;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument gdcm-MR-PHILIPS-16-Multi-Seq.dcm 2;
xmedcon gdcm-MR-PHILIPS-16-Multi-Seq.dcm #OK :Skip PHILIPS premature item bug
-v gdcm-MR-PHILIPS-16-Multi-Seq.dcm; #OK
-testWrite gdcm-MR-PHILIPS-16-Multi-Seq.dcm x;
-PrintHeader gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM 2; #pixel group missing??!?
-#v gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM; #shitty image, ofcourse
+vtkgdcmViewer gdcm-MR-PHILIPS-16-Multi-Seq.dcm; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-PHILIPS-16-Multi-Seq.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM 2; #pixel group missing??!?
+#vtkgdcmViewer gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM; #shitty image, ofcourse
xmedcon gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM; # works ?!?
-v gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM;
+vtkgdcmViewer gdcm-MR-PHILIPS-16-Multi-Seq.dcm.XDCM;
-testWrite gdcm-MR-PHILIPS-16-NonRectPix.dcm x;
-v gdcm-MR-PHILIPS-16-NonRectPix.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-MR-PHILIPS-16-NonRectPix.dcm x;
+vtkgdcmViewer gdcm-MR-PHILIPS-16-NonRectPix.dcm.XDCM; #OK
xmedcon gdcm-MR-PHILIPS-16-NonRectPix.dcm.XDCM; #OK warning: Incorrect sequence length
-testWrite MR-MONO2-8-16x-heart.dcm x; #multiframe # equals to ???
-v MR-MONO2-8-16x-heart.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-8-16x-heart.dcm x; #multiframe # equals to ???
+vtkgdcmViewer MR-MONO2-8-16x-heart.dcm.XDCM; #OK
xmedcon MR-MONO2-8-16x-heart.dcm.XDCM; #OK
-testWrite NM-MONO2-16-13x-heart.dcm x; #multiframe
-v NM-MONO2-16-13x-heart.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write NM-MONO2-16-13x-heart.dcm x; #multiframe
+vtkgdcmViewer NM-MONO2-16-13x-heart.dcm.XDCM; #OK
xmedcon NM-MONO2-16-13x-heart.dcm.XDCM; #OK
-testWrite sonataMonaco.dcm x;
-v sonataMonaco.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write sonataMonaco.dcm x;
+vtkgdcmViewer sonataMonaco.dcm.XDCM; #OK
xmedcon sonataMonaco.dcm.XDCM; #OK
#MultiFrame
-testWrite US-MONO2-8-8x-execho.dcm x;
-PrintHeader US-MONO2-8-8x-execho.dcm.XDCM;
-v US-MONO2-8-8x-execho.dcm.XDCM; # OK
+/home/jpr/JUNK/gdcmbin/bin/Write US-MONO2-8-8x-execho.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument US-MONO2-8-8x-execho.dcm.XDCM;
+vtkgdcmViewer US-MONO2-8-8x-execho.dcm.XDCM; # OK
xmedcon US-MONO2-8-8x-execho.dcm.XDCM; #OK
#RGB
-testWrite US-RGB-8-epicard.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write US-RGB-8-epicard.dcm x;
echo "expected pixelType=8U SamplesPerPixel=3 PlanarConfiguration=1";
echo " PhotometricInterpretation=RGB";
-v US-RGB-8-epicard.dcm.XDCM; #OK
+vtkgdcmViewer US-RGB-8-epicard.dcm.XDCM; #OK
xmedcon US-RGB-8-epicard.dcm.XDCM; #OK
-testWrite US-RGB-8-esopecho.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write US-RGB-8-esopecho.dcm x;
echo "expected pixelType=8U SamplesPerPixel=3 PlanarConfiguration=0";
echo " PhotometricInterpretation=RGB",
xmedcon US-RGB-8-esopecho.dcm.XDCM; #OK
#--------------------------------------------------------------------------
# (JPEG Lossless)
-testWrite CT-MONO2-16-chest.dcm x;
-v CT-MONO2-16-chest.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write CT-MONO2-16-chest.dcm x;
+vtkgdcmViewer CT-MONO2-16-chest.dcm.XDCM; #OK
xmedcon CT-MONO2-16-chest.dcm.XDCM; #OK
-testWrite 012345.002.050.dcm x;
-v 012345.002.050.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write 012345.002.050.dcm x;
+vtkgdcmViewer 012345.002.050.dcm.XDCM; #OK
xmedcon 012345.002.050.dcm.XDCM; #OK
-testWrite gdcm-JPEG-LossLess3a.dcm x;
-v gdcm-JPEG-LossLess3a.dcm.XDCM ; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-JPEG-LossLess3a.dcm x;
+vtkgdcmViewer gdcm-JPEG-LossLess3a.dcm.XDCM ; #OK
xmedcon gdcm-JPEG-LossLess3a.dcm.XDCM; #OK
-testWrite XA-MONO2-8-12x-catheter.dcm x;
-v XA-MONO2-8-12x-catheter.dcm.XDCM; #OK
-PrintHeader XA-MONO2-8-12x-catheter.dcm.XDCM 2;
+/home/jpr/JUNK/gdcmbin/bin/Write XA-MONO2-8-12x-catheter.dcm x;
+vtkgdcmViewer XA-MONO2-8-12x-catheter.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument XA-MONO2-8-12x-catheter.dcm.XDCM 2;
xmedcon XA-MONO2-8-12x-catheter.dcm.XDCM; #OK
-testWrite xa_integris.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write xa_integris.dcm x;
echo "a lot of fragments expected here";
-v xa_integris.dcm.XDCM #OK
+vtkgdcmViewer xa_integris.dcm.XDCM #OK
xmedcon xa_integris.dcm.XDCM #OK
-testWrite 16BitsJpegLosslessGrayScale.dcm x;
-v 16BitsJpegLosslessGrayScale.dcm.XDCM #OK
+/home/jpr/JUNK/gdcmbin/bin/Write 16BitsJpegLosslessGrayScale.dcm x;
+vtkgdcmViewer 16BitsJpegLosslessGrayScale.dcm.XDCM #OK
xmedcon 16BitsJpegLosslessGrayScale.dcm.XDCM #OK
#comming from GE dlx via VTServer
-v I9000001.dcm;
-testWrite I9000001.dcm x;
-PrintHeader I9000001.dcm.XDCM 2; # pixel group NOT FOUND ??!??
+vtkgdcmViewer I9000001.dcm;
+/home/jpr/JUNK/gdcmbin/bin/Write I9000001.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument I9000001.dcm.XDCM 2; # pixel group NOT FOUND ??!??
#black image
-v I9000001.dcm.XDCM;
+vtkgdcmViewer I9000001.dcm.XDCM;
#no image found
xmedcon I9000001.dcm.XDCM;
#JPEG Extended (Process 2 & 4) // 16 bits
#-----------------------------
-testWrite gdcm-JPEG-Extended.dcm x;
-v gdcm-JPEG-Extended.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-JPEG-Extended.dcm x;
+vtkgdcmViewer gdcm-JPEG-Extended.dcm.XDCM; #OK
xmedcon gdcm-JPEG-Extended.dcm.XDCM; #OK
-testWrite jpeglossy1.dcm x;
-v jpeglossy1.dcm.XDCM #OK
+/home/jpr/JUNK/gdcmbin/bin/Write jpeglossy1.dcm x;
+vtkgdcmViewer jpeglossy1.dcm.XDCM #OK
xmedcon jpeglossy1.dcm.XDCM #OK
#JPEG Baseline (Process 14)
#--------------------------
-testWrite MR-MONO2-12-shoulder.dcm x;
-v MR-MONO2-12-shoulder.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write MR-MONO2-12-shoulder.dcm x;
+vtkgdcmViewer MR-MONO2-12-shoulder.dcm.XDCM; #OK
xmedcon MR-MONO2-12-shoulder.dcm.XDCM; #OK
#fichier format ecat.
-#testWrite imageEcat.ecat r
+#/home/jpr/JUNK/gdcmbin/bin/Write imageEcat.ecat r
#JPEG Lossy 8 bits
#=================
#JPEG Baseline (Process 1)
#-------------------------
# Bracco Files
-testWrite US.1.2.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write US.1.2.dcm x;
echo "expected : A lot of Fragments (40), nb Frames = 40 ;-)";
echo "expected pixelType=8U SamplesPerPixel=3 PlanarConfiguration=0";
echo " PhotometricInterpretation=YBR_FULL_422";
-v US.1.2.dcm.XDCM; #OK
+vtkgdcmViewer US.1.2.dcm.XDCM; #OK
xmedcon US.1.2.dcm.XDCM; #OK
#Sequoia Acusson U11
-testWrite CLIP0001-Sequoia-U11.dcm x;
-v CLIP0001-Sequoia-U11.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write CLIP0001-Sequoia-U11.dcm x;
+vtkgdcmViewer CLIP0001-Sequoia-U11.dcm.XDCM; #OK
xmedcon CLIP0001-Sequoia-U11.dcm.XDCM; #OK
#RLE Lossless
#-------------
-testWrite canadaAloka.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write canadaAloka.dcm x;
echo "expected pixelType=8U SamplesPerPixel=1";
echo " PlanarConfiguration=0 PhotometricInterpretation=MONOCHROME2";
echo " nb Frames (DIMZ) : 1";
-v canadaAloka.dcm.XDCM; # OK
+vtkgdcmViewer canadaAloka.dcm.XDCM; # OK
xmedcon canadaAloka.dcm.XDCM; #OK
-testWrite jpeglossy1.dcm x; # equal to ???
-v jpeglossy1.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write jpeglossy1.dcm x; # equal to ???
+vtkgdcmViewer jpeglossy1.dcm.XDCM; #OK
xmedcon jpeglossy1.dcm.XDCM; #OK
-testWrite FMAG0001.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write FMAG0001.dcm x;
echo "expected pixelType=8U SamplesPerPixel=3";
echo " PlanarConfiguration=1 PhotometricInterpretation=YBR_FULL";
echo " nb Frames (DIMZ) : 1";
-v FMAG0001.dcm.XDCM; #OK
+vtkgdcmViewer FMAG0001.dcm.XDCM; #OK
xmedcon FMAG0001.dcm.XDCM; #OK
-v QMAG0001.dcm; #OK
+vtkgdcmViewer QMAG0001.dcm; #OK
xmedcon QMAG0001.dcm; #original breaks xmedcon
#warning: Unknown PhotometricInterpretation
-testWrite QMAG0001.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write QMAG0001.dcm x;
echo "expected pixelType=8U SamplesPerPixel=3";
echo " PlanarConfiguration=1 PhotometricInterpretation=YBR_FULL";
-v QMAG0001.dcm.XDCM; #OK
+vtkgdcmViewer QMAG0001.dcm.XDCM; #OK
xmedcon QMAG0001.dcm.XDCM; #OK
-testWrite US-PAL-8-10x-echo.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write US-PAL-8-10x-echo.dcm x;
echo "expected pixelType=8U SamplesPerPixel=1 PlanarConfiguration=0";
echo " PhotometricInterpretation=PALETTE COLOR";
echo " nb Frames (DIMZ): 10";
echo "expected : Parsing 10 'single fragment' Segments";
echo " Reading 10 'single fragment' Segments (ouf!)";
-v US-PAL-8-10x-echo.dcm.XDCM; # SEG FAULT
+vtkgdcmViewer US-PAL-8-10x-echo.dcm.XDCM; # SEG FAULT
xmedcon US-PAL-8-10x-echo.dcm.XDCM; #OK
-testWrite 8BitsRunLengthGrayScale.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write 8BitsRunLengthGrayScale.dcm x;
echo "expected : correct Gray image";
-v 8BitsRunLengthGrayScale.dcm.XDCM; #OK
+vtkgdcmViewer 8BitsRunLengthGrayScale.dcm.XDCM; #OK
xmedcon 8BitsRunLengthGrayScale.dcm.XDCM; #OK
-testWrite 8BitsRunLengthColor.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write 8BitsRunLengthColor.dcm x;
echo "expected pixelType=8U SamplesPerPixel=1 PlanarConfiguration=2";
echo " PhotometricInterpretation=PALETTE COLOR";
-v 8BitsRunLengthColor.dcm.XDCM; # SEG FAULT
+vtkgdcmViewer 8BitsRunLengthColor.dcm.XDCM; # SEG FAULT
echo "WAS expected correct color image";
xmedcon 8BitsRunLengthColor.dcm.XDCM; #OK
#RLE 16 bits --> Try to find some more images
-testWrite 16BitsRunLengthGrayScale.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write 16BitsRunLengthGrayScale.dcm x;
echo "expected pixelType=16U SamplesPerPixel=1 PlanarConfiguration=0";
echo " PhotometricInterpretation=MONOCHROME2";
-v 16BitsRunLengthGrayScale.dcm.XDCM;
+vtkgdcmViewer 16BitsRunLengthGrayScale.dcm.XDCM;
xmedcon 16BitsRunLengthGrayScale.dcm.XDCM; #OK
#Were supposed to be bugged
#--------------------------
#(break xmedcon)
xmedcon 00191113.dcm; #No images found
-testWrite 00191113.dcm x;
-v 00191113.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write 00191113.dcm x;
+vtkgdcmViewer 00191113.dcm.XDCM; #OK
xmedcon 00191113.dcm.XDCM; #OK
xmedcon DermaColorLossLess.dcm; #breaks xmedcon : No images found
-testWrite DermaColorLossLess.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write DermaColorLossLess.dcm x;
xmedcon DermaColorLossLess.dcm.XDCM; #breaks xmedcon
#Feb 02 19:33:16 log[2619]: warning: Tag with uneven length
#Feb 02 19:33:16 log[2619]: warning: No transfer syntax found
#Feb 02 19:33:16 log[2619]: error: No images found
-v DermaColorLossLess.dcm.XDCM #OK
+vtkgdcmViewer DermaColorLossLess.dcm.XDCM #OK
#Original breaks xmedcon, affimdcm complian ?!
affimdcm filein=RadBWLossLess.dcm; #OK
-v RadBWLossLess.dcm; #OK
+vtkgdcmViewer RadBWLossLess.dcm; #OK
xmedcon RadBWLossLess.dcm; # breaks :error: No images found
-testWrite RadBWLossLess.dcm x;
-v RadBWLossLess.dcm.XDCM; #OK
+/home/jpr/JUNK/gdcmbin/bin/Write RadBWLossLess.dcm x;
+vtkgdcmViewer RadBWLossLess.dcm.XDCM; #OK
xmedcon RadBWLossLess.dcm.XDCM; #error: No images found
#Known as BUGGED !
#----------------
#Rectangular old 24 Bits image
-v gdcm-RGB-LibIDORect.acr; # OK
-testWrite gdcm-RGB-LibIDORect.acr x;
-v gdcm-RGB-LibIDORect.acr.XDCM;
+vtkgdcmViewer gdcm-RGB-LibIDORect.acr; # OK
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-RGB-LibIDORect.acr x;
+vtkgdcmViewer gdcm-RGB-LibIDORect.acr.XDCM;
xmedcon gdcm-RGB-LibIDORect.acr.XDCM; # breaks : large Bit Allocated (24)
#TODO transform '24 bit images' into 8 bits + samples per pixel = 3
#MR GE GENESIS_SIGNA Palo Alto
-testWrite DicomSampleNastyGEImage.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write DicomSampleNastyGEImage.dcm x;
echo " expected : warning uneven length (13) for 0008|103e";
-v DicomSampleNastyGEImage.dcm.XDCM; #OK
+vtkgdcmViewer DicomSampleNastyGEImage.dcm.XDCM; #OK
xmedcon DicomSampleNastyGEImage.dcm.XDCM; #OK
#MR Philips NTSCAN Hop. Neuro Lyon
-PrintHeader philipsMR-lossy.ima #OK
+/home/jpr/JUNK/gdcmbin/bin/gdcmTests PrintDocument philipsMR-lossy.ima #OK
xmedcon philipsMR-lossy.ima; #original breaks xmedcon
-v philipsMR-lossy.ima; #Original OK
-testWrite philipsMR-lossy.ima x;
+vtkgdcmViewer philipsMR-lossy.ima; #Original OK
+/home/jpr/JUNK/gdcmbin/bin/Write philipsMR-lossy.ima x;
echo "WAS expected : 'Bogus Huffman table definition' on philipsMR-lossy.ima";
echo "IS expected : 'JERR_BAD_HUFF_TABLE sym 16 (>15)' but the show goes on";
-v philipsMR-lossy.ima.XDCM; # BLACK IMAGE
+vtkgdcmViewer philipsMR-lossy.ima.XDCM; # BLACK IMAGE
xmedcon philipsMR-lossy.ima.XDCM; #OK
#CT Siemens Hop. Salengro Lille
-testWrite gdcm-JPEG-LossLess3a.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-JPEG-LossLess3a.dcm x;
echo "expected : wrong sequence delimiter (b00c,0eb6) at end of pixels";
echo "xmedcon says 'error: Unexpected end of file'";
vtkgdcmViewer gdcm-JPEG-LossLess3a.dcm.XDCM; #OK; needs 'R' for display
#CR Philips Thoravision Hop Cardio Lyon
affimdcm filein=gdcm-JPEG-LossLessThoravision.dcm; # OK, wrong image as usual
xmedcon gdcm-JPEG-LossLessThoravision.dcm; #original seg faults xmedcon
-testWrite gdcm-JPEG-LossLessThoravision.dcm x; #breaks ;
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-JPEG-LossLessThoravision.dcm x; #breaks ;
echo "expected : 147 fragments,length : 29860 + 145*32760 + 14416";
echo "breaks xmedcom, breaks e-film";
echo "WAS expected : hashed image -with jLBJpeg-";
xmedcon gdcm-JPEG-LossLessThoravision.dcm.XDCM; # NOT CHECKED
#MR Picker ST. ANTHONY HOSPITAL
-testWrite MR.6799.1.dcm x; #equal to ???
+/home/jpr/JUNK/gdcmbin/bin/Write MR.6799.1.dcm x; #equal to ???
echo "OK; DICOM Image with NO Preamble";
-v MR.6799.1.dcm.XDCM; #OK
+vtkgdcmViewer MR.6799.1.dcm.XDCM; #OK
xmedcon MR.6799.1.dcm.XDCM; #OK
#Segmented Palette Color LUT Data
xmedcon gdcm-US-ALOKA-16.dcm; #breaks # Missing CLUT
vtkgdcmViewer gdcm-US-ALOKA-16.dcm3; #OK
-testWrite gdcm-US-ALOKA-16.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write gdcm-US-ALOKA-16.dcm x;
echo "expected pixelType=16U SamplesPerPixel=1 PlanarConfiguration=0";
echo " PhotometricInterpretation=PALETTE COLOR";
echo "expected : Gray image since 'Segmented xxx Palette Color LUT Data' not yet taken into account";
#Feb 03 13:40:19 log[26999]: error: No images found
# bugged Siemens 'Leonardo' image
-testWrite 8078283Leonardo.dcm x;
+/home/jpr/JUNK/gdcmbin/bin/Write 8078283Leonardo.dcm x;
xmedcon 8078283Leonardo.dcm.XDCM; #OK
#CT McTwin Elscint C.H.R.U LILLE C.HURIEZ
xmedcon MxTwinLossLess.dcm; #breaks No images found
- v MxTwinLossLess.dcm; #OK
- testWrite MxTwinLossLess.dcm x;
- v MxTwinLossLess.dcm.XDCM; #OK
+ vtkgdcmViewer MxTwinLossLess.dcm; #OK
+ /home/jpr/JUNK/gdcmbin/bin/Write MxTwinLossLess.dcm x;
+ vtkgdcmViewer MxTwinLossLess.dcm.XDCM; #OK
xmedcon MxTwinLossLess.dcm.XDCM #breaks
# MRI image from VPRO burned CD
-v mriThruVPRO.dcm; # Tasteless SHIT
+vtkgdcmViewer mriThruVPRO.dcm; # Tasteless SHIT
xmedcon mriThruVPRO.dcm; # pas mieux
-testWrite mriThruVPRO.dcm x;
-v mriThruVPRO.dcm.XDCM;
+/home/jpr/JUNK/gdcmbin/bin/Write mriThruVPRO.dcm x;
+vtkgdcmViewer mriThruVPRO.dcm.XDCM;
echo "expected : tasteless SHIT !"
echo "breaks Siemens Leonardo viewer . JPEG encoding is bugged?"
# due to H table, a SeQuence is tagged with 0 length
# when using gdcmFile::WriteDcmXXX
xmedcon fromTheralys.dcm; # Original breaks xmedcon
-testWrite fromTheralys.dcm x;
-v fromTheralys.dcm.XDCM; # OK
+/home/jpr/JUNK/gdcmbin/bin/Write fromTheralys.dcm x;
+vtkgdcmViewer fromTheralys.dcm.XDCM; # OK
xmedcon fromTheralys.dcm.XDCM; # OK
git://git.creatis.insa-lyon.fr / gdcmData.git / blobdiff