Merge branch 'master' of git.creatis.insa-lyon.fr:clitk

[clitk.git] / cluster_tools / gate_job_cluster.job

diff --git a/cluster_tools/gate_job_cluster.job b/cluster_tools/gate_job_cluster.job
index 506e125ec5db68bdebc31d72bd93de471b471b79..1ece1a611b0018daee535bf346a551ddc2121da4 100644 (file)
--- a/cluster_tools/gate_job_cluster.job
+++ b/cluster_tools/gate_job_cluster.job
@@ -12,9 +12,6 @@
 #PBS -l walltime=100:00:00
 #PBS -j oe
 
-#env
-#pwd
-#exit 1
 
 
 function error {
@@ -65,10 +62,14 @@ test -d "${MACRODIR}" && test -d "${MACRODIR}/mac" || error "invalid macro"
 
 echo "Copying inputs"
 LOCALMACRODIR=$(mktemp -d)
+trap "mv output ${OUTPUTDIR}/output.${PBS_JOBID%%.*} ; rm -r ${LOCALMACRODIR} ; exit 1" 1 2 3 15
 cd ${LOCALMACRODIR}
 cp -r -L "${MACRODIR}"/{data,mac} .
 mkdir output
 
+# Enforce one thread
+ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1
+
 echo "Lauching macro"
 date
 if test "$RELEASEDIR" = "NONE"