echo " ${indent}merged ${count} files"
}
-doseMerger="mergeDosePerEnegryFile.sh"
+doseMerger="mergeDosePerEnergyFile.sh"
test -x "./mergeDosePerEnergyFile.sh" && doseMerger="./mergeDosePerEnergyFile.sh"
function merge_dose {
echo " ${indent}merged ${count} files"
}
+doseMerger="mergeDoseByRegions.sh"
+test -x "./mergeDoseByRegions.sh" && doseMerger="./mergeDoseByRegions.sh"
+
+function merge_doseByRegions {
+ local merged="$1"
+ shift
+ echo " ${indent}entering dose merger"
+ echo " ${indent}merger is ${doseMerger}"
+ echo " ${indent}creating ${merged}"
+ local count=0
+ start_bar $#
+ while test $# -gt 0
+ do
+ local partial="$1"
+ shift
+ let count++
+
+ if test ! -f "${merged}"
+ then
+ update_bar ${count} "copying first partial result ${partial}"
+ cp "${partial}" "${merged}"
+ continue
+ fi
+
+ update_bar ${count} "adding ${partial}"
+ ${doseMerger} -i "${merged}" -j "${partial}" -o "${merged}" 2> /dev/null > /dev/null || warning "error while calling ${doseMerger}"
+ done
+ end_bar
+ echo " ${indent}merged ${count} files"
+}
+
txtImageMerger="clitkMergeAsciiDoseActor"
test -f "./clitkMergeAsciiDoseActor" && txtImageMerger="./clitkMergeAsciiDoseActor"
fi
fi
+ if test "${firstpartialoutputextension}" == "txt" && grep -qs 'vol(mm3)' "${firstpartialoutputfile}"
+ then
+ echo "${indent}this is a DoseByRegions file"
+ local mergedfile="${outputdir}/$(basename "${firstpartialoutputfile}")"
+ merge_doseByRegions "${mergedfile}" ${partialoutputfiles} || error "error while merging"
+ return
+ fi
+
+
if test "${firstpartialoutputextension}" == "txt"
then
echo "${indent}this is a non specific txt output"
merge_dispatcher_uncertainty "${outputfile}" "${force}"
done
+echo "compute job statistics"
+python computeEnlapsedTime.py ${rundir} gate
+mv "statJobs.txt" "${outputdir}/statJobs.txt"
+
+
if [ -f "${rundir}/params.txt" ]
then
echo "copying params file"