cp all files from the mac folder

[clitk.git] / cluster_tools / gate_run_submit_cluster.sh

diff --git a/cluster_tools/gate_run_submit_cluster.sh b/cluster_tools/gate_run_submit_cluster.sh
index 904a0d7162e2f12c664db4cec1e37efd16de5d4c..a99e89939b6a1aebfff93a10ea3673eb5cb0e5f5 100755 (executable)
--- a/cluster_tools/gate_run_submit_cluster.sh
+++ b/cluster_tools/gate_run_submit_cluster.sh
@@ -97,6 +97,7 @@ test -z "${PARAM}" || echo "param = ${PARAM}" >> "${PARAMFILE}"
 # Copy macros files (for log)
 mkdir ${OUTPUTDIR}/mac
 cp ${MACROFILE} ${OUTPUTDIR}/mac
+cp mac/* ${OUTPUTDIR}/mac/
 files=`grep "control/execute" ${MACROFILE} | cut -d " " -f 2`
 for i in $files
 do
@@ -113,14 +114,15 @@ while test $NJOBS -gt 0; do
     then
         PROJECTGROUP=creatis
         qsub -o "${OUTPUTDIR}" \
-            -l sps=1 \
+             -e "${OUTPUTDIR}" \
+             -l sps=1 \
              -N "gate.${RUNID}" \
              -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
              "${JOBFILE}" || error "submission error"
     else
         qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
-           -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
-           "${JOBFILE}" || error "submission error"
+      -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
+      "${JOBFILE}" || error "submission error"
     fi
 
     let NJOBS--