Add VTK 8.1.1 and ITK 5 beta

[clitk.git] / cluster_tools / gate_run_submit_cluster.sh

diff --git a/cluster_tools/gate_run_submit_cluster.sh b/cluster_tools/gate_run_submit_cluster.sh
index 904a0d7162e2f12c664db4cec1e37efd16de5d4c..ebb0917d8efff9fc1c044f8394f1f51bdecaf837 100755 (executable)
--- a/cluster_tools/gate_run_submit_cluster.sh
+++ b/cluster_tools/gate_run_submit_cluster.sh
@@ -50,7 +50,6 @@ test -f ${MACRODIR}/${MACROFILE} || error "invalid macro"
 if test "$(dnsdomainname)" = "in2p3.fr"
 then
     OUTPUTDIR=$(mktemp -d -p "${MACRODIR}" run.XXXX || error "can't create temp dir")
-    ssh -i ${HOME}/.ssh/ccin2p3 linux1.dg.creatis.insa-lyon.fr mkdir -p "cc/$(basename ${OUTPUTDIR})"
 else
     unamestr=`uname`
     if [[ "$unamestr" == 'Darwin' ]]; then
@@ -113,14 +112,15 @@ while test $NJOBS -gt 0; do
     then
         PROJECTGROUP=creatis
         qsub -o "${OUTPUTDIR}" \
-            -l sps=1 \
+             -e "${OUTPUTDIR}" \
+             -l sps=1 \
              -N "gate.${RUNID}" \
              -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
              "${JOBFILE}" || error "submission error"
     else
         qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
-           -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
-           "${JOBFILE}" || error "submission error"
+      -v "PARAM=${PARAM},INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
+      "${JOBFILE}" || error "submission error"
     fi
 
     let NJOBS--