Clean up of David's commits

[clitk.git] / cluster_tools / gate_run_submit_cluster_sps.sh

diff --git a/cluster_tools/gate_run_submit_cluster_sps.sh b/cluster_tools/gate_run_submit_cluster_sps.sh
deleted file mode 100755 (executable)
index ddc48ca..0000000
--- a/cluster_tools/gate_run_submit_cluster_sps.sh
+++ /dev/null
@@ -1,125 +0,0 @@
-#! /usr/local/bin/bash -lx
-
-set -u
-SCRIPTNAME="$(basename "${0}")"
-
-# -------------------------------------------------
-function error {
-    echo "ERROR: $1"
-    usage
-    exit 1
-}
-# -------------------------------------------------
-
-DEFAULTRELEASESUFFIX="NONE"
-DEFAULTNUMBEROFJOBS="10"
-
-# -------------------------------------------------
-function usage {
-    echo "${SCRIPTNAME} mac/main.mac njobs releasesuffix paramtogate"
-    echo "default njobs = ${DEFAULTNUMBEROFJOBS}"
-    echo "default releasesuffix = ${DEFAULTRELEASESUFFIX} (NONE means use Gate in PATH)"
-    echo "default paramtogate = \"\" (use \"\" around params and \\ in front of commas)"
-}
-# -------------------------------------------------
-
-test $# -eq 0 && usage && exit 0
-
-RELEASESUFFIX=${3:-"${DEFAULTRELEASESUFFIX}"}
-RELEASEDIR="${HOME}/releases/grid_release${RELEASESUFFIX}"
-if test "$(dnsdomainname)" = "in2p3.fr"
-then
-    JOBFILE="$(dirname $0)/gate_job_ccin2p3.job"
-else
-    JOBFILE="$(dirname $0)/gate_job_cluster.job"
-fi
-
-echo "Checking stuff"
-test -f ${JOBFILE} || error "can't find job file ${JOBFILE}"
-if test "${RELEASESUFFIX}" = "${DEFAULTRELEASESUFFIX}"
-then
-    RELEASEDIR="NONE"
-    which Gate 2>&1 >/dev/null || error "there is no Gate in the PATH"
-else
-    test -d ${RELEASEDIR} || error "invalid release dir ${RELEASEDIR}"
-fi
-MACRODIR=$(pwd)
-test -d ${MACRODIR}/mac && test -d ${MACRODIR}/data || error "invalid path"
-MACROFILE=${1:?"provide relative macro path"}
-test -f ${MACRODIR}/${MACROFILE} || error "invalid macro"
-if test "$(dnsdomainname)" = "in2p3.fr"
-then
-    OUTPUTDIR=$(mktemp -d -p "${MACRODIR}" run.XXXX || error "can't create temp dir")
-    ssh -i ${HOME}/.ssh/ccin2p3 linux1.dg.creatis.insa-lyon.fr mkdir -p "cc/$(basename ${OUTPUTDIR})"
-else
-    OUTPUTDIR=$(mktemp --tmpdir=${MACRODIR} -d run.XXXX || error "can't create temp dir")
-fi
-test -d ${OUTPUTDIR} || error "can't locate output dir"
-RUNID=${OUTPUTDIR##*.}
-NJOBS=${2:-"${DEFAULTNUMBEROFJOBS}"}
-NJOBSMAX=${NJOBS}
-PARAM="${4:-""}"
-
-echo "Lets roll!!"
-echo "runid is ${RUNID}"
-
-QSUB=$(which qsub 2> /dev/null)
-# echo "qsub is $(which qsub)"
-test -z "${QSUB}" && QSUB="noqsub"
-if test "${QSUB}" = "noqsub"
-then
-    echo "qsub is not found. Simply run Gate on multiple cores."
-fi
-
-test -z "${PARAM}" && echo "no param" || echo "param is ${PARAM}"
-if test "$RELEASESUFFIX" = "$DEFAULTRELEASESUFFIX"
-then
-    echo "Gate is $(which Gate)"
-else
-    echo "Gate release is $(basename ${RELEASEDIR})"
-fi
-echo "submitting ${NJOBS} jobs"
-
-PARAMFILE="${OUTPUTDIR}/params.txt"
-echo "njobs = ${NJOBS}" >> "${PARAMFILE}"
-echo "macro = ${MACROFILE}" >> "${PARAMFILE}"
-test -z "${PARAM}" || echo "param = ${PARAM}" >> "${PARAMFILE}"
-
-# Copy macros files (for log)
-mkdir ${OUTPUTDIR}/mac
-cp ${MACROFILE} ${OUTPUTDIR}/mac
-files=`grep "control/execute" ${MACROFILE} | cut -d " " -f 2`
-for i in $files
-do
-    cp $i ${OUTPUTDIR}/mac
-done
-
-while test $NJOBS -gt 0; do
-
-    if test "${QSUB}" = "noqsub"
-    then
-        echo "Launching Gate log in ${OUTPUTDIR}/gate_${NJOBS}.log"
-        PARAM=\"${PARAM}\" INDEX=${NJOBS} INDEXMAX=${NJOBSMAX} OUTPUTDIR=${OUTPUTDIR}  RELEASEDIR=${RELEASEDIR} MACROFILE=${MACROFILE} MACRODIR=${MACRODIR} PBS_JOBID="local_${NJOBS}" bash "${JOBFILE}" > ${OUTPUTDIR}/gate_${NJOBS}.log &
-    elif test "$(dnsdomainname)" = "in2p3.fr"
-    then
-        PROJECTGROUP=creatis 
-        qsub -o "${OUTPUTDIR}" \
-            -l sps=1 \
-             -N "gate.${RUNID}" \
-             -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
-             "${JOBFILE}" || error "submission error"
-    else
-        qsub -N "gatejob.${RUNID}" -o "${OUTPUTDIR}" \
-             -l sps=1 \
-           -v "PARAM=\"${PARAM}\",INDEX=${NJOBS},INDEXMAX=${NJOBSMAX},OUTPUTDIR=${OUTPUTDIR},RELEASEDIR=${RELEASEDIR},MACROFILE=${MACROFILE},MACRODIR=${MACRODIR}" \
-           "${JOBFILE}" || error "submission error"
-    fi
-
-    let NJOBS--
-done
-
-echo "runid is ${RUNID}"
-if test "$(dnsdomainname)" = "in2p3.fr"
-then
-    rsync -av --remove-source-files -e "ssh -i ${HOME}/.ssh/ccin2p3" ${OUTPUTDIR}/ "linux1.dg.creatis.insa-lyon.fr:./cc/$(basename ${OUTPUTDIR})" --exclude '.__afs*' --exclude "${OUTPUTDIR}/gatejob.*.o*"
-fi