#=========================================================
-# Find ggo (gengetopt) files (http://www.gnu.org/software/gengetopt/)
-FILE(GLOB ALL_GGO_FILES *.ggo)
-#MESSAGE(${ALL_GGO_FILES})
+macro(DD in)
+ message(${in}=${${in}})
+endmacro(DD)
+#=========================================================
-FOREACH(GGO_FILE ${ALL_GGO_FILES})
- # MESSAGE(input=${GGO_FILE})
- STRING(REGEX REPLACE "(.*).ggo"
- "\\1" GGO_BASEFILENAME
- "${GGO_FILE}")
- #GET_FILENAME_COMPONENT(GGO_BASEFILENAME ${GGO_FILE} NAME_WE)
- GET_FILENAME_COMPONENT(GGO_NAME ${GGO_BASEFILENAME} NAME)
- # MESSAGE( base= ${GGO_BASEFILENAME})
- # MESSAGE( name= ${GGO_NAME})
- SET(GGO_H ${GGO_BASEFILENAME}_ggo.h)
- #MESSAGE(${GGO_H})
- SET(GGO_C ${GGO_BASEFILENAME}_ggo.c)
- #MESSAGE(${GGO_C})
- SET(GGO_OUTPUT ${GGO_H} ${GGO_C})
- ADD_CUSTOM_COMMAND(OUTPUT ${GGO_OUTPUT}
- COMMAND ${CLITK_GENGETOPT}/gengetopt
- ARGS < ${GGO_FILE} --arg-struct-name=args_info_${GGO_NAME} --file-name=${GGO_BASEFILENAME}_ggo -u --conf-parser --include-getopt
- DEPENDS ${GGO_FILE}
- )
- ENDFOREACH(GGO_FILE)
#=========================================================
#Set a reasonable build mode default if the user hasn't set any
if (NOT CMAKE_BUILD_TYPE)
endif (NOT CMAKE_BUILD_TYPE)
#=========================================================
-SET(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIR}/bin/)
-SET(LIBRARY_OUTPUT_PATH ${PROJECT_BINARY_DIR}/lib)
-LINK_DIRECTORIES(${PROJECT_BINARY_DIR}/lib)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/common)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/tools)
-INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/signal)
+include_directories(${CLITK_SOURCE_DIR}/itk
+ ${CLITK_SOURCE_DIR}/filters
+ ${CLITK_SOURCE_DIR}/segmentation
+ ${CLITK_SOURCE_DIR}/registration
+ ${CLITK_SOURCE_DIR}/tools
+ ${CLITK_SOURCE_DIR}/common
+ ${PROJECT_BINARY_DIR})
+set(EXECUTABLE_OUTPUT_PATH ${PROJECT_BINARY_DIR}/bin)
+set(LIBRARY_OUTPUT_PATH ${PROJECT_BINARY_DIR}/lib)
+link_directories(${PROJECT_BINARY_DIR}/lib)
+include_directories(${PROJECT_BINARY_DIR}/tools) #For _ggo.h includes from other directories
+include_directories(${PROJECT_BINARY_DIR}/segmentation) #For _ggo.h includes from other directories
+include_directories(${PROJECT_BINARY_DIR}/registration) #For _ggo.h includes from other directories
+#=========================================================
+
+#=========================================================
+# Building in the source tree is forbidden
+if(PROJECT_BINARY_DIR STREQUAL ${PROJECT_SOURCE_DIR})
+ message(FATAL_ERROR "Building in the source tree is not allowed ! Quit; remove the file 'CMakeCache.txt' and the folder 'CMakeFiles' an
+d build outside the sources (for example 'mkdir build ; cmake <CLITK_DIR>'.")
+endif(PROJECT_BINARY_DIR STREQUAL ${PROJECT_SOURCE_DIR})
+#=========================================================
+
+#=========================================================
+# Remove some MS Visual c++ flags
+if(MSVC)
+ add_definitions(-D_CRT_SECURE_NO_WARNINGS -D_CRT_NONSTDC_NO_DEPRECATE -D_SCL_SECURE_NO_WARNINGS)
+endif(MSVC)
#=========================================================