Removed mat file from experimental

[clitk.git] / common / CMakeLists.txt

diff --git a/common/CMakeLists.txt b/common/CMakeLists.txt
index 9f92d71426d8901a5dc0dc21cc76aa0a91af7f47..5a700ac45c6fd864a319b36491eaf8948b4dd2c8 100644 (file)
--- a/common/CMakeLists.txt
+++ b/common/CMakeLists.txt
@@ -1,29 +1,37 @@
-#=========================================================
-INCLUDE(${PROJECT_SOURCE_DIR}/cmake/common.cmake)
-#=========================================================
-
 #=========================================================
 # make clitk libraries*
-CONFIGURE_FILE(clitkConfiguration.h.in ${PROJECT_BINARY_DIR}/clitkConfiguration.h)
+configure_file(clitkConfiguration.h.in ${PROJECT_BINARY_DIR}/clitkConfiguration.h)
 
-SET(clitkCommon_SRC
-  clitkCommon.cxx 
+set(clitkCommon_SRC
+  clitkCommon.cxx
   clitkListOfPair.cxx
   clitkTimer.cxx
   clitkImageCommon.cxx
   clitkTransformUtilities.cxx
   clitkIO.cxx
-  clitkVoxImageIO.cxx  
+  clitkGateAsciiImageIO.cxx
+  clitkGateAsciiImageIOFactory.cxx
+  clitkVoxImageIO.cxx
   clitkVoxImageIOFactory.cxx
-  clitkVfImageIO.cxx  
+  clitkVfImageIO.cxx
   clitkVfImageIOFactory.cxx
-  clitkHisImageIO.cxx  
-  clitkHisImageIOFactory.cxx
-  clitkXdrImageIOReader.cxx  
-  clitkXdrImageIOWriter.cxx  
+  clitkXdrImageIOReader.cxx
+  clitkXdrImageIOWriter.cxx
   clitkXdrImageIOFactory.cxx
-  clitkHndImageIO.cxx
-  clitkHndImageIOFactory.cxx
+  rtkHisImageIO.cxx
+  rtkHisImageIOFactory.cxx
+  rtkHndImageIO.cxx
+  rtkHndImageIOFactory.cxx
+  rtkEdfImageIO.cxx
+  rtkEdfImageIOFactory.cxx
+  rtkXRadImageIO.cxx
+  rtkXRadImageIOFactory.cxx
+  rtkImagXImageIO.cxx
+  rtkImagXImageIOFactory.cxx
+  rtkImagXXMLFileReader.cxx
+  clitkEsrfHstImageIO.cxx
+  clitkEsrfHstImageIOFactory.cxx
+  clitkEsrfHstXMLFileReader.cxx
   clitkDicomRTDoseIO.cxx
   clitkDicomRTDoseIOFactory.cxx
   clitkOrientation.cxx
@@ -31,29 +39,49 @@ SET(clitkCommon_SRC
   clitkExceptionObject.cxx
   clitkFilterBase.cxx
   clitkMemoryUsage.cxx
+  clitkMatrix.cxx
   vvImage.cxx
   vvImageReader.cxx
   vvImageWriter.cxx
 )
+if(CLITK_PRIVATE_FEATURES)
+  set(clitkCommon_SRC ${clitkCommon_SRC}
+    ${PROJECT_SOURCE_DIR}/private_features/clitkUsfImageIO.cxx
+    ${PROJECT_SOURCE_DIR}/private_features/clitkUsfImageIOFactory.cxx
+    ${PROJECT_SOURCE_DIR}/private_features/clitkUSVoxImageIO.cxx
+    ${PROJECT_SOURCE_DIR}/private_features/clitkUSVoxImageIOFactory.cxx
+    ${PROJECT_SOURCE_DIR}/private_features/clitkSvlImageIO.cxx
+    ${PROJECT_SOURCE_DIR}/private_features/clitkSvlImageIOFactory.cxx
+    )
+endif(CLITK_PRIVATE_FEATURES)
 
 ### Declare clitkCommon library
-ADD_LIBRARY(clitkCommon STATIC ${clitkCommon_SRC})
+add_library(clitkCommon STATIC ${clitkCommon_SRC})
+
+if(CLITK_MEMORY_INFO)
+  target_link_libraries(clitkCommon statgrab)
+endif(CLITK_MEMORY_INFO)
 
-IF(NOT ${LIBSTATGRAB} MATCHES "LIBSTATGRAB-NOTFOUND")
-  TARGET_LINK_LIBRARIES(clitkCommon statgrab)
-ENDIF(NOT ${LIBSTATGRAB} MATCHES "LIBSTATGRAB-NOTFOUND")
 
-TARGET_LINK_LIBRARIES(clitkCommon vtkCommon vtkImaging ${ITK_LIBRARIES})
+#=========================================================
+if(CLITK_USE_SYSTEM_GDCM)
+  find_package(GDCM REQUIRED)
+  include(${GDCM_USE_FILE})
+  target_link_libraries(clitkCommon vtkgdcm gdcmDICT gdcmMSFF)
+endif()
+#=========================================================
 
-ADD_LIBRARY(clitkDicomRTStruct STATIC
+target_link_libraries(clitkCommon ${VTK_LIBRARIES} ${ITK_LIBRARIES})
+
+add_library(clitkDicomRTStruct STATIC
   clitkDicomRT_Contour.cxx
   clitkDicomRT_ROI.cxx
   clitkDicomRT_StructureSet.cxx
   clitkDicomRTStruct2ImageFilter.cxx
-)
+  )
 
-TARGET_LINK_LIBRARIES(clitkDicomRTStruct vtkHybrid) 
+target_link_libraries(clitkDicomRTStruct clitkCommon)
 
-#ADD_LIBRARY(clitkCommonShared SHARED ${clitkCommon_SRC})
-#SET_TARGET_PROPERTIES(clitkCommonShared PROPERTIES COMPILE_FLAGS -fPIC)
+#add_library(clitkCommonShared SHARED ${clitkCommon_SRC})
+#set_target_properties(clitkCommonShared PROPERTIES COMPILE_FLAGS -fPIC)