-#ifndef CLITKCOMMON_H
-#define CLITKCOMMON_H
+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
-/**
- -------------------------------------------------------------------
- * @file clitkCommon.h
- * @author David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
- * @date 17 May 2006 07:57:56
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
- * @brief
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
- -------------------------------------------------------------------*/
+ It is distributed under dual licence
-// std include
-#include <config.h>
-#include <cstdlib>
-#include <algorithm>
-#include <iostream>
-#include <fstream>
-#include <sstream>
-#include <vector>
-#include <math.h>
-#include <typeinfo>
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+
+#ifndef CLITKCOMMON_H
+#define CLITKCOMMON_H
+
+// clitk include
+#include "clitkPortability.h"
+#include "clitkDD.h"
+#include "clitkExceptionObject.h"
-#include "itkMacro.h"
+// itk include (include std)
#include <itkContinuousIndex.h>
+#include <itkMacro.h>
#include <itkImageRegionConstIterator.h>
#include <itkImageRegionIterator.h>
+// std include
+#include <fstream>
+
+// Include for "rusage"
+#include <ctime>
+#if defined(unix) || defined(__APPLE__)
+# include <sys/time.h>
+# include <sys/resource.h>
+#elif defined(_WIN32)
+# include <windows.h>
+# include <stdint.h>
+#endif
+
+#define VTK_EXCLUDE_STRSTREAM_HEADERS
+
//--------------------------------------------------------------------
namespace clitk {
-
-#if defined(WIN32)
-#define lrint(x) (floor(x+(x>0) ? 0.5 : -0.5))
-#endif
-
+
typedef unsigned char uchar;
typedef unsigned short ushort;
typedef unsigned int uint;
- //--------------------------------------------------------------------
- // display
-#define DD(a) std::cout << #a " = [ " << a << " ]" << std::endl;
-#define DDV(a,n) { std::cout << #a " = [ "; for(unsigned int _i_=0; _i_<n; _i_++) { std::cout << a[_i_] << " "; }; std::cout << " ]" << std::endl;}
+#define CLITK_TRY_CATCH_EXIT(func) \
+ try { \
+ func; \
+ } \
+ catch (const itk::ExceptionObject& e) { \
+ e.Print(std::cout); \
+ exit(-1);\
+ } \
+ catch (const std::exception& e) { \
+ std::cout << e.what() << std::endl; \
+ exit(-2);\
+ } \
+ catch (...) { \
+ std::cout << "Unknown excpetion" << std::endl; \
+ exit(-3); \
+ }
+
+#ifndef ITK_OVERRIDE
+# define ITK_OVERRIDE
+#endif
//--------------------------------------------------------------------
// when everything goes wrong
#define WHEREAMI "[ " << __FILE__ << " ] line " << __LINE__
-#define FATAL(a) std::cerr << "ERROR in " << WHEREAMI << ": " << a; exit(0);
-
+#define FATAL(a) { std::cerr << "ERROR in " << WHEREAMI << ": " << a; exit(0); }
+
//--------------------------------------------------------------------
// GGO with modified struct name
#define GGO(ggo_filename, args_info) \
args_info_##ggo_filename args_info; \
- cmdline_parser2(argc, argv, &args_info, 1, 1, 0); \
+ cmdline_parser_##ggo_filename##2(argc, argv, &args_info, 1, 1, 0); \
if (args_info.config_given) \
- cmdline_parser_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
- else cmdline_parser(argc, argv, &args_info);
+ cmdline_parser_##ggo_filename##_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
+ else cmdline_parser_##ggo_filename(argc, argv, &args_info);
//--------------------------------------------------------------------
// skip line with #
//--------------------------------------------------------------------
// Return filename extension
std::string GetExtension(const std::string& filename);
-
+
+ // Return filename splitting in 1 or 2 parts : directory name (if exists) & filename
+ std::vector<std::string> SplitFilename(const std::string& filename);
+
//--------------------------------------------------------------------
// Convert float, double ... to string
template<class T> std::string toString(const T & t);
template<class T> std::string toStringVector(const T * t, const int n);
template<class T> std::string toStringVector(const T & t, const int n);
template<class T> std::string toStringVector(const std::vector<T> & t);
+ template <class T> bool fromString(T& t,
+ const std::string& s,
+ std::ios_base& (*f)(std::ios_base&)=std::dec);
//--------------------------------------------------------------------
// Display a progress %
TPixelDown PixelTypeDownCast(const TPixelUp & x);
template<>
float PixelTypeDownCast(const double & x);
+ template<>
+ double PixelTypeDownCast(const double & x);
//--------------------------------------------------------------------
// Return the indexes of sorted values in a vector
// Return the name of a type as a string
template<class TPixel>
std::string GetTypeAsString();
-
+
//--------------------------------------------------------------------
// Convert radian / degree
double rad2deg(double anglerad);
std::string CreateListOfTypes(bool last=true) {
return GetTypeAsString<T1>();
}
-
+
template<class T1, class T2>
std::string CreateListOfTypes(bool last=true) {
if (last) return CreateListOfTypes<T1>()+" and "+CreateListOfTypes<T2>();
else return CreateListOfTypes<T1>()+", "+CreateListOfTypes<T2>();
}
-
+
template<class T1, class T2, class T3>
std::string CreateListOfTypes(bool last=true) {
if (last) return CreateListOfTypes<T1,T2>(false)+" and "+CreateListOfTypes<T3>();
else return CreateListOfTypes<T1,T2,T3,T4,T5,T6,T7>(false)+", "+CreateListOfTypes<T8>();
}
//--------------------------------------------------------------------
-
+
//--------------------------------------------------------------------
void FindAndReplace(std::string & line, const std::string & tofind, const std::string & replacement);
void FindAndReplace(std::string & line, const std::vector<std::string> & tofind, const std::vector<std::string> & toreplace);
//--------------------------------------------------------------------
//--------------------------------------------------------------------
- double ComputeEuclideanDistanceFromPointToPlane(const itk::ContinuousIndex<double, 3> point,
- const itk::ContinuousIndex<double, 3> pointInPlane,
+ double ComputeEuclideanDistanceFromPointToPlane(const itk::ContinuousIndex<double, 3> point,
+ const itk::ContinuousIndex<double, 3> pointInPlane,
const itk::ContinuousIndex<double, 3> normalPlane);
//--------------------------------------------------------------------
void openFileForReading(std::ifstream & is, const std::string & filename);
void openFileForWriting(std::ofstream & os, const std::string & filename);
+ //--------------------------------------------------------------------
+ void readDoubleFromFile(const std::string & filename, std::vector<double> & list);
+
//--------------------------------------------------------------------
double cotan(double i);
double invcotan(double i);
template<class ImageType>
void CloneImage(const typename ImageType::Pointer & input, typename ImageType::Pointer & output);
+ //--------------------------------------------------------------------
+ void PrintMemoryUsed();
+
+ //--------------------------------------------------------------------
+ // Convert a map to a vector
+ template <typename M, typename V>
+ void MapToVecFirst(const M & m, V & v);
+ template <typename M, typename V>
+ void MapToVecSecond(const M & m, V & v);
+
+ //--------------------------------------------------------------------
+ // Find/replace string
+ template<class T>
+ int inline findAndReplace(T& source, const T& find, const T& replace);
+
#include "clitkCommon.txx"
} // end namespace
#endif /* end #define CLITKCOMMON_H */
-
git://git.creatis.insa-lyon.fr / clitk.git / blobdiff