+/*=========================================================================
+ Program: vv http://www.creatis.insa-lyon.fr/rio/vv
+
+ Authors belong to:
+ - University of LYON http://www.universite-lyon.fr/
+ - Léon Bérard cancer center http://www.centreleonberard.fr
+ - CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
+
+ This software is distributed WITHOUT ANY WARRANTY; without even
+ the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the copyright notices for more information.
+
+ It is distributed under dual licence
+
+ - BSD See included LICENSE.txt file
+ - CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
+===========================================================================**/
+
#ifndef CLITKCOMMON_H
#define CLITKCOMMON_H
-/**
- -------------------------------------------------------------------
- * @file clitkCommon.h
- * @author David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
- * @date 17 May 2006 07:57:56
-
- * @brief
+// clitk include
+#include "clitkPortability.h"
+#include "clitkDD.h"
+#include "clitkExceptionObject.h"
- -------------------------------------------------------------------*/
+// itk include (include std)
+#include <itkContinuousIndex.h>
+#include <itkMacro.h>
+#include <itkImageRegionConstIterator.h>
+#include <itkImageRegionIterator.h>
// std include
-#include <config.h>
-#include <cstdlib>
-#include <algorithm>
-#include <iostream>
#include <fstream>
-#include <sstream>
-#include <vector>
-#include <math.h>
-#include <typeinfo>
-#include "itkMacro.h"
-#include <itkContinuousIndex.h>
+// Include for "rusage"
+#include <ctime>
+#if defined(unix) || defined(__APPLE__)
+# include <sys/time.h>
+# include <sys/resource.h>
+#elif defined(WIN32)
+# include <windows.h>
+#endif
//--------------------------------------------------------------------
namespace clitk {
-
-#if defined(WIN32)
-#define lrint(x) (floor(x+(x>0) ? 0.5 : -0.5))
-#endif
-
+
typedef unsigned char uchar;
typedef unsigned short ushort;
typedef unsigned int uint;
+
+#define CLITK_TRY_CATCH_EXIT(func) \
+ try { \
+ func; \
+ } \
+ catch (const itk::ExceptionObject& e) { \
+ e.Print(std::cout); \
+ exit(-1);\
+ } \
+ catch (const std::exception& e) { \
+ std::cout << e.what() << std::endl; \
+ exit(-2);\
+ } \
+ catch (...) { \
+ std::cout << "Unknown excpetion" << std::endl; \
+ exit(-3); \
+ }
+
//--------------------------------------------------------------------
- // display
-#define DD(a) std::cout << #a " = [ " << a << " ]" << std::endl;
-#define DDV(a,n) { std::cout << #a " = [ "; for(unsigned int _i_=0; _i_<n; _i_++) { std::cout << a[_i_] << " "; }; std::cout << " ]" << std::endl;}
-
+ // when everything goes wrong
+#define WHEREAMI "[ " << __FILE__ << " ] line " << __LINE__
+#define FATAL(a) std::cerr << "ERROR in " << WHEREAMI << ": " << a; exit(0);
+
//--------------------------------------------------------------------
// GGO with modified struct name
-#define GGO(ggo_filename, args_info) \
- gengetopt_args_info_##ggo_filename args_info; \
- cmdline_parser2(argc, argv, &args_info, 1, 1, 0); \
- if (args_info.config_given) \
- cmdline_parser_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
- else cmdline_parser(argc, argv, &args_info);
-
-
- /* //--------------------------------------------------------------------
- // GGO default
#define GGO(ggo_filename, args_info) \
- gengetopt_args_info_##ggo_filename args_info; \
- cmdline_parser2(argc, argv, &args_info, 1, 1, 0); \
+ args_info_##ggo_filename args_info; \
+ cmdline_parser_##ggo_filename##2(argc, argv, &args_info, 1, 1, 0); \
if (args_info.config_given) \
- cmdline_parser_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
- else cmdline_parser(argc, argv, &args_info);
-
- //--------------------------------------------------------------------
- */
+ cmdline_parser_##ggo_filename##_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
+ else cmdline_parser_##ggo_filename(argc, argv, &args_info);
+
//--------------------------------------------------------------------
// skip line with #
void skipComment(std::istream & is);
template<class T> std::string toStringVector(const T * t, const int n);
template<class T> std::string toStringVector(const T & t, const int n);
template<class T> std::string toStringVector(const std::vector<T> & t);
+ template <class T> bool fromString(T& t,
+ const std::string& s,
+ std::ios_base& (*f)(std::ios_base&)=std::dec);
//--------------------------------------------------------------------
// Display a progress %
void openFileForReading(std::ifstream & is, const std::string & filename);
void openFileForWriting(std::ofstream & os, const std::string & filename);
+ //--------------------------------------------------------------------
+ void readDoubleFromFile(const std::string & filename, std::vector<double> & list);
+
//--------------------------------------------------------------------
double cotan(double i);
double invcotan(double i);
//--------------------------------------------------------------------
void disableStdCerr();
void enableStdCerr();
-
+
+ //--------------------------------------------------------------------
+ template<class ImageType>
+ void CloneImage(const typename ImageType::Pointer & input, typename ImageType::Pointer & output);
+
+ //--------------------------------------------------------------------
+ void PrintMemoryUsed();
+
+ //--------------------------------------------------------------------
+ // Convert a map to a vector
+ template <typename M, typename V>
+ void MapToVecFirst(const M & m, V & v);
+ template <typename M, typename V>
+ void MapToVecSecond(const M & m, V & v);
+
#include "clitkCommon.txx"
} // end namespace