Authors belong to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
- BSD See included LICENSE.txt file
- CeCILL-B http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-======================================================================-====*/
+===========================================================================**/
+
#ifndef CLITKCOMMON_H
#define CLITKCOMMON_H
-/**
- -------------------------------------------------------------------
- * @file clitkCommon.h
- * @author David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
- * @date 17 May 2006 07:57:56
-
- * @brief
-
- -------------------------------------------------------------------*/
// clitk include
-
-#include "clitkConfiguration.h"
#include "clitkPortability.h"
+#include "clitkDD.h"
+#include "clitkExceptionObject.h"
// itk include (include std)
#include <itkContinuousIndex.h>
#include <itkImageRegionConstIterator.h>
#include <itkImageRegionIterator.h>
+// std include
+#include <fstream>
+
+// Include for "rusage"
+#include <ctime>
+#if defined(unix) || defined(__APPLE__)
+# include <sys/time.h>
+# include <sys/resource.h>
+#elif defined(WIN32)
+# include <windows.h>
+#endif
+
//--------------------------------------------------------------------
namespace clitk {
typedef unsigned char uchar;
typedef unsigned short ushort;
typedef unsigned int uint;
-
- //--------------------------------------------------------------------
- // display
-#define DD(a) std::cout << #a " = [ " << a << " ]" << std::endl;
-#define DDV(a,n) { std::cout << #a " = [ "; for(unsigned int _i_=0; _i_<n; _i_++) { std::cout << a[_i_] << " "; }; std::cout << " ]" << std::endl;}
+
+#define CLITK_TRY_CATCH_EXIT(func) \
+ try { \
+ func; \
+ } \
+ catch (const itk::ExceptionObject& e) { \
+ e.Print(std::cout); \
+ exit(-1);\
+ } \
+ catch (const std::exception& e) { \
+ std::cout << e.what() << std::endl; \
+ exit(-2);\
+ } \
+ catch (...) { \
+ std::cout << "Unknown excpetion" << std::endl; \
+ exit(-3); \
+ }
+
//--------------------------------------------------------------------
// when everything goes wrong
// GGO with modified struct name
#define GGO(ggo_filename, args_info) \
args_info_##ggo_filename args_info; \
- cmdline_parser2(argc, argv, &args_info, 1, 1, 0); \
+ cmdline_parser_##ggo_filename##2(argc, argv, &args_info, 1, 1, 0); \
if (args_info.config_given) \
- cmdline_parser_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
- else cmdline_parser(argc, argv, &args_info);
+ cmdline_parser_##ggo_filename##_configfile (args_info.config_arg, &args_info, 0, 0, 1); \
+ else cmdline_parser_##ggo_filename(argc, argv, &args_info);
//--------------------------------------------------------------------
// skip line with #
template<class T> std::string toStringVector(const T * t, const int n);
template<class T> std::string toStringVector(const T & t, const int n);
template<class T> std::string toStringVector(const std::vector<T> & t);
+ template <class T> bool fromString(T& t,
+ const std::string& s,
+ std::ios_base& (*f)(std::ios_base&)=std::dec);
//--------------------------------------------------------------------
// Display a progress %
void openFileForReading(std::ifstream & is, const std::string & filename);
void openFileForWriting(std::ofstream & os, const std::string & filename);
+ //--------------------------------------------------------------------
+ void readDoubleFromFile(const std::string & filename, std::vector<double> & list);
+
//--------------------------------------------------------------------
double cotan(double i);
double invcotan(double i);
template<class ImageType>
void CloneImage(const typename ImageType::Pointer & input, typename ImageType::Pointer & output);
+ //--------------------------------------------------------------------
+ void PrintMemoryUsed();
+
+ //--------------------------------------------------------------------
+ // Convert a map to a vector
+ template <typename M, typename V>
+ void MapToVecFirst(const M & m, V & v);
+ template <typename M, typename V>
+ void MapToVecSecond(const M & m, V & v);
+
#include "clitkCommon.txx"
} // end namespace