Add missing clitkElastixTransformToMatrix

[clitk.git] / common / clitkDicomRT_ROI.cxx

diff --git a/common/clitkDicomRT_ROI.cxx b/common/clitkDicomRT_ROI.cxx
index 783b97227921af73bf540c60a6f3e18c0d8c938a..1fd9fe1f1c6b806bd0f08be65c15d32d47a42f7f 100644 (file)
--- a/common/clitkDicomRT_ROI.cxx
+++ b/common/clitkDicomRT_ROI.cxx
@@ -41,6 +41,7 @@ clitk::DicomRT_ROI::DicomRT_ROI()
   mBackgroundValue = 0;
   mForegroundValue = 1;
   SetDicomUptodateFlag(false);
+  mFilename = "";
 }
 //--------------------------------------------------------------------
 
@@ -141,6 +142,7 @@ double clitk::DicomRT_ROI::GetForegroundValueLabelImage() const
 #if GDCM_MAJOR_VERSION == 2
 bool clitk::DicomRT_ROI::Read(gdcm::Item * itemInfo, gdcm::Item * itemContour)
 {
+  FATAL("Error : compile vv with itk4 + external gdcm");
   // Keep dicom item
   mItemInfo = itemInfo;
   mItemContour = itemContour;
@@ -286,10 +288,11 @@ void clitk::DicomRT_ROI::ComputeMeshFromContour()
 
 
 #if GDCM_MAJOR_VERSION == 2
-
 //--------------------------------------------------------------------
 void clitk::DicomRT_ROI::UpdateDicomItem()
 {
+  FATAL("Error : compile vv with itk4 + external gdcm");
+
   if (GetDicomUptoDateFlag()) return;
   DD("ROI::UpdateDicomItem");
   DD(GetName());  
@@ -375,6 +378,7 @@ vvImage * clitk::DicomRT_ROI::GetImage() const
 //--------------------------------------------------------------------
 void clitk::DicomRT_ROI::ComputeContoursFromImage()
 {
+  FATAL("ComputeContoursFromImage should not be call. To be replace");
   DD("ComputeMeshFromImage");
 
   // Check that an image is loaded
@@ -468,7 +472,19 @@ void clitk::DicomRT_ROI::Read(vtkSmartPointer<vtkGDCMPolyDataReader> & reader, i
   
   mName = p->GetStructureSetROIName(roiindex);
   mNumber = p->GetStructureSetROINumber(roiindex);
+
   //mColor = //FIXME !!  
+
+  // gdcm::Attribute<0x3006,0x002a> color = {};
+  
+  // const gdcm::DataSet & nestedds = mItemContour->GetNestedDataSet();
+  // color.SetFromDataSet( nestedds );
+  // assert( color.GetNumberOfValues() == 3 );
+  // mColor[0] = color.GetValue(0);
+  // mColor[1] = color.GetValue(1);
+  // mColor[2] = color.GetValue(2);
+
+
   SetDicomUptodateFlag(true);
   // Get the contour
   mMesh =  reader->GetOutput(roiindex);