mMeshIsUpToDate = false;
mBackgroundValue = 0;
mForegroundValue = 1;
- mZDelta = 0;
}
//--------------------------------------------------------------------
gdcm::Tag tcsq(0x3006,0x0040);
if( !nestedds.FindDataElement( tcsq ) )
{
+ std::cerr << "Warning. Could not read contour for structure <" << mName << ">, number" << mNumber << " ? I ignore it" << std::endl;
+ return;
}
const gdcm::DataElement& csq = nestedds.GetDataElement( tcsq );
gdcm::SmartPointer<gdcm::SequenceOfItems> sqi2 = csq.GetValueAsSQ();
}
unsigned int nitems = sqi2->GetNumberOfItems();
- bool contour_processed=false;
- bool delta_computed=false;
- double last_z=0;
for(unsigned int i = 0; i < nitems; ++i)
{
- const gdcm::Item & j = sqi2->GetItem(i+1); // Item start at #1
- DicomRT_Contour::Pointer c = DicomRT_Contour::New();
- bool b = c->Read(j);
- if (b) {
- mListOfContours.push_back(c);
- if (contour_processed) {
- double delta=c->GetZ() - last_z;
- if (delta_computed)
- assert(mZDelta == delta);
- else
- mZDelta = delta;
- } else
- contour_processed=true;
- last_z=c->GetZ();
+ const gdcm::Item & j = sqi2->GetItem(i+1); // Item start at #1
+ DicomRT_Contour::Pointer c = DicomRT_Contour::New();
+ bool b = c->Read(j);
+ if (b) {
+ mListOfContours.push_back(c);
+ }
}
- }
-
}
#else
void clitk::DicomRT_ROI::Read(std::map<int, std::string> & rois, gdcm::SQItem * item)
// Read contours [Contour Sequence]
gdcm::SeqEntry * contours=item->GetSeqEntry(0x3006,0x0040);
- bool contour_processed=false;
- bool delta_computed=false;
- double last_z=0;
- for(gdcm::SQItem* j=contours->GetFirstSQItem(); j!=0; j=contours->GetNextSQItem()) {
- DicomRT_Contour::Pointer c = DicomRT_Contour::New();
- bool b = c->Read(j);
- if (b) {
- mListOfContours.push_back(c);
- if (contour_processed) {
- double delta=c->GetZ() - last_z;
- if (delta_computed)
- assert(mZDelta == delta);
- else
- mZDelta = delta;
- } else
- contour_processed=true;
- last_z=c->GetZ();
+ if (contours) {
+ int i=0;
+ for(gdcm::SQItem* j=contours->GetFirstSQItem(); j!=0; j=contours->GetNextSQItem()) {
+ DicomRT_Contour::Pointer c = DicomRT_Contour::New();
+ bool b = c->Read(j);
+ if (b) {
+ mListOfContours.push_back(c);
+ }
+ ++i;
}
}
+ else {
+ std::cerr << "Warning. Could not read contour for structure <" << mName << ">, number" << mNumber << " ? I ignore it" << std::endl;
+ }
}
#endif
//--------------------------------------------------------------------
//--------------------------------------------------------------------
void clitk::DicomRT_ROI::SetFromBinaryImage(vvImage * image, int n,
- std::string name,
- std::vector<double> color,
- std::string filename)
+ std::string name,
+ std::vector<double> color,
+ std::string filename)
{
// ROI number [Referenced ROI Number]