Authors belongs to:
- University of LYON http://www.universite-lyon.fr/
- - Léon Bérard cancer center http://oncora1.lyon.fnclcc.fr
+ - Léon Bérard cancer center http://www.centreleonberard.fr
- CREATIS CNRS laboratory http://www.creatis.insa-lyon.fr
This software is distributed WITHOUT ANY WARRANTY; without even
#include "clitkDicomRT_Contour.h"
#include "vvImage.h"
+#include <vtkMatrix4x4.h>
+#include "clitkConfiguration.h"
+#if CLITK_USE_SYSTEM_GDCM == 1
+#include <vtkGDCMPolyDataReader.h>
+#include <vtkRTStructSetProperties.h>
+#endif
+
namespace clitk {
- //--------------------------------------------------------------------
- class DicomRT_ROI {
-
- public:
- DicomRT_ROI();
- ~DicomRT_ROI();
-
- void Print(std::ostream & os = std::cout) const;
- void Read(std::map<int, std::string> & rois, gdcm::SQItem * item);
- void SetFromBinaryImage(vvImage::Pointer image, int n,
- std::string name,
- std::vector<double> color,
- std::string filename);
-
- int GetROINumber() const;
- const std::string & GetName() const;
- const std::string & GetFilename() const;
- const std::vector<double> & GetDisplayColor() const;
- vtkPolyData * GetMesh();
- const vvImage::Pointer GetImage() const;
-
- void SetDisplayColor(double r, double v, double b);
- std::vector<double> & GetDisplayColor() { return mColor; }
-
- double GetBackgroundValueLabelImage() const;
- void SetBackgroundValueLabelImage(double bg);
-
- double GetForegroundValueLabelImage() const;
- void SetForegroundValueLabelImage(double bg);
-
- void SetImage(vvImage * im);
-
- protected:
- void ComputeMesh();
- std::string mName;
- std::string mFilename;
- int mNumber;
- std::vector<double> mColor;
- std::vector<DicomRT_Contour*> mListOfContours;
- vtkPolyData * mMesh;
- bool mMeshIsUpToDate;
- vvImage::Pointer mImage;
- double mBackgroundValue;
- double mForegroundValue;
- };
- //--------------------------------------------------------------------
+//--------------------------------------------------------------------
+class DicomRT_ROI : public itk::LightObject
+{
+
+public:
+ typedef DicomRT_ROI Self;
+ typedef itk::SmartPointer<Self> Pointer;
+ itkNewMacro(Self);
+
+ void Print(std::ostream & os = std::cout) const;
+ void SetFromBinaryImage(vvImage::Pointer image, int n,
+ std::string name,
+ std::vector<double> color,
+ std::string filename);
+
+ int GetROINumber() const;
+ void SetROINumber(int);
+ const std::string & GetName() const;
+ const std::string & GetFilename() const;
+ const std::vector<double> & GetDisplayColor() const;
+ vtkPolyData * GetMesh();
+ vvImage * GetImage() const;
+
+ void SetDisplayColor(double r, double v, double b);
+ std::vector<double> & GetDisplayColor() { return mColor; }
+
+ double GetBackgroundValueLabelImage() const;
+ void SetBackgroundValueLabelImage(double bg);
+
+ double GetForegroundValueLabelImage() const;
+ void SetForegroundValueLabelImage(double bg);
+
+ void SetImage(vvImage::Pointer im);
+ DicomRT_Contour* GetContour(int n);
+
+ void SetTransformMatrix(vtkMatrix4x4* matrix);
+
+ // Compute a vtk mesh from the dicom contours
+ void ComputeMeshFromContour();
+ void ComputeContoursFromImage();
+
+ // Indicate if the mesh is uptodate according to the dicom
+ void SetDicomUptodateFlag(bool b) { m_DicomUptodateFlag = b; }
+ bool GetDicomUptoDateFlag() const { return m_DicomUptodateFlag; }
+ void SetName(std::string n) { mName = n; }
+
+ // Read from DICOM RT STRUCT
+#if GDCM_MAJOR_VERSION >= 2
+ bool Read(gdcm::Item * itemInfo, gdcm::Item * itemContour);
+ void UpdateDicomItem();
+#else
+ void Read(std::map<int, std::string> & rois, gdcm::SQItem * item);
+#endif
+
+#if CLITK_USE_SYSTEM_GDCM == 1
+ void Read(vtkSmartPointer<vtkGDCMPolyDataReader> & reader, int roiindex);
+#endif
+
+protected:
+ std::string mName;
+ std::string mFilename;
+ int mNumber;
+ std::vector<double> mColor;
+ std::vector<DicomRT_Contour::Pointer> mListOfContours;
+ vtkSmartPointer<vtkPolyData> mMesh;
+ vtkSmartPointer<vtkMatrix4x4> mTransformMatrix;
+ bool mMeshIsUpToDate;
+ vvImage::Pointer mImage;
+ double mBackgroundValue;
+ double mForegroundValue;
+ bool m_DicomUptodateFlag;
+
+#if GDCM_MAJOR_VERSION >= 2
+ gdcm::Item * mItemInfo;
+ gdcm::Item * mItemContour;
+ gdcm::SmartPointer<gdcm::SequenceOfItems> mContoursSequenceOfItems;
+#endif
+
+private:
+ DicomRT_ROI();
+ ~DicomRT_ROI();
+};
+//--------------------------------------------------------------------
} // end namespace clitk
#endif // CLITKDICOMRT_ROI_H