Remove transparency for screenshot

[clitk.git] / common / clitkDicomRT_StructureSet.h

diff --git a/common/clitkDicomRT_StructureSet.h b/common/clitkDicomRT_StructureSet.h
index 84d74860f042b241b807513f4dcfce600df03d7b..dff4d75276aa3196dca59941661007f7da497733 100644 (file)
--- a/common/clitkDicomRT_StructureSet.h
+++ b/common/clitkDicomRT_StructureSet.h
@@ -4,7 +4,7 @@
 
   Authors belongs to: 
   - University of LYON           http://www.universite-lyon.fr/
-  - Léon Bérard cancer center    http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center    http://www.centreleonberard.fr
   - CREATIS CNRS laboratory      http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -20,10 +20,31 @@
 #ifndef CLITKDICOMRT_STRUCTURESET_H
 #define CLITKDICOMRT_STRUCTURESET_H
 
+// clitk
 #include "clitkCommon.h" 
 #include "clitkDicomRT_ROI.h"
+
+//vtk
+#include "vtkMatrix4x4.h"
+
+// vv
 #include "vvImage.h"
 
+// gdcm
+#include "clitkConfiguration.h"
+#if CLITK_USE_SYSTEM_GDCM == 1
+#include <vtkGDCMPolyDataReader.h>
+#include <vtkRTStructSetProperties.h>
+#endif
+
+// gdcm
+#if GDCM_MAJOR_VERSION >= 2
+// This is not use if CLITK_USE_SYSTEM_GDCM==1
+#include "gdcmReader.h"
+#include "gdcmWriter.h"
+#include "gdcmAttribute.h"
+#endif
+
 namespace clitk {
 
 //--------------------------------------------------------------------
@@ -34,11 +55,22 @@ public:
   typedef itk::SmartPointer<Self> Pointer;
   itkNewMacro(Self);
 
+  typedef std::map<int, clitk::DicomRT_ROI::Pointer> ROIMapContainer;
+  typedef ROIMapContainer::iterator ROIIteratorType;
+  typedef ROIMapContainer::const_iterator ROIConstIteratorType;
+
   void Print(std::ostream & os = std::cout) const;
   void Read(const std::string & filename);
+  void SetTransformMatrix(vtkMatrix4x4* matrix);
+  bool IsDicomRTStruct(const std::string & filename);
+  void Write(const std::string & filename);
 
-  const std::vector<DicomRT_ROI::Pointer> & GetListOfROI() const;
-  clitk::DicomRT_ROI * GetROI(int n);
+  clitk::DicomRT_ROI * GetROIFromROINumber(int n);
+  clitk::DicomRT_ROI* GetROIFromROIName(const std::string& name);
+  //clitk::DicomRT_ROI* GetROIFromROINameRegEx(const std::string& regEx);
+  clitk::DicomRT_ROI* GetROIFromROINameSubstr(const std::string& s);
+  ROIMapContainer * GetROIsFromROINameSubstr(const std::string& s);
+  ROIMapContainer & GetROIs() { return mROIs; }
   const std::string & GetStudyID() const;
   const std::string & GetStudyTime() const;
   const std::string & GetStudyDate() const;
@@ -49,6 +81,11 @@ public:
 
   int AddBinaryImageAsNewROI(vvImage * i, std::string name);
   
+#if GDCM_MAJOR_VERSION >= 2
+  // Static
+  static int ReadROINumber(const gdcm::Item & item);
+#endif
+
 protected:
   std::string mStudyID;
   std::string mStudyTime;
@@ -57,9 +94,16 @@ protected:
   std::string mName;
   std::string mDate;
   std::string mTime;
+  vtkSmartPointer<vtkMatrix4x4> mTransformMatrix;
+
+  std::map<int, clitk::DicomRT_ROI::Pointer> mROIs;
   std::map<int, std::string> mMapOfROIName;
-  std::map<int, int> mMapOfROIIndex;
-  std::vector<clitk::DicomRT_ROI::Pointer> mListOfROI;
+#if GDCM_MAJOR_VERSION >= 2
+  gdcm::Reader * mReader;
+  gdcm::SmartPointer<gdcm::SequenceOfItems> mROIInfoSequenceOfItems;
+  gdcm::SmartPointer<gdcm::SequenceOfItems> mROIContoursSequenceOfItems;  
+#endif
+  gdcm::File * mFile;
 
 private:
   DicomRT_StructureSet();