Comment snoutID

[clitk.git] / common / clitkFilterBase.h

diff --git a/common/clitkFilterBase.h b/common/clitkFilterBase.h
index 1cd75794d6aa2bdc190c4d6bca4c755979cdd6a9..1019b7b76aa49f9b28e8796151a2e60c7c89672b 100644 (file)
--- a/common/clitkFilterBase.h
+++ b/common/clitkFilterBase.h
@@ -3,7 +3,7 @@
 
   Authors belong to: 
   - University of LYON              http://www.universite-lyon.fr/
-  - Léon Bérard cancer center       http://oncora1.lyon.fnclcc.fr
+  - Léon Bérard cancer center       http://www.centreleonberard.fr
   - CREATIS CNRS laboratory         http://www.creatis.insa-lyon.fr
 
   This software is distributed WITHOUT ANY WARRANTY; without even
@@ -14,13 +14,12 @@
 
   - BSD        See included LICENSE.txt file
   - CeCILL-B   http://www.cecill.info/licences/Licence_CeCILL-B_V1-en.html
-  ======================================================================-====*/
+  ===========================================================================**/
 
 #ifndef CLITKFILTERBASE_H
 #define CLITKFILTERBASE_H
 
 // clitk
-#include "clitkCommon.h"
 #include "clitkTimer.h"
 #include "clitkFilterMacros.txx"
 #include "clitkLabelizeParameters.h"
@@ -32,7 +31,7 @@ namespace clitk {
   
   //--------------------------------------------------------------------
   /*
-    Convenient class to manage options from GGO (gengetopt) to filter
+    Convenient class to manage frequent options
   */
   //--------------------------------------------------------------------
   class FilterBase
@@ -43,7 +42,10 @@ namespace clitk {
     typedef FilterBase  Self;
     
     // Run-time type information (and related methods)
-    itkTypeMacro(FilterBase, Object);
+    virtual const char *GetNameOfClass() const
+      {
+      return "FilterBase";
+      }
 
     // Needed by itkSetMacro (cannot inherit from itkObject because of
     // multiple inheritance)
@@ -56,23 +58,35 @@ namespace clitk {
     virtual bool GetDebug() const { return Superclass::GetDebug(); }
 
     // Verbose options management
-    itkSetMacro(VerboseOption, bool);
-    itkGetConstMacro(VerboseOption, bool);
-    itkBooleanMacro(VerboseOption);
-    GGO_DefineOption_Flag(verboseOption, SetVerboseOption);
+    itkSetMacro(VerboseFlag, bool);
+    itkGetConstMacro(VerboseFlag, bool);
+    itkBooleanMacro(VerboseFlag);
+
+    // Verbose Options
+    itkSetMacro(VerboseOptionFlag, bool);
+    itkGetConstMacro(VerboseOptionFlag, bool);
+    itkBooleanMacro(VerboseOptionFlag);
+
+    // Verbose Memory
+    itkSetMacro(VerboseMemoryFlag, bool);
+    itkGetConstMacro(VerboseMemoryFlag, bool);
+    itkBooleanMacro(VerboseMemoryFlag);
+
+    // Verbose ImageSize
+    itkSetMacro(VerboseImageSizeFlag, bool);
+    itkGetConstMacro(VerboseImageSizeFlag, bool);
+    itkBooleanMacro(VerboseImageSizeFlag);
 
     // Steps management
     itkSetMacro(NumberOfSteps, int);
     itkGetConstMacro(NumberOfSteps, int);
-    itkSetMacro(VerboseStep, bool);
-    itkGetConstMacro(VerboseStep, bool);
-    itkBooleanMacro(VerboseStep);
-    GGO_DefineOption_Flag(verboseStep, SetVerboseStep);
+    itkSetMacro(VerboseStepFlag, bool);
+    itkGetConstMacro(VerboseStepFlag, bool);
+    itkBooleanMacro(VerboseStepFlag);
 
-    itkSetMacro(WriteStep, bool);
-    itkGetConstMacro(WriteStep, bool);
-    itkBooleanMacro(WriteStep);
-    GGO_DefineOption_Flag(writeStep, SetWriteStep);
+    itkSetMacro(WriteStepFlag, bool);
+    itkGetConstMacro(WriteStepFlag, bool);
+    itkBooleanMacro(WriteStepFlag);
 
     itkSetMacro(CurrentStepNumber, int);
     itkGetConstMacro(CurrentStepNumber, int);
@@ -82,7 +96,10 @@ namespace clitk {
     itkGetConstMacro(CurrentStepBaseId, std::string);
     itkSetMacro(CurrentStepName, std::string);
     itkGetConstMacro(CurrentStepName, std::string);
-
+    
+    void StartSubStep();
+    void StopSubStep();
+    
     // Convenient function for verbose option
     template<class OptionType>
     void VerboseOption(std::string name, OptionType value);    
@@ -93,10 +110,9 @@ namespace clitk {
 
     void SetWarning(std::string e);
     itkGetConstMacro(Warning, std::string);
-    itkSetMacro(VerboseWarningOff, bool);
-    itkGetConstMacro(VerboseWarningOff, bool);
-    itkBooleanMacro(VerboseWarningOff);
-    GGO_DefineOption_Flag(verboseWarningOff, SetVerboseWarningOff);
+    itkSetMacro(VerboseWarningFlag, bool);
+    itkGetConstMacro(VerboseWarningFlag, bool);
+    itkBooleanMacro(VerboseWarningFlag);
     
     // Use this function to cancel the filter between step
     void Cancel();
@@ -105,25 +121,30 @@ namespace clitk {
   protected:
     FilterBase();
     virtual ~FilterBase() {}    
-    void StartNewStep(std::string s);
+    void StartNewStep(std::string s, bool endl=true);
     template<class TInternalImageType>
-    void StopCurrentStep(typename TInternalImageType::Pointer p);
+    void StopCurrentStep(typename TInternalImageType::Pointer p, std::string txt="");
     void StopCurrentStep();
 
-    bool m_VerboseOption;  
-    bool m_VerboseStep;
-    bool m_WriteStep;
+    bool m_VerboseFlag;  
+    bool m_VerboseOptionFlag;  
+    bool m_VerboseStepFlag;
+    bool m_VerboseMemoryFlag;
+    bool m_VerboseImageSizeFlag;
+    bool m_WriteStepFlag;
     int m_CurrentStepNumber;
     int m_NumberOfSteps;
     std::string m_CurrentStepId;
     std::string m_CurrentStepBaseId;
     std::string m_CurrentStepName;
     std::string m_Warning;
-    bool m_VerboseWarningOff;
+    bool m_VerboseWarningFlag;
     bool m_IsCancelled;
     Timer m_CurrentStepTimer;
-    
 
+    std::vector<int> m_SubstepNumbers;
+    std::vector<std::string> m_SubstepID;
+       
   private:
     FilterBase(const Self&); //purposely not implemented
     void operator=(const Self&); //purposely not implemented